Research output per year
Research output per year
Fingerprint
Dive into the research topics where Sandra Smit is active. These topic labels come from the works of this person. Together they form a unique fingerprint. If staff members have published prior to their WUR affiliation, it is possible that the publication overview, Fingerprint and network diagram are incomplete.
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Network
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool
Jonkheer, E. M., Brankovics, B., Houwers, I. M., van der Wolf, J. M., Bonants, P. J. M., Vreeburg, R. A. M., Bollema, R., de Haan, J. R., Berke, L., Smit, S., de Ridder, D. & van der Lee, T. A. J., 14 Apr 2021, In: BMC Genomics. 22, 1, 265.Research output: Contribution to journal › Article › Academic › peer-review
Open Access4 Citations (Scopus) -
The development of a novel diagnostic PCR for Madurella mycetomatis using a comparative genome approach
Lim, W., Siddig, E., Eadie, K., Nyuykonge, B., Ahmed, S., Fahal, A., Verbon, A., Smit, S. & van de Sande, W. W. J., 1 Dec 2020, In: PLoS Neglected Tropical Diseases. 14, 12, e0008897.Research output: Contribution to journal › Article › Academic › peer-review
Open Access1 Citation (Scopus) -
GeneNoteBook, a collaborative notebook for comparative genomics
Holmer, R., van Velzen, R., Geurts, R., Bisseling, T., de Ridder, D. & Smit, S., 15 Nov 2019, In: Bioinformatics (Oxford, England). 35, 22, p. 4779-4781 3 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access2 Citations (Scopus) -
Hecaton
Wijfjes, R. & Smit, S., 2019Research output: Non-textual form › Software › Other research output
Open Access -
Hecaton: Reliably detecting copy number variation in plant genomes using short read sequencing data
Wijfjes, R. Y., Smit, S. & De Ridder, D., 7 Nov 2019, In: BMC Genomics. 20, 1, 818.Research output: Contribution to journal › Article › Academic › peer-review
Open Access1 Citation (Scopus)
Datasets
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Pectobacterium genome sequencing for pangenomics
Jonkheer, E. (Creator), Brankovics, B. (Creator), Houwers, I. (Creator), van der Wolf, J. (Creator), Bonants, P. (Creator), Vreeburg, R. A. M. (Creator), Bollema, R. (Creator), de Haan, J. R. (Creator), Berke, L. (Creator), Smit, S. (Creator), de Ridder, D. (Creator) & van der Lee, T. (Creator), Wageningen Plant Research, 28 Jul 2020
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA649220
Dataset
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Data from: Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses
van Velzen, R. (Creator), Holmer, R. (Creator), Bu, F. (Creator), Rutten, L. J. J. (Creator), van Zeijl, A. L. (Creator), Liu, W. (Creator), Santuari, L. (Creator), Cao, Q. (Creator), Sharma, T. (Creator), Shen, D. (Creator), Purwana Roswanjaya, Y. (Creator), Wardhani, T. (Creator), Seifi Kalhor, M. (Creator), Jansen, J. (Creator), van den Hoogen, J. (Creator), Gungor, B. (Creator), Hartog, M. (Creator), Hontelez, J. (Creator), Verver, J. W. G. (Creator), Yang, W. (Creator), Schijlen, E. (Creator), Repin, R. (Creator), Schilthuizen, M. (Creator), Schranz, E. (Creator), Heidstra, R. (Creator), Miyata, K. (Creator), Fedorova, E. (Creator), Kohlen, W. (Creator), Bisseling, T. (Creator), Smit, S. (Creator) & Geurts, R. (Creator), Wageningen University & Research, 3 May 2018
Dataset
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Data underlying the publication: "The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool"
Jonkheer, E. (Creator), Smit, S. (Creator), van der Lee, T. (Creator), Brankovics, B. (Creator), van der Wolf, J. (Creator) & Vreeburg, R. (Creator), Wageningen University & Research, 23 Feb 2021
DOI: 10.4121/14061122
Dataset
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Beauveria bassiana Genome sequencing and assembly
Valero Jimenez, C. A. (Creator), Faino, L. (Creator), Spring in 'T Veld, D. (Creator), Smit, S. (Creator), Zwaan, B. (Creator) & van Kan, J. (Creator), Wageningen University, 8 Jul 2016
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA260878/
Dataset
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84 tomato accessions - Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing
Aflitos, S. (Creator), Schijlen, E. (Creator), de Jong, H. (Creator), de Ridder, D. (Creator), Smit, S. (Creator), Finkers, R. (Creator), Bakker, F. (Creator), van de Geest, H. (Creator), te Lintel Hekkert, B. (Creator), van Haarst, J. (Creator), Smits, L. (Creator), Koops, A. (Creator), Sanchez-Perez, M. J. (Creator), van Heusden, S. (Creator), Visser, R. (Creator), Schranz, E. (Creator) & Peters, S. (Creator), Plant Research International, 29 Jan 2014
https://www.ebi.ac.uk/ena/browser/view/PRJEB5235
Dataset
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Pangenome mining for quarantine organisms
Pardeshi, L., Smit, S., de Ridder, D. & van der Lee, T.
21/10/21 → …
Project: PhD
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An integrative analysis of variation in Lactuca.
van Workum, D. M., Schranz, E., Smit, S. & de Ridder, D.
1/11/20 → …
Project: PhD