Research output per year
Research output per year
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Dive into the research topics where Sandra Smit is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Exploring intra- and intergenomic variation in haplotype-resolved pangenomes
Jonkheer, E. M., de Ridder, D., van der Lee, T. A. J., de Haan, J. R., Berke, L. & Smit, S., 2025, In: Plant Biotechnology Journal. 23, 3, p. 874-886 13 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access1 Citation (Scopus) -
High-Quality Plant Genomes for and through Pangenomics
Papastolopoulou, C., Yang, Z., van Workum, F. J. M., Wijfjes, R. & Smit, S., 2025, Genome Assembly. Humana Press, Vol. 2955. p. 293-316 (Methods in Molecular Biology; vol. 2955).Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
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Multipla: Multiscale Pangenomic Locus Analysis
van den Brandt, A., Ståhlbom, E., van Workum, F. J. M., van de Wetering, H., Lundström, C., Smit, S. & Vilanova, A., 2025, In: Computer Graphics Forum. 44, 3, 12 p., e70147.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
Pangenomics to understand prophage dynamics in the Pectobacterium genus and the radiating lineages of Pectobacterium brasiliense
Pardeshi, L. A., van Duivenbode, I., Pel, M. J. C., Jonkheer, E. M., Kupczok, A., de Ridder, D., Smit, S. & van der Lee, T. A. J., 7 May 2025, In: Microbial Genomics. 11, 5, 001392.Research output: Contribution to journal › Article › Academic › peer-review
Open Access1 Citation (Scopus) -
Adaptation of Fusarium Head Blight Pathogens to Changes in Agricultural Practices and Human Migration
Yang, M., Smit, S., de Ridder, D., Feng, J., Liu, T., Xu, J., van der Lee, T. A. J., Zhang, H. & Chen, W., 25 Sept 2024, In: Advanced Science. 11, 36, 2401899.Research output: Contribution to journal › Article › Academic › peer-review
Open Access6 Citations (Scopus)
Datasets
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Operophtera brumata isolate:WM2013NL Genome sequencing and assembly
Derks, M. F. L. (Creator), Smit, S. (Creator), Salis, L. (Creator), Schijlen, E. G. W. M. (Creator), Bossers, A. (Creator), Mateman, C. (Creator), Pijl, A. S. (Creator), de Ridder, D. (Creator), Groenen, M. A. M. (Creator), Visser, M. E. (Creator) & Megens, H. J. W. C. (Creator), Wageningen University & Research, 11 Aug 2015
https://www.ncbi.nlm.nih.gov/bioproject/263715
Dataset
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Beauveria bassiana Genome sequencing and assembly
Valero Jimenez, C. A. (Creator), Faino, L. (Creator), Spring in 'T Veld, D. (Creator), Smit, S. (Creator), Zwaan, B. J. (Creator) & van Kan, J. A. L. (Creator), Wageningen University, 8 Jul 2016
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA260878/
Dataset
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Pectobacterium genome sequencing for pangenomics
Jonkheer, E. (Creator), Brankovics, B. (Creator), Houwers, I. (Creator), van der Wolf, J. (Creator), Bonants, P. (Creator), Vreeburg, R. A. M. (Creator), Bollema, R. (Creator), de Haan, J. R. (Creator), Berke, L. (Creator), Smit, S. (Creator), de Ridder, D. (Creator) & van der Lee, T. (Creator), Wageningen Plant Research, 28 Jul 2020
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA649220
Dataset
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Data underlying the publication: "PanTools v3: functional annotation, classification, and phylogenomics "
Jonkheer, E. (Creator) & Smit, S. (Creator), Wageningen University & Research, 4 Jul 2022
DOI: 10.4121/19874485
Dataset
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Sequencing of transcriptomes of Brassicaceae species growing under contrasting irradiances
Garassino, F. (Creator), Bengoa Luoni, S. (Creator), Cumerlato, T. (Creator), Reyes Marquez, F. (Creator), Harbinson, J. (Creator), Aarts, M. G. M. (Creator), Nijveen, H. (Creator) & Smit, S. (Creator), Wageningen University & Research, 2 Aug 2023
https://www.ncbi.nlm.nih.gov/bioproject/1001172
Dataset
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Unraveling the genetic cause of color of longan fruit
Le, E. (PhD candidate), de Ridder, D. (Promotor) & Smit, S. (Co-promotor)
1/10/25 → …
Project: PhD
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Developing an efficient, dynamic and versatile pangenome representation to handle large-scale, complex genomic data across diverse taxonomic levels
Flege, P. (PhD candidate), de Ridder, D. (Promotor) & Smit, S. (Co-promotor)
1/12/24 → …
Project: PhD
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Mitigation of negative temperature effects on curd induction and quality in cauliflower
Syma, D. (PhD candidate), Bonnema, G. (Promotor), Immink, R. (Co-promotor) & Smit, S. (Co-promotor)
1/09/24 → …
Project: PhD
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Exploring genome evolution and differentiation of agronomical traits in Solanaceae: A pangenome approach
Papastolopoulou, C. (PhD candidate), de Ridder, D. (Promotor), Peters, S. (Co-promotor) & Smit, S. (Co-promotor)
1/06/22 → …
Project: PhD
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Lactuca Diversity and Evolution
Selvanayagam, S. (PhD candidate), Schranz, E. (Promotor) & Smit, S. (Co-promotor)
1/02/22 → …
Project: PhD