Sandra Smit

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Research Output

20 Article
2 Abstract
1 Poster
1 Working paper

GeneNoteBook, a collaborative notebook for comparative genomics

Holmer, R., van Velzen, R., Geurts, R., Bisseling, T., de Ridder, D. & Smit, S., 15 Nov 2019, In : Bioinformatics (Oxford, England). 35, 22, p. 4779-4781 3 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

1 Citation (Scopus)

Hecaton: Reliably detecting copy number variation in plant genomes using short read sequencing data

Wijfjes, R. Y., Smit, S. & De Ridder, D., 7 Nov 2019, In : BMC Genomics. 20, 1, 818.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Integrative pangenome analysis of the Pectobacterium genus

Jonkheer, E., Brankovics, B., Houwers, I. M., van der Wolf, J. M., Bonants, P. J. M., Vreeburg, R. A. M., Sheikhizadeh Anari, S., de Ridder, D., Smit, S. & van der Lee, T. A. J., Apr 2019.

Research output: Contribution to conference › Poster

Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

van Velzen, R., Holmer, R., Bu, F., Rutten, L. J. J., van Zeijl, A. L., Liu, W., Santuari, L., Cao, Q., Sharma, T., Shen, D., Purwana Roswanjaya, Y., Wardhani, T., Seifi Kalhor, M., Jansen, J., van den Hoogen, D. J., Güngör, B., Hartog, M. V., Hontelez, J., Verver, J., Yang, W-C. & 11 others, Schijlen, E. G. W. M., Repin, R., Schilthuizen, M., Schranz, M. E., Heidstra, R., Miyata, K., Fedorova, E., Kohlen, W., Bisseling, A. H. J., Smit, S. & Geurts, R., 15 May 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 20, p. E4700-E4709

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

53 Citations (Scopus)

Computational pan-genomics: status, promises and challenges

Marschall, T., de Ridder, D., Sheikhizadeh Anari, S. & Smit, S., 1 Jan 2018, In : Briefings in Bioinformatics. 19, 1, p. 118-135

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

80 Citations (Scopus)

Datasets

Data from: Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

van Velzen, R. (Creator), Holmer, R. (Creator), Bu, F. (Creator), Rutten, L. J. J. (Creator), van Zeijl, A. L. (Creator), Liu, W. (Creator), Santuari, L. (Creator), Cao, Q. (Creator), Sharma, T. (Creator), Shen, D. (Creator), Roswanjaya, Y. (Creator), Wardhani, T. (Creator), Seifi Kalhor, M. (Creator), Jansen, J. (Creator), van den Hoogen, D. J. (Creator), Gungor, B. (Creator), Hartog, M. (Creator), Hontelez, J. (Creator), Verver, J. W. G. (Creator), Yang, W. (Creator), Schijlen, E. (Creator), Repin, R. (Creator), Schilthuizen, M. (Creator), Schranz, E. (Creator), Heidstra, R. (Creator), Miyata, K. (Creator), Fedorova, E. (Creator), Kohlen, W. (Creator), Bisseling, T. (Creator), Smit, S. (Creator), Geurts, R. (Creator), Wageningen University & Research, 3 May 2018

DOI: 10.5061/dryad.fq7gv88

Dataset

Beauveria bassiana Genome sequencing and assembly

Valero Jimenez, C. A. (Creator), Faino, L. (Creator), Spring in 'T Veld, D. (Creator), Smit, S. (Creator), Zwaan, B. (Creator), van Kan, J. (Creator), Wageningen University, 8 Jul 2016

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA260878/

Dataset