Sandra Smit

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13 Similar Researchers

Genome Medicine & Life Sciences

Genomics Medicine & Life Sciences

genome Agriculture & Biology

Genes Engineering & Materials Science

Lycopersicon esculentum Medicine & Life Sciences

Parasponia Agriculture & Biology

genomics Agriculture & Biology

Solanum Medicine & Life Sciences

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Research Output 2012 2019

20 Article
2 Abstract
1 Poster
1 Working paper

GeneNoteBook, a collaborative notebook for comparative genomics

Holmer, R., van Velzen, R., Geurts, R., Bisseling, T., de Ridder, D. & Smit, S., 15 Nov 2019, In : Bioinformatics (Oxford, England). 35, 22, p. 4779-4781 3 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Comparative Genomics

Genomics

Genome

Genes

Bioinformatics

Hecaton: Reliably detecting copy number variation in plant genomes using short read sequencing data

Wijfjes, R. Y., Smit, S. & De Ridder, D., 7 Nov 2019, In : BMC Genomics. 20, 1, 818.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Plant Genome

Lycopersicon esculentum

Workflow

Arabidopsis

Zea mays

Integrative pangenome analysis of the Pectobacterium genus

Jonkheer, E., Brankovics, B., Houwers, I. M., van der Wolf, J. M., Bonants, P. J. M., Vreeburg, R. A. M., Sheikhizadeh Anari, S., de Ridder, D., Smit, S. & van der Lee, T. A. J., Apr 2019.

Research output: Contribution to conference › Poster › Academic

38 Citations (Scopus)

Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

van Velzen, R., Holmer, R., Bu, F., Rutten, L. J. J., van Zeijl, A. L., Liu, W., Santuari, L., Cao, Q., Sharma, T., Shen, D., Purwana Roswanjaya, Y., Wardhani, T., Seifi Kalhor, M., Jansen, J., van den Hoogen, D. J., Güngör, B., Hartog, M. V., Hontelez, J., Verver, J., Yang, W-C. & 11 others, Schijlen, E. G. W. M., Repin, R., Schilthuizen, M., Schranz, M. E., Heidstra, R., Miyata, K., Fedorova, E., Kohlen, W., Bisseling, A. H. J., Smit, S. & Geurts, R., 15 May 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 20, p. E4700-E4709

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Parasponia

Rhizobium

symbiosis

nodulation

genomics

71 Citations (Scopus)

Computational pan-genomics: status, promises and challenges

Marschall, T., de Ridder, D., Sheikhizadeh Anari, S. & Smit, S., 1 Jan 2018, In : Briefings in Bioinformatics. 19, 1, p. 118-135

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Genomics

Genes

Genome

Computational Biology

Bioinformatics

Datasets

Beauveria bassiana Genome sequencing and assembly

Valero Jimenez, C. A. (Creator), Faino, L. (Creator), Spring in 'T Veld, D. (Creator), Smit, S. (Creator), Zwaan, B. (Creator), van Kan, J. (Creator), Wageningen University, 8 Jul 2016

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA260878/

Dataset

Data from: Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

van Velzen, R. (Creator), Holmer, R. (Creator), Bu, F. (Creator), Rutten, L. J. J. (Creator), van Zeijl, A. (Creator), Liu, W. (Creator), Santuari, L. (Creator), Cao, Q. (Creator), Sharma, T. (Creator), Shen, D. (Creator), Roswanjaya, Y. (Creator), Wardhani, T. (Creator), Seifi Kalhor, M. (Creator), Jansen, J. (Creator), van den Hoogen, D. J. (Creator), Gungor, B. (Creator), Hartog, M. (Creator), Hontelez, J. (Creator), Verver, J. W. G. (Creator), Yang, W. (Creator), Schijlen, E. (Creator), Repin, R. (Creator), Schilthuizen, M. (Creator), Schranz, E. (Creator), Heidstra, R. (Creator), Miyata, K. (Creator), Fedorova, E. (Creator), Kohlen, W. (Creator), Bisseling, T. (Creator), Smit, S. (Creator), Geurts, R. (Creator), Wageningen University & Research, 3 May 2018