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Research Output 1996 2020

2020

Aphid resistance in Capsicum maps to a locus containing LRR-RLK gene analogues

Sun, M., Voorrips, R. E., van’t Westende, W., van Kaauwen, M., Visser, R. G. F. & Vosman, B., Jan 2020, In : Theoretical and Applied Genetics. 133, 1, p. 227-237

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Capsicum
Aphids
Aphidoidea
quantitative trait loci
loci

The ability to manipulate ROS metabolism in pepper may affect aphid virulence

Sun, M., Voorrips, R. E., van Kaauwen, M., Visser, R. G. F. & Vosman, B., 1 Jan 2020, In : Horticulture Research. 7, 1, 6.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Aphids
sweet peppers
Metabolism
Virulence
Aphidoidea
2019

FitTetra 2.0 - Improved genotype calling for tetraploids with multiple population and parental data support

Zych, K., Gort, G., Maliepaard, C. A., Jansen, R. C. & Voorrips, R. E., 20 Mar 2019, In : BMC Bioinformatics. 20, 1, 148.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Genotype
Software
Population
Proportion
4 Citations (Scopus)

Genetic variation in phytochemicals in leaves of pepper (Capsicum) in relation to thrips resistance

Maharijaya, A., Vosman, B., Pelgrom, K., Wahyuni, Y., de Vos, R. C. H. & Voorrips, R. E., Feb 2019, In : Arthropod-Plant Interactions. 13, 1, p. 1-9

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
thrips
Capsicum
sweet peppers
Thysanoptera
phytopharmaceuticals
5 Citations (Scopus)

QTL mapping of insect resistance components of Solanum galapagense

Vosman, B., Kashaninia, A., van’t Westende, W., Meijer-Dekens, F., van Eekelen, H., Visser, R. G. F., de Vos, R. C. H. & Voorrips, R. E., Feb 2019, In : Theoretical and Applied Genetics. 132, 2, p. 531–541

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Solanum galapagense
Trichomes
Solanum
trichomes
Insects

Quantifying the Power and Precision of QTL Analysis in Autopolyploids Under Bivalent and Multivalent Genetic Models

Bourke, P. M., Hackett, C. A., Voorrips, R. E., Visser, R. G. F. & Maliepaard, C., 9 Jul 2019, In : G3 (Bethesda, Md.). 9, 7, p. 2107-2122 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Quantitative Trait Loci
Genetic Models
Meiosis
Solanum tuberosum
Polyploidy
1 Citation (Scopus)

Some thoughts on how to use markers in tetraploid rose breeding

Smulders, M. J. M., van de Weg, W. E., Bourke, P. M., Voorrips, R. E., Arens, P. & Maliepaard, C., 1 Jan 2019, In : Acta Horticulturae. 1232, p. 1-6

Research output: Contribution to journalArticleAcademicpeer-review

tetraploidy
Rosa
alleles
breeding
genotyping
1 Citation (Scopus)

The effect of plant development on thrips resistance in Capsicum

van Haperen, P., Voorrips, R. E., van Loon, J. J. A. & Vosman, B., Feb 2019, In : Arthropod-Plant Interactions. 13, 1, p. 11–18

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
thrips
Capsicum
Thysanoptera
plant development
leaves
2018
34 Citations (Scopus)

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

Hibrand Saint-Oyant, L., Ruttink, T., Hamama, L., Kirov, I., Lakhwani, D., Zhou, N. N., Bourke, P. M., Daccord, N., Leus, L., Schulz, D., van de Geest, H., Hesselink, T., Van Laere, K., Debray, K., Balzergue, S., Thouroude, T., Chastellier, A., Jeauffre, J., Voisine, L., Gaillard, S. & 21 others, Borm, T. J. A., Arens, P., Voorrips, R. E., Maliepaard, C., Neu, E., Linde, M., Le Paslier, M. C., Bérard, A., Bounon, R., Clotault, J., Choisne, N., Quesneville, H., Kawamura, K., Aubourg, S., Sakr, S., Smulders, M. J. M., Schijlen, E., Bucher, E., Debener, T., De Riek, J. & Foucher, F., 2018, In : Nature Plants. 4, p. 473-484

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Rosa chinensis
Rosa
genome
plant spines
doubled haploids
1 Citation (Scopus)

Aphid populations showing differential levels of virulence on Capsicum accessions

Sun, M., Voorrips, R. E. & Vosman, B., 23 Oct 2018, In : Insect Science. 27, 2, p. 336-348

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Capsicum
Aphids
virulence
aphid
Virulence
9 Citations (Scopus)
Open Access
Solanum galapagense
Lycopersicon esculentum
Trichomes
Insects
Solanum
1 Citation (Scopus)

Combining QTL mapping with transcriptome and metabolome profiling reveals a possible role for ABA signaling in resistance against the cabbage whitefly in cabbage

Broekgaarden, C., Pelgrom, K. T. B., Bucher, J., van Dam, N. M., Grosser, K., Pieterse, C. M. J., van Kaauwen, M., Steenhuis, G., Voorrips, R. E., de Vos, M., Vosman, B., Worrich, A. & van Wees, S. C. M., 6 Nov 2018, In : PLoS ONE. 13, 11, e0206103.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
metabolome
Abscisic Acid
Hemiptera
Metabolome
Brassica

Corrigendum: PolymapR - Linkage analysis and genetic map construction from F 1 populations of outcrossing polyploids

Bourke, P. M., Van Geest, G., Voorrips, R. E., Jansen, J., Kranenburg, T., Shahin, A., Visser, R. G. F., Arens, P., Smulders, M. J. M. & Maliepaard, C., 15 Oct 2018, In : Bioinformatics. 35, 3, p. 540-540

Research output: Contribution to journalComment/Letter to the editorAcademic

Likelihood Functions
Linkage Analysis
Genetic Linkage
Polyploidy
Population
8 Citations (Scopus)

Multi-environment QTL analysis of plant and flower morphological traits in tetraploid rose

Bourke, P. M., Gitonga, V. W., Voorrips, R. E., Visser, R. G. F., Krens, F. A. & Maliepaard, C., Oct 2018, In : Theoretical and Applied Genetics. 131, 10, p. 2055–2069

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Quantitative Trait Loci
tetraploidy
quantitative trait loci
Rosa
9 Citations (Scopus)

PolymapR-linkage analysis and genetic map construction from F1 populations of outcrossing polyploids

Bourke, P. M., van Geest, G., Voorrips, R. E., Jansen, J., Kranenburg, T., Shahin, A., Visser, R. G. F., Arens, P., Smulders, M. J. M. & Maliepaard, C., 15 Oct 2018, In : Bioinformatics. 34, 20, p. 3496-3502

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Linkage Analysis
Genetic Linkage
Polyploidy
Chrysanthemum
Crops
5 Citations (Scopus)

Reduced phloem uptake of Myzus persicae on an aphid resistant pepper accession

Sun, M., Voorrips, R. E., Steenhuis-Broers, G., van't Westende, W. & Vosman, B., 27 Jun 2018, In : BMC Plant Biology. 18, 1, 138.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Myzus persicae
pepper
phloem
Aphidoidea
uptake mechanisms

Resistentie tegen bladluizen in paprika

Vosman, B., Sun, M., van 't Westende, W. P. C. & Voorrips, R. E., 18 Jan 2018.

Research output: Contribution to conferencePosterProfessional

19 Citations (Scopus)

Tools for Genetic Studies in Experimental Populations of Polyploids

Bourke, P. M., Voorrips, R. E., Visser, R. G. F. & Maliepaard, C. A., 18 Apr 2018, In : Frontiers in Plant Science. 9, 513.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
polyploidy
inheritance (genetics)
chromosome mapping
alleles
chromosomes
2017
19 Citations (Scopus)

An ultra-dense integrated linkage map for hexaploid chrysanthemum enables multi-allelic QTL analysis

van Geest, G., Bourke, P. M., Voorrips, R. E., Marasek-Ciolakowska, A., Liao, Y., Post, A., van Meeteren, U., Visser, R. G. F., Maliepaard, C. & Arens, P., Dec 2017, In : Theoretical and Applied Genetics. 130, 12, p. 2527-2541

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chrysanthemum
hexaploidy
Lettuce
chromosome mapping
quantitative trait loci

Bladluisresistentie in Paprika: Groene Veredeling Paprika

Sun, M., Voorrips, R. E., van 't Westende, W. P. C. & Vosman, B., Jun 2017, 2 p. Wageningen : Wageningen University & Research.

Research output: Other contributionPamphlet

Open Access
15 Citations (Scopus)

Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP array

van Geest, G., Voorrips, R. E., Esselink, D., Post, A., Visser, R. G. F. & Arens, P., 2017, In : BMC Genomics. 18, 585.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chrysanthemum
Single Nucleotide Polymorphism
RNA Sequence Analysis
Alleles
Genotype
Open Access
DNA Shuffling
Chromosomes, Human, Pair 2
Genetic Structures
Prunus avium
Haplotypes
31 Citations (Scopus)

Evaluation of LD decay and various LD-decay estimators in simulated and SNP-array data of tetraploid potato

Vos, P. G., Paulo, M. J., Voorrips, R. E., Visser, R. G. F., van Eck, H. J. & van Eeuwijk, F. A., 2017, In : Theoretical and Applied Genetics. 130, 1, p. 123-135

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Linkage Disequilibrium
Solanum tuberosum
linkage disequilibrium
tetraploidy
50 Citations (Scopus)

Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping

Thoen, H. P. M., Davila Olivas, N. H., Kloth, K. J., Coolen, S., Huang, P., Aarts, M. G. M., Molenaar, J. A., Bakker, J., Bouwmeester, H. J., Broekgaarden, C., Bucher, J., Busscher-Lange, J., Cheng, X., van Dijk-Fradin, E. F., Jongsma, M. A., Julkowska, M. M., Keurentjes, J. J. B., Ligterink, W., Pieterse, C. M. J., Ruyter-Spira, C. P. & 13 others, Smant, G., van Schaik, C. C., van Wees, S. C. M., Visser, R. G. F., Voorrips, R. E., Vosman, B., Vreugdenhil, D., Warmerdam, S., Wiegers, G. L., van Heerwaarden, J., Kruijer, W. T., van Eeuwijk, F. A. & Dicke, M., 2017, In : New Phytologist. 213, 3, p. 1346-1362

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
plant stress
stress tolerance
chromosome mapping
Genome
single nucleotide polymorphism
12 Citations (Scopus)

Genetic structure of a QTL hotspot on chromosome 2 in sweet cherry indicates positive selection for favorable haplotypes

Cai, L., Voorrips, R. E., van de Weg, E., Peace, C. & Iezzoni, A., 2017, In : Molecular Breeding. 37, 7, 10 p., 85.

Research output: Contribution to journalArticleAcademicpeer-review

Chromosomes, Human, Pair 2
Genetic Structures
Quantitative Trait Loci
Prunus avium
Haplotypes
13 Citations (Scopus)

Genome-wide association analysis for lodging tolerance and plant height in a diverse European hexaploid oat collection

Tumino, G., Voorrips, R. E., Morcia, C., Ghizzoni, R., Germeier, C. U., Caldas Paulo, J., Terzi, V. & Smulders, M. J. M., 2017, In : Euphytica. 213, 8, 163.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome-Wide Association Study
lodging
hexaploidy
oats
Single Nucleotide Polymorphism
26 Citations (Scopus)

Partial preferential chromosome pairing is genotype dependent in tetraploid rose

Bourke, P. M., Arens, P., Voorrips, R. E., Esselink, D., Koning-Boucoiran, C. F. S., van 't Westende, W., Santos Leonardo, T., Wissink, P., Zheng, C., van Geest, G., Visser, R. G. F., Krens, F. A., Smulders, R. & Maliepaard, C., 2017, In : The Plant Journal. 90, 2, p. 330-343

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chromosome Pairing
chromosome pairing
Tetraploidy
tetraploidy
Rosa

Reduced phloem uptake of Myzus persicae on an aphid resistant pepper accession

Sun, M., Voorrips, R. E., van 't Westende, W. P. C. & Vosman, B., Jun 2017.

Research output: Contribution to conferencePosterAcademic

Resistentie tegen bladluizen in paprika

Vosman, B., Sun, M., van 't Westende, W. P. C. & Voorrips, R. E., 18 Jan 2017.

Research output: Contribution to conferencePosterAcademic

2016
31 Citations (Scopus)

A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species

Di Pierro, E. A., Gianfranceschi, L., Di Guardo, M., Koehorst-Van Putten, H. J. J., Kruisselbrink, J. W., Longhi, S., Troggio, M., Bianco, L., Muranty, H., Pagliarani, G., Bink, M. C. A. M., Voorrips, R. E. & van de Weg, E., 2016, In : Horticulture Research. 3, 16057.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
outcrossing
Polymorphism
single nucleotide polymorphism
Single Nucleotide Polymorphism
4 Citations (Scopus)

Antibiosis resistance against larval cabbage root fly, Delia radicum, in wild Brassica-species

Wang, S., Voorrips, R. E., Steenhuis-Broers, G., Vosman, B. & van Loon, J. J. A., 1 Jun 2016, In : Euphytica. 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Antibiosis
Delia radicum
antibiosis
Brassica
Diptera

Aphid resistance in a Capsicum collection

Voorrips, R. E., Steenhuis-Broers, M. M., van 't Westende, W. P. C. & Vosman, B., 2016, 2016 Proceedings of the XVIth EUCARPIA Capsicum and Eggplant Working Group Meeting. Ertsey-Peregi, K., Fustos, Z., Palotas, G. & Csillery, G. (eds.). Budapest, Hungary: Eucarpia

Research output: Chapter in Book/Report/Conference proceedingConference paper

Capsicum
Aphidoidea
pepper
genetic resistance
Myzus persicae
14 Citations (Scopus)

Genome-wide association analysis of the anthocyanin and carotenoid contents of rose petals

Schulz, D. F., Schott, R. T., Voorrips, R. E., Smulders, R., Linde, M. & Debener, T., 2016, In : Frontiers in Plant Science. 7, DECEMBER2016, 1798.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
corolla
anthocyanins
carotenoids
Rosa
ornamental plants
20 Citations (Scopus)
Open Access
base maps
Tetraploidy
tetraploidy
chromosome mapping
gardens
10 Citations (Scopus)

Integrating haplotype-specific linkage maps in tetraploid species using SNP markers

Bourke, P. M., Voorrips, R. E., Kranenburg, T., Jansen, H., Visser, R. G. F. & Maliepaard, C., 2016, In : Theoretical and Applied Genetics. 129, 11, p. 2211-2226 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Solanum tuberosum
Haplotypes
tetraploidy
chromosome mapping
20 Citations (Scopus)

PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees

Voorrips, R. E., Bink, M. C. A. M., Kruisselbrink, J. W., Koehorst-van Putten, H. J. J. & van de Weg, E., 2016, In : Molecular Breeding. 36, 119.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Pedigree
pedigree
Haplotypes
Single Nucleotide Polymorphism
haplotypes
13 Citations (Scopus)

Population structure and genome-wide association analysis for frost tolerance in oat using continuous SNP array signal intensity ratios

Tumino, G., Voorrips, R. E., Rizza, F., Badeck, F. W., Morcia, C., Ghizzoni, R., Germeier, C. U., Paulo, M. J., Terzi, V. & Smulders, M. J. M., 2016, In : Theoretical and Applied Genetics. 129, 9, p. 1711-1724

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
frost resistance
Genome-Wide Association Study
Single Nucleotide Polymorphism
oats
population structure
14 Citations (Scopus)

Probabilistic Multilocus Haplotype Reconstruction in Outcrossing Tetraploids

Zheng, C., Voorrips, R. E., Jansen, J., Hackett, C. A., Ho, J. & Bink, M. C. A. M., 2016, In : Genetics. 203, 1, p. 119-131

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Haplotypes
Chromosome Pairing
Polyploidy
Solanum tuberosum

Using phenomics and genomics to unlock landrace and wild relative diversity for crop improvement

Vosman, B., Pelgrom, K. T. B., Sharma, G., Voorrips, R. E., Broekgaarden, C., Pritchard, J., May, S., Adobor, S., Castellanos-Uribe, M., van Kaauwen, M. P. W., Finkers, H. J., Janssen, B., van Workum, W. & Ford-Lloyd, B., 2016, Enhancing crop genepool use: capturing wild relative and landrace diversity for crop improvement. Maxted, N., Dulloo, M. E. & Ford-Lloyd, B. V. (eds.). CABI, p. 1-9

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

wild relatives
Aleyrodidae
landraces
Brevicoryne brassicae
plant genetic resources
2015

A case study on constructing a rearranged physical and genetic SNP marker map for tetraploid alfalfa

Voorrips, R. E., Jansen, J., Ho, J. & Bink, M. C. A. M., 2015, p. 100-100.

Research output: Contribution to conferenceAbstractAcademic

50 Citations (Scopus)

Development and analysis of an 20K SNP array for potato (Solanum tuberosum): An insight in the breeding history

Vos, P. G., Uitdewilligen, J. G. A. M. L., Voorrips, R. E., Visser, R. G. F. & van Eck, H. J., 2015, In : Theoretical and Applied Genetics. 128, 12, p. 2387-2401

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Solanum tuberosum
Breeding
Single Nucleotide Polymorphism
potatoes
history
5 Citations (Scopus)

Development of the WagRhSNP AXIOM SNP Array Based on Sequences from Tetraploid Cut Roses and Garden Roses

Smulders, M. J. M., Voorrips, R. E., Esselink, G., Santos Leonardo, T. M., van 't Westende, W. P. C., Vukosavljev, M., Koning-Boucoiran, C. F. S., van de Weg, W. E., Arens, P. F. P., Schulz, D., Debener, T., Bellon, L., Mittmann, M., Pirani, A., Webster, T., Brew, F., Cox, P. & Maliepaard, C. A., 2015, Proceedings VIth International Symposiul on Rose Research and Cultivation. Debener, T. & Linde, M. (eds.). ISHS, Vol. 1064. p. 177-184

Research output: Chapter in Book/Report/Conference proceedingConference paperAcademicpeer-review

tetraploidy
gardens
Rosa
alleles
vegetable crops

Haplotype allele assignment and imputation in pedigrees

Voorrips, R. E., Bink, M. C. A. M., Kruisselbrink, J. W., Koehorst-van Putten, H. J. J. & van de Weg, W. E., 2015, Book of abstracts EUCARPIA: 16th Meeting of EUCARPIA Section Biometrics for Plant Breeding. Wageningen: Eucarpia, p. 101-101

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

pedigree
haplotypes
alleles
quantitative trait loci
genotype

Haplotype allele assignment and imputation in pedigrees

Voorrips, R. E., Bink, M. C. A. M., Kruisselbrink, J. W., Koehorst-van Putten, H. J. J. & van de Weg, W. E., 2015.

Research output: Contribution to conferencePosterAcademic

13 Citations (Scopus)

Host plant resistance towards the cabbage whitefly in Brassica oleracea and its wild relatives

Pelgrom, K. T. B., Broekgaarden, C., Voorrips, R. E., Bas, N., Visser, R. G. F. & Vosman, B. J., 2015, In : Euphytica. 202, 2, p. 297-306

Research output: Contribution to journalArticleAcademicpeer-review

Hemiptera
Brassica
wild relatives
Brassica oleracea
Aleyrodidae
6 Citations (Scopus)
Open Access
Hemiptera
gene interaction
Brassica
Aleyrodidae
Arabidopsis

Pedigree Based Analyses: A powerful approach for QTL discovery in pedigreed breeding germplasm and support on breeding decisions

van de Weg, W. E., Bink, M. C. A. M., Voorrips, R. E., Kruisselbrink, J. W., Jansen, H., Pikunova, A., Serova, Z. M., Krasova, N. G., Sedov, E. & Laurens, F., 2015, In : Contemporary Horticulture. 14, 2, p. 12-19

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Phenomics and genomics tools for facilitating brassica crop improvement

Vosman, B. J., Pelgrom, K. T. B., Sharma, G., Voorrips, R. E., Broekgaarden, C., Pritchard, J., May, S., Adobor, S., Castellanos-Uribe, M., van Kaauwen, M. P. W., Janssen, B., van Workum, W. & Ford-Lloyd, B., 2015, In : Crop Wild Relative. 10, p. 12-14

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

QTL mapping of thrips resistance in pepper

Maharijaya, A., Vosman, B. J., Steenhuis-Broers, M. M., Pelgrom, K. T. B., Purwito, A., Visser, R. G. F. & Voorrips, R. E., 2015, In : Theoretical and Applied Genetics. 128, 10, p. 1945-1956

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Thysanoptera
Capsicum
sweet peppers
quantitative trait loci
Thrips (Thripidae)