Research output per year
Research output per year
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Dive into the research topics where Sandra Smit is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Exploring intra- and intergenomic variation in haplotype-resolved pangenomes
Jonkheer, E. M., de Ridder, D., van der Lee, T. A. J., de Haan, J. R., Berke, L. & Smit, S., 2025, In: Plant Biotechnology Journal. 23, 3, p. 874-886 13 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access1 Citation (Scopus) -
High-Quality Plant Genomes for and through Pangenomics
Papastolopoulou, C., Yang, Z., van Workum, F. J. M., Wijfjes, R. & Smit, S., 2025, Genome Assembly. Humana Press, Vol. 2955. p. 293-316 (Methods in Molecular Biology; vol. 2955).Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
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Multipla: Multiscale Pangenomic Locus Analysis
van den Brandt, A., Ståhlbom, E., van Workum, F. J. M., van de Wetering, H., Lundström, C., Smit, S. & Vilanova, A., 2025, In: Computer Graphics Forum. 44, 3, 12 p., e70147.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
Pangenomics to understand prophage dynamics in the Pectobacterium genus and the radiating lineages of Pectobacterium brasiliense
Pardeshi, L. A., van Duivenbode, I., Pel, M. J. C., Jonkheer, E. M., Kupczok, A., de Ridder, D., Smit, S. & van der Lee, T. A. J., 7 May 2025, In: Microbial Genomics. 11, 5, 001392.Research output: Contribution to journal › Article › Academic › peer-review
Open Access1 Citation (Scopus) -
Adaptation of Fusarium Head Blight Pathogens to Changes in Agricultural Practices and Human Migration
Yang, M., Smit, S., de Ridder, D., Feng, J., Liu, T., Xu, J., van der Lee, T. A. J., Zhang, H. & Chen, W., 25 Sept 2024, In: Advanced Science. 11, 36, 2401899.Research output: Contribution to journal › Article › Academic › peer-review
Open Access6 Citations (Scopus)
Datasets
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Dataset: Structural, functional and evolutionary characterisation of genes in Lactuca sp. reference genomes in the context of eudicots
van Workum, D.-J. M. (Creator), de Ridder, D. (Creator), Schranz, E. (Creator) & Smit, S. (Creator), Wageningen University & Research, 10 Dec 2024
DOI: 10.4121/af1b751d-23a2-4954-ac01-4eb6c68d895b
Dataset
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Dataset underlying the publication: "MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment"
van Workum, D.-J. M. (Creator), Dey, K. K. (Creator), Kozik, A. (Creator), Lavelle, D. (Creator), de Ridder, D. (Creator), Schranz, E. (Creator), Michelmore, R. (Creator) & Smit, S. (Creator), Wageningen University & Research, 17 Feb 2025
DOI: 10.4121/4b39da65-2eef-4e05-8583-25f8850cf932
Dataset
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Fusarium Genome sequencing
Yang, M. (Creator), Smit, S. (Creator), de Ridder, D. (Creator), Feng, J. (Creator), Liu, T. (Creator), Xu, J. (Creator), van der Lee, T. A. J. (Creator), Zhang, H. (Creator) & Chen, W. (Creator), Wageningen University & Research, 10 Jun 2022
https://www.ncbi.nlm.nih.gov/bioproject/847718
Dataset
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Pectobacterium genome sequencing for pangenomics
Jonkheer, E. (Creator), Brankovics, B. (Creator), Houwers, I. (Creator), van der Wolf, J. (Creator), Bonants, P. (Creator), Vreeburg, R. A. M. (Creator), Bollema, R. (Creator), de Haan, J. R. (Creator), Berke, L. (Creator), Smit, S. (Creator), de Ridder, D. (Creator) & van der Lee, T. (Creator), Wageningen Plant Research, 28 Jul 2020
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA649220
Dataset
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Data underlying the publication: "The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool"
Jonkheer, E. (Creator), Smit, S. (Creator), van der Lee, T. (Creator), Brankovics, B. (Creator), van der Wolf, J. (Creator) & Vreeburg, R. (Creator), Wageningen University & Research, 23 Feb 2021
DOI: 10.4121/14061122
Dataset
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Unraveling the genetic cause of color of longan fruit
Le, E. (PhD candidate), de Ridder, D. (Promotor) & Smit, S. (Co-promotor)
1/10/25 → …
Project: PhD
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Developing an efficient, dynamic and versatile pangenome representation to handle large-scale, complex genomic data across diverse taxonomic levels
Flege, P. (PhD candidate), de Ridder, D. (Promotor) & Smit, S. (Co-promotor)
1/12/24 → …
Project: PhD
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Mitigation of negative temperature effects on curd induction and quality in cauliflower
Syma, D. (PhD candidate), Bonnema, G. (Promotor), Immink, R. (Co-promotor) & Smit, S. (Co-promotor)
1/09/24 → …
Project: PhD
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Exploring genome evolution and differentiation of agronomical traits in Solanaceae: A pangenome approach
Papastolopoulou, C. (PhD candidate), de Ridder, D. (Promotor), Peters, S. (Co-promotor) & Smit, S. (Co-promotor)
1/06/22 → …
Project: PhD
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Lactuca Diversity and Evolution
Selvanayagam, S. (PhD candidate), Schranz, E. (Promotor) & Smit, S. (Co-promotor)
1/02/22 → …
Project: PhD