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Research Output 2007 2019

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Article
2019
10 Citations (Scopus)

A remote cis-regulatory region is required for nin expression in the pericycle to initiate nodule primordium formation in medicago truncatula

Liu, J., Rutten, L., Limpens, E., Van Der Molen, T., Van Velzen, R., Chen, R., Chen, Y., Geurts, R., Kohlen, W., Kulikova, O. & Bisseling, T., Jan 2019, In : Plant Cell. 31, 1, p. 68-83

Research output: Contribution to journalArticleAcademicpeer-review

Medicago truncatula
Cytokinins
Nucleic Acid Regulatory Sequences
cytokinins
Organogenesis
10 Citations (Scopus)

A Resurrected Scenario: Single Gain and Massive Loss of Nitrogen-Fixing Nodulation

van Velzen, R., Doyle, J. J. & Geurts, R., 2019, In : Trends in Plant Science. 24, 1, p. 49-57

Research output: Contribution to journalArticleAcademicpeer-review

nodulation
root nodules
nitrogen
nitrogen-fixing bacteria
symbiosis

Born migrators: Historical biogeography of the cosmopolitan family Cannabaceae

Jin, J. J., Yang, M. Q., Fritsch, P. W., van Velzen, R., Li, D. Z. & Yi, T. S., 23 Nov 2019, In : Journal of Systematics and Evolution.

Research output: Contribution to journalArticleAcademicpeer-review

Cannabaceae
biogeography
disjunct distribution
tropical region
tropics
1 Citation (Scopus)

GeneNoteBook, a collaborative notebook for comparative genomics

Holmer, R., van Velzen, R., Geurts, R., Bisseling, T., de Ridder, D. & Smit, S., 15 Nov 2019, In : Bioinformatics (Oxford, England). 35, 22, p. 4779-4781 3 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Comparative Genomics
Genomics
Genome
Genes
Bioinformatics
Open Access
Cell Division
Seeds
Stem Cells
Brassicaceae
Arabidopsis
2018

Comparative analysis of the nodule transcriptomes of ceanothus thyrsiflorus (rhamnaceae, rosales) and datisca glomerata (Datiscaceae, Cucurbitales)

Salgado, M. G., van Velzen, R., Nguyen, T. V., Battenberg, K., Berry, A. M., Lundin, D. & Pawlowski, K., 1 Jan 2018, In : Frontiers in Plant Science. 871, 1629.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Arginine
Metabolism
Gene encoding
Biosynthesis
Nitrogen
45 Citations (Scopus)

Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

van Velzen, R., Holmer, R., Bu, F., Rutten, L. J. J., van Zeijl, A. L., Liu, W., Santuari, L., Cao, Q., Sharma, T., Shen, D., Purwana Roswanjaya, Y., Wardhani, T., Seifi Kalhor, M., Jansen, J., van den Hoogen, D. J., Güngör, B., Hartog, M. V., Hontelez, J., Verver, J., Yang, W-C. & 11 others, Schijlen, E. G. W. M., Repin, R., Schilthuizen, M., Schranz, M. E., Heidstra, R., Miyata, K., Fedorova, E., Kohlen, W., Bisseling, A. H. J., Smit, S. & Geurts, R., 15 May 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 20, p. E4700-E4709

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Parasponia
Rhizobium
symbiosis
nodulation
genomics
4 Citations (Scopus)

Comparative transcriptome analysis of Poncirus trifoliata identifies a core set of genes involved in arbuscular mycorrhizal symbiosis

An, J., Sun, M., van Velzen, R., Ji, C., Zheng, Z., Limpens, E., Bisseling, T., Deng, X., Xiao, S. & Pan, Z., 12 Oct 2018, In : Journal of Experimental Botany. 69, 21, p. 5255-5264

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Poncirus
Poncirus trifoliata
Symbiosis
Gene Expression Profiling
transcriptomics
2017

Commonalities in Symbiotic Plant-Microbe Signalling

Holmer, R., Rutten, L. J. J., Kohlen, W., van Velzen, R. & Geurts, R., 2017, In : Advances in Botanical Research. 82, p. 187-221

Research output: Contribution to journalArticleAcademicpeer-review

microorganisms
microsymbionts
Frankia
Rhizobium
flavonoids
3 Citations (Scopus)

Draft genome sequence of the nitrogen-fixing Rhizobium sullae type strain IS123T focusing on the key genes for symbiosis with its host Hedysarum coronarium L.

Sablok, G., Rosselli, R., Seeman, T., van Velzen, R., Polone, E., Giacomini, A., La Porta, N., Geurts, R., Muresu, R. & Squartini, A., 2017, In : Frontiers in Microbiology. 8, JUL, 1348.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Rhizobium
Symbiosis
Nitrogen
Genome
Genes
2015
5 Citations (Scopus)

Phylogenetics of African Rinorea (Violaceae): Elucidating Infrageneric Relationships using Plastid and Nuclear DNA Sequences

van Velzen, R., Wahlert, G. A., Sosef, M. S. M., Onstein, R. E. & Bakker, F. T., 2015, In : Systematic Botany. 40, 1, p. 174-184

Research output: Contribution to journalArticleAcademicpeer-review

Violaceae
Rinorea
Plastids
plastid DNA
plastid
2014
1 Citation (Scopus)

Annonaceae substitution rates - a codon model perspective

Chatrou, L. W., Pirie, M. D., van Velzen, R. & Bakker, F. T., 2014, In : Revista Brasileira de Fruticultura. 36, edição especial, e., p. 108-117

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Annonaceae
codons
Codon
phylogeny
Chloroplast Genes
6 Citations (Scopus)

Rinorea calcicola (Violaceae), an endangered new species from south-eastern Gabon

van Velzen, R. & Wieringa, J. J., 2014, In : Phytotaxa. 167, 3, p. 267-275

Research output: Contribution to journalArticleAcademicpeer-review

Rinorea
Violaceae
Gabon
endemic species
fruit
153 Citations (Scopus)

Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus

Lin, K., Limpens, E. H. M., Zhang, Z., Ivanov, S., Saunders, D. G. O., Mu, D., Pang, E., Cao, H., Cha, H., Lin, T., Zhou, Q., Shang, Y., Li, Y., Sharma, T. C., van Velzen, R., de Ruijter, N. C. A., Aanen, D. K., Win, J., Kamoun, S., Bisseling, T. & 2 others, Geurts, R. & Huang, S. W., 2014, In : Plos Genetics. 10, 1, 13 p., e1004078.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Fungi
genome
fungus
Genome
fungi
2013
48 Citations (Scopus)

BLOG 2.0: a software system for character-based species classification with DNA Barcode sequences. What it does, how to use it

Weitschek, E., van Velzen, R., Felici, G. & Bertolazzi, P., 2013, In : Molecular Ecology Resources. 13, 6, p. 1043-1046

Research output: Contribution to journalArticleAcademicpeer-review

barcoding
DNA barcoding
Software
software
DNA
13 Citations (Scopus)

Effects of changing climate on species diversification in tropical forest butterflies of the genus Cymothoe (Lepidoptera: Nymphalidae)

van Velzen, R., Wahlberg, N., Sosef, M. S. M. & Bakker, F. T., 2013, In : Biological Journal of the Linnean Society. 108, 3, p. 546-564

Research output: Contribution to journalArticleAcademicpeer-review

Nymphalidae
butterfly
butterflies
tropical forests
tropical forest
31 Citations (Scopus)

Molecular phylogenetics and character evolution of Cannabaceae

Yang, M. Q., van Velzen, R., Bakker, F. T., Sattarian, A., Li, D. Z. & Yi, T. S., 2013, In : Taxon. 62, 3, p. 473-485

Research output: Contribution to journalArticleAcademicpeer-review

Cannabaceae
phylogenetics
phylogeny
plastid
Parasponia
2012
102 Citations (Scopus)

DNA Barcoding of Recently Diverged Species: Relative Performance of Matching Methods

van Velzen, R., Weitschek, E., Felici, G. & Bakker, F. T., 2012, In : PLoS ONE. 7, 1, 12 p., e30490.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
DNA barcoding
population size
Population Density
barcoding
DNA
2009
22 Citations (Scopus)

Allopatric origin of cryptic butterfly species that were discovered feeding on distinct host plants in sympatry.

McBride, L. C., van Velzen, R. & Larsen, T. B., 2009, In : Molecular Ecology. 18, 17, p. 3639-3651

Research output: Contribution to journalArticleAcademicpeer-review

Sympatry
Cameroon
Butterflies
sympatry
butterfly
13 Citations (Scopus)

A new hidden species of the Cymothoe caenis-complex (Lepidoptera: Nymphalidae) from western Africa

van Velzen, R., Larsen, T. B. & Bakker, F. T., 2009, In : Zootaxa. 2197, p. 53-63

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Caenis
Nymphalidae
Western Africa
Lepidoptera
new species