Simon Lindhoud

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One-shot design of functional protein binders with BindCraft
Pacesa, M., Nickel, L., Schellhaas, C., Schmidt, J., Pyatova, E., Kissling, L., Barendse, P., Choudhury, J., Kapoor, S., Alcaraz-Serna, A., Cho, Y., Ghamary, K. H., Vinué, L., Yachnin, B. J., Wollacott, A. M., Buckley, S., Westphal, A. H., Lindhoud, S., Georgeon, S. & Goverde, C. A. & 9 others, Hatzopoulos, G. N., Gönczy, P., Muller, Y. D., Schwank, G., Swarts, D. C., Vecchio, A. J., Schneider, B. L., Ovchinnikov, S. & Correia, B. E., 9 Oct 2025, In: Nature. 646, 8084, p. 483-492 30 p.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
57 Link opens in a new tab Citations (Scopus)
Evolutionary origins and functional diversification of Auxin Response Factors
Hernández-García, J., Carrillo-Carrasco, V. P., Rienstra, J., Tanaka, K., de Roij, M., Dipp-Álvarez, M., Freire-Ríos, A., Crespo, I., Boer, R., van den Berg, W. A. M., Lindhoud, S. & Weijers, D., Dec 2024, In: Nature Communications. 15, 1, 16 p., 10909.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
24 Link opens in a new tab Citations (Scopus)
Probing DNA - Transcription Factor Interactions Using Single-Molecule Fluorescence Detection in Nanofluidic Devices
Fontana, M., Ivanovaitė, Š., Lindhoud, S., van der Wijk, E., Mathwig, K., van den Berg, W., Weijers, D. & Hohlbein, J., Apr 2022, In: Advanced Biology. 6, 4, 2100953.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
4 Link opens in a new tab Citations (Scopus)
Short prokaryotic Argonaute systems trigger cell death upon detection of invading DNA
Koopal, B., Potocnik, A., Mutte, S. K., Aparicio-Maldonado, C., Lindhoud, S., Vervoort, J. J. M., Brouns, S. J. J. & Swarts, D. C., 28 Apr 2022, In: Cell. 185, 9, p. 1471-1486
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
143 Link opens in a new tab Citations (Scopus)
Two-Component Nanoparticle Vaccine Displaying Glycosylated Spike S1 Domain Induces Neutralizing Antibody Response against SARS-CoV-2 Variants
van Oosten, L., Altenburg, J. J., Fougeroux, C., Geertsema, C., van den End, E. J., Evers, W. A. C., Westphal, A. H., Lindhoud, S., van den Berg, W. A. M., Swarts, D. C., Deurhof, L., Suhrbier, A., Le, T. T., Torres Morales, S., Myeni, S. K., Kikkert, M., Sander, A. F., de Jongh, W. A., Dagil, R. & Nielsen, M. A. & 9 others, Salanti, A., Søgaard, M., Keijzer, T. M. P., Weijers, D., Eppink, M. H. M., Wijffels, R. H., van Oers, M. M., Martens, D. E. & Pijlman, G. P., 26 Oct 2021, In: mBio. 12, 5, e01813-21.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
36 Link opens in a new tab Citations (Scopus)

SPARTA-related RNA and DNA
Koopal, B. (Creator), Potocnik, A. (Creator), Mutte, S. K. (Creator), Aparicio-Maldonado, C. (Creator), Lindhoud, S. (Creator), Vervoort, J. J. M. (Creator), Brouns, S. J. J. (Creator) & Swarts, D. C. (Creator), Wageningen University & Research, 20 Dec 2021
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE191271
Dataset
Probing DNA - transcription factor interactions using single-molecule fluorescence detection in nanofluidic devices
Fontana, M. (Creator), Ivanovaite, Š. (Creator), Lindhoud, S. (Creator), van der Wijk, E. (Creator), Mathwig, K. (Creator), van den Berg, W. (Creator), Weijers, D. (Creator) & Hohlbein, J. (Creator), Wageningen University & Research, 16 Jul 2021
DOI: 10.5281/zenodo.5110578
Dataset
Design principles of a minimal auxin response system
Kato, H. (Creator), Mutte, S. K. (Creator), Suzuki, H. (Creator), Crespo, I. (Creator), Das, S. (Creator), Radoeva, T. (Creator), Fontana, M. (Creator), Yoshitake, Y. (Creator), Hainiwa, E. (Creator), van den Berg, W. (Creator), Lindhoud, S. (Creator), Ishizaki, K. (Creator), Hohlbein, J. (Creator), Borst, J. W. (Creator), Boer, R. (Creator), Nishihama, R. (Creator), Kohchi, T. (Creator) & Weijers, D. (Creator), Wageningen University & Research, 13 Jul 2019
https://www.ncbi.nlm.nih.gov/bioproject/554398
Dataset

Visualisation and characterization of protein folding events in vivo
Lindhoud, S. (PhD candidate), van Berkel, W. (Promotor) & van Mierlo, C. (Co-promotor)
24/09/07 → 12/09/12
Project: PhD

Simon Lindhoud

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Collaborations and top research areas from the last five years

Dive into details

One-shot design of functional protein binders with BindCraft

Evolutionary origins and functional diversification of Auxin Response Factors

Probing DNA - Transcription Factor Interactions Using Single-Molecule Fluorescence Detection in Nanofluidic Devices

Short prokaryotic Argonaute systems trigger cell death upon detection of invading DNA

Two-Component Nanoparticle Vaccine Displaying Glycosylated Spike S1 Domain Induces Neutralizing Antibody Response against SARS-CoV-2 Variants

SPARTA-related RNA and DNA

Probing DNA - transcription factor interactions using single-molecule fluorescence detection in nanofluidic devices

Design principles of a minimal auxin response system

Visualisation and characterization of protein folding events in vivo

Simon Lindhoud

Fingerprint

Collaborations and top research areas from the last five years

Research output

Datasets

Projects