1994 …2020

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

2011

Metabolomics of a model fruit: tomato

de Vos, R. C. H., Hall, R. D. & Moing, A., 2011, The Biology of Plant Metabolomics . Annual Plant Reviews. Oxford: Blackwell/Wiley, p. 109-156 405 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

18 Citations (Scopus)

Plant Metabolomics and Its Potential for Systems Biology Research: Background Concepts, Technology, and Methodology

Allwood, J. W., de Vos, C. H., Moing, A., Deborde, C., Erban, A., Kopka, J., Goodacre, R. & Hall, R. D., 2011, Methods in Systems Biology. Jameson, D., Verma, M. & Westerhoff, H. V. (eds.). p. 299-336 (Methods in Enzymology; no. 500).

Research output: Chapter in Book/Report/Conference proceedingChapter

49 Citations (Scopus)
77 Citations (Scopus)
20 Citations (Scopus)

Reconstitution of the Costunolide Biosynthetic Pathway in Yeast and Nicotiana benthamiana.

Liu, Q., Majdi, M., Cankar, K., Goedbloed, M. A., Charnikhova, T., Verstappen, F. W. A., de Vos, R. C. H., Beekwilder, M. J., van der Krol, S. & Bouwmeester, H. J., 2011, In : PLoS ONE. 6, 8, 12 p., e23255.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
56 Citations (Scopus)

The patterns of population differentiation in a Brassica rapa core collection

Pino del Carpio, D., Basnet, R. K., de Vos, R. C. H., Maliepaard, C. A., Visser, R. G. F. & Bonnema, A. B., 2011, In : Theoretical and Applied Genetics. 122, 6, p. 1105-1118

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
42 Citations (Scopus)

The role of metabolomics in plant studies – views on sampling and data acquisition

Allwood, J. W., Moing, A., de Vos, C. H., Deborde, C., Kokpa, J. & Hall, R. D., 2011, Methods in Systems Biology. Westerhoff, H., Verma, M. & Jameson, D. (eds.). (Methods in Systems Biology; no. 500).

Research output: Chapter in Book/Report/Conference proceedingChapter

Tomatinase from Cladosporium fulvum is required for full virulence by degrading a-tomatine during tomato infection

Ökmen, B., Etalo, D. W., Collemare, J., Stergiopoulos, I., de Vos, R. C. H., Joosten, M. H. A. J. & de Wit, P. J. G. M., 2011, Book of Abstracts of the EPS PhD Autumn School 'Host-Microbe Interactomics', Wageningen, The Netherlands, 1-3 November 2011. Wageningen, The Netherlands, p. 37-38

Research output: Chapter in Book/Report/Conference proceedingAbstract

Transcriptomic profiling of citrus fruit peel tissues reveals fundamental effects of phenylpropanoids and ethylene on induced resistance

Ballester Frutos, A. R., Lafuente, M. T., Forment, J., Gadea, J., de Vos, C. H. R., Bovy, A. G. & Gonzalez-Candelas, L., 2011, In : Molecular Plant Pathology. 12, 9, p. 879-897

Research output: Contribution to journalArticleAcademicpeer-review

48 Citations (Scopus)
2012

Activation of antioxidant response element in mouse primary cortical cultures with sesquiterpene lactones isolated from Tanacetum parthenium

Fischedick, J. T., Standiford, M., Johnson, D. A., de Vos, R. C. H., Todorovic, S., Banjanac, T., Verpoorte, R. & Johnson, J. A., 2012, In : Planta Medica. 78, 16, p. 1725-1730

Research output: Contribution to journalArticleAcademicpeer-review

24 Citations (Scopus)

A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties

Callingacion, M. N., Boualaphanh, C., Daygon, V. D., Anacleto, R., Sackville Hamilton, R., Biais, B., Deborde, C., Maucourt, M., Moing, A., Mumm, R., de Vos, C. H., Erban, A., Kopka, J., Hansen, T. H., Laursen, K. H., Schjoerring, J. K., Hall, R. D. & Fitzgerald, M. A., 2012, In : Metabolomics. 8, 5, p. 771-783

Research output: Contribution to journalArticleAcademicpeer-review

31 Citations (Scopus)

Carotenoid and fatty acid metabolism in nitrogen-starved Dunaliella salina, a unicellular green microalga

Lamers, P. P., Janssen, M., de Vos, R. C. H., Bino, R. J. & Wijffels, R. H., 2012, In : Journal of Biotechnology. 162, 1, p. 21-27

Research output: Contribution to journalArticleAcademicpeer-review

99 Citations (Scopus)

Characterization of the natural variation in Arabidopsis thaliana metabolome by the analysis of metabolic distance

Houshyani Hassanzadeh, B., Kabouw, P., Muth, D., de Vos, R. C. H., Bino, R. J. & Bouwmeester, H. J., 2012, In : Metabolomics. 8, suppl. 1, p. 131-145

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
28 Citations (Scopus)

Genetic analysis of metabolites in apple fruits indicates an mQTL hotspot for phenolic compounds on linkage group 16

Khan, S. A., Chibon, P. Y. F. R. P., de Vos, R. C. H., Schipper, B. A., Walraven, A. E. J., Beekwilder, M. J., van Dijk, T., Finkers, H. J., Visser, R. G. F., van de Weg, W. E., Bovy, A. G., Cestaro, A., Velasco, R., Jacobsen, E. & Schouten, H. J., 2012, In : Journal of Experimental Botany. 63, 8, p. 2895-2908

Research output: Contribution to journalArticleAcademicpeer-review

42 Citations (Scopus)

Gut Microbial Metabolism of Polyphenols from Black Tea and Red Wine/Grape Juice Is Source-Specific and Colon-Region Dependent

van Dorsten, F. A., Peters, S., Gross, G., Gomez-Roldan, V., Klinkenberg, M., de Vos, R., Vaughan, E. E., van Duynhoven, J. P. M., Possemiers, S., van der Wiele, T. & Jacobs, D. M., 2012, In : Journal of Agricultural and Food Chemistry. 60, 45, p. 11331-11342

Research output: Contribution to journalArticleAcademicpeer-review

53 Citations (Scopus)

High-Performance Liquid Chromatography–Mass Spectrometry Analysis of Plant Metabolites in Brassicaceae

de Vos, C. H., Schipper, A. & Hall, R. D., 2012, Plant metabolomics : methods and protocols. Hardy, N. G. & Hall, R. D. (eds.). p. 111-128 (Methods in molecular biology; no. 860).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Citations (Scopus)

Metabolic and transcriptomic changes induced in Arabidopsis by the rhizobacterium Pseudomonas fluorescens SS101

van de Mortel, J. E., de Vos, R. C. H., Dekkers, E., Pineda, A., Guillod, L., Bouwmeester, K., van Loon, J. J. A., Dicke, M. & Raaijmakers, J. M., 2012, In : Plant Physiology. 160, 4, p. 2173-2188

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
115 Citations (Scopus)

Metabolite Identification Using Automated Comparison of High-Resolution Multistage Mass Spectral Trees

Rojas-Cherto, M., Peironcely, J. E., Kasper, P. T., van der Hooft, J. J. J., de Vos, R. C. H., Vreeken, R., Hankemeier, T. & Reijmers, T., 2012, In : Analytical Chemistry. 84, 13, p. 5524-5534

Research output: Contribution to journalArticleAcademicpeer-review

77 Citations (Scopus)

MSClust: a tool for unsupervised mass spectra extraction of chromatography-mass spectrometry ion-wise aligned data

Tikunov, Y. M., Laptenok, S., Hall, R. D., Bovy, A. G. & de Vos, C. H., 2012, In : Metabolomics. 8, 4, p. 714-718

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
92 Citations (Scopus)

Seed storage at elevated partial pressure of oxygen, a fast method for analysing seed ageing under dry conditions

Groot, S. P. C., Surki, A. A., de Vos, R. C. H. & Kodde, J., 2012, In : Annals of Botany. 110, 6, p. 1149-1159

Research output: Contribution to journalArticleAcademicpeer-review

38 Citations (Scopus)

Solid Phase Micro-Extraction GC–MS Analysis of Natural Volatile Components in Melon and Rice

Verhoeven, H. A., Jonker, H. H., de Vos, C. H. & Hall, R. D., 2012, Plant metabolomics. Hardy, N. G. & Hall, R. D. (eds.). London, p. 85-99 (Methods in molecular biology; no. 860).

Research output: Chapter in Book/Report/Conference proceedingChapter

9 Citations (Scopus)

Spectral trees as a robust annotation tool in LC–MS based metabolomics

van der Hooft, J. J. J., Vervoort, J. J. M., Bino, R. J. & de Vos, C. H., 2012, In : Metabolomics. 8, 4, p. 691-703

Research output: Contribution to journalArticleAcademicpeer-review

51 Citations (Scopus)

Structural annotation and elucidation of conjugated phenolic compounds in black, green, and white tea extracts

van der Hooft, J. J. J., Akermi, M., Yelda Ünlü, F., Mihaleva, V., Gomez Roldan, V., Bino, R. J., de Vos, R. C. H. & Vervoort, J. J. M., 2012, In : Journal of Agricultural and Food Chemistry. 60, 36, p. 8841-8850

Research output: Contribution to journalArticleAcademicpeer-review

52 Citations (Scopus)

Structural elucidation and quantification of phenolic conjugates present in human urine after tea intake

van der Hooft, J. J. J., de Vos, R. C. H., Mihaleva, V., Bino, R. J., Ridder, L. O., de Roo, N., Jacobs, D. M., van Duynhoven, J. P. M. & Vervoort, J. J. M., 2012, In : Analytical Chemistry. 84, 16, p. 7263-7271

Research output: Contribution to journalArticleAcademicpeer-review

77 Citations (Scopus)

Substructure-based annotation of high-resolution multistage MSn spectral trees

Ridder, L. O., van der Hooft, J. J. J., Verhoeven, S., de Vos, R. C. H., van Schaik, R. & Vervoort, J., 2012, In : Rapid Communications in Mass Spectrometry. 26, 20, p. 2461-2471

Research output: Contribution to journalArticleAcademicpeer-review

71 Citations (Scopus)

Transportomics: screening for substrates of ABC transporters in body fluids using vesicular transport assays

Krumpochova, P., Sapthu, S., Brouwers, J. F., de Haas, M., de Vos, R. C. H., Borst, P. & van de Wetering, K., 2012, In : FASEB Journal. 26, 2, p. 738-747

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
39 Citations (Scopus)
2013

Automatic Chemical Structure Annotation of an LC-MSn Based Metabolic Profile from Green Tea

Ridder, L. O., van der Hooft, J. J. J., Verhoeven, S., de Vos, C. H., Bino, R. J. & Vervoort, J., 2013, In : Analytical Chemistry. 85, 12, p. 6033-6040

Research output: Contribution to journalArticleAcademicpeer-review

68 Citations (Scopus)

Changes in polyphenol content during production of grape juice concentrate

Capanoglu, E., de Vos, R. C. H., Hall, R. D., Boyacioglu, D. & Beekwilder, M. J., 2013, In : Food Chemistry. 139, 1-4, p. 521-526

Research output: Contribution to journalArticleAcademicpeer-review

32 Citations (Scopus)

Changes in sour cherry (Prunus cerasus L.) antioxidants during nectar processing and in vitro gastrointestinal digestion.

Toydemir, G., Capanoglu, E., Kamiloglu, S., Boyacioglu, D., de Vos, C. H., Hall, R. D. & Beekwilder, M. J., 2013, In : Journal of Functional Foods. 5, 3, p. 1402-1413

Research output: Contribution to journalArticleAcademicpeer-review

41 Citations (Scopus)

Citrus phenylpropanoids and defence against pathogens. Part I: Metabolic profiling in elicited fruits

Ballester, A. R., Lafuente, M. T., de Vos, R. C. H., Bovy, A. G. & González-Candelas, L., 2013, In : Food Chemistry. 136, 1, p. 178-185

Research output: Contribution to journalArticleAcademicpeer-review

43 Citations (Scopus)

Detoxification of a-tomatine by Cladosporium fulvum is required for full virulence on tomato

Ökmen, B., Etalo, D. W., Joosten, M. H. A. J., Bouwmeester, H. J., de Vos, R. C. H., Collemare, J. A. R. & de Wit, P. J. G. M., 2013, In : New Phytologist. 198, 4, p. 1203-1214

Research output: Contribution to journalArticleAcademicpeer-review

48 Citations (Scopus)

Differences in insect resistance between tomato species endemic to the Galapagos Islands

Lucatti, A. F., van Heusden, A. W., de Vos, R. C. H., Visser, R. G. F. & Vosman, B., 2013, In : BMC Evolutionary Biology. 13, 12 p., 175.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
28 Citations (Scopus)

Evaluation of Glucosinolate Variation in a Collection of Turnip (Brassica rapa) Germplasm by the Analysis of Intact and Desulfo Glucosinolates

Lee, G. J., Bonnema, G., Zhang, N., Kwak, J. H., de Vos, R. C. H. & Beekwilder, M. J., 2013, In : Journal of Agricultural and Food Chemistry. 61, 16, p. 3984-3993

Research output: Contribution to journalArticleAcademicpeer-review

32 Citations (Scopus)

Identification and characterization of MYB-bHLH-WD40 regulatory complexes controlling proanthocyanidin biosynthesis in strawberry (Fragaria 9 ananassa) fruits

Schaart, J. G., Dubois, C., Romero de la Fuente, I., van Houwelingen, A. M. M. L., de Vos, R. C. H., Jonker, H. H., Xu, W., Routaboul, J. M., Lepinice, L. & Bovy, A. G., 2013, In : New Phytologist. 197, 2, p. 454-467

Research output: Contribution to journalArticleAcademicpeer-review

185 Citations (Scopus)

Identification and QTL mapping of whitefly resistance components in Solanum galapagense

Firdaus, S., van Heusden, A. W., Hidayati, N., Supena, E. D. J., Mumm, R., de Vos, R. C. H., Visser, R. G. F. & Vosman, B., 2013, In : Theoretical and Applied Genetics. 126, 6, p. 1487-1501

Research output: Contribution to journalArticleAcademicpeer-review

32 Citations (Scopus)

Industrial processing effects on phenolic compounds in sour cherry (Prunus cerasus L.) fruit

Toydemir, G., Capanoglu, E., Gomez-Roldan, M. V., de Vos, R. C. H., Boyacioglu, D., Hall, R. D. & Beekwilder, M. J., 2013, In : Food Research International. 53, 1, p. 218-225

Research output: Contribution to journalArticleAcademicpeer-review

38 Citations (Scopus)

Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment

Bernillon, S., Biais, B., Deborde, C., Maucort, M., Cabasson, C., Gibon, Y., Hansen, T., Husted, S., de Vos, R. C. H., Mumm, R., Jonker, H., Ward, J. L., Miller, S. J., Baker, J. M., Burger, J., Tadmor, Y., Beale, M. H., Schjoerring, J. K., Schaffer, A., Rolin, D. & 2 others, Hall, R. D. & Moing, A., 2013, In : Metabolomics. 9, 1, p. 57-77

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
36 Citations (Scopus)

Metabolomics and molecular marker analysis to explore pepper (Capsicum sp.) biodiversity

Wahyuni, Y., Ballester, A. R., Tikunov, Y. M., de Vos, C. H. R., Pelgrom, K. T. B., Maharijaya, A., Sudarmonowati, E., Bino, R. J. & Bovy, A. G., 2013, In : Metabolomics. 9, 1, p. 130-144

Research output: Contribution to journalArticleAcademicpeer-review

61 Citations (Scopus)

Methane reduction by plant pigments and antioxidants in rumen fluid involves modifications, e.g. hydrogenatioor degradation of the active compoundsn,

Becker, P. M., van Wikselaar, P. G., Ilgenfritz, J., Beekwilder, M. J., de Vos, R. C. H., Franz, C. H. & Zitterl-Eglseer, K., 2013, In : Wiener Tierarztliche Monatsschrift. 100, p. 295-305

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

NON-SMOKY GLYCOSYLTRANSFERASE1 Prevents the Release of Smoky Aroma from Tomato Fruit

Tikunov, Y. M., Molthoff, J. W., de Vos, R. C. H., Beekwilder, M. J., van Houwelingen, A. M. M. L., van der Hooft, J. J. J., Nijenhuis-de Vries, M. A., Labrie, C. W., Verkerke, W., van de Geest, H. C., Víquez Zamora, A. M., Presa, S., Rambla Nebot, J. L., Granell, A., Hall, R. D. & Bovy, A. G., 2013, In : The Plant Cell. 25, 8, p. 3067-3078

Research output: Contribution to journalArticleAcademicpeer-review

46 Citations (Scopus)

Structural elucidation of low abundant metabolites in complex sample matrices

van der Hooft, J. J. J., de Vos, R. C. H., Ridder, L. O., Vervoort, J. & Bino, R. J., 2013, In : Metabolomics. 9, 5, p. 1009-1018

Research output: Contribution to journalArticleAcademicpeer-review

35 Citations (Scopus)

System-Wide Hypersensitive Response-Associated Transcriptome and Metabolome Reprogramming in Tomato

Etalo, D. W., Stulemeijer, I. J. E., van Esse, H. P., de Vos, R. C. H., Bouwmeester, H. J. & Joosten, M. H. A. J., 2013, In : Plant Physiology. 162, 3, p. 1599-1617

Research output: Contribution to journalArticleAcademicpeer-review

27 Citations (Scopus)

The Large Scale Identification and Quantification of Conjugates of Intact and Gut Microbial Bioconversion Products of Polyphenols.

van der Hooft, J. J. J., de Vos, C. H., Bino, R. J., Mihaleva, V. V., Ridder, L. O., de Roo, N., Jacobs, D. M., van Duynhoven, J. P. M. & Vervoort, J., 2013, Magnetic Resonance in Food Science. Duynhoven, J., Belton, P. S., Webb, G. A. & As, H. (eds.). CBSG/NMC, p. 177-182

Research output: Chapter in Book/Report/Conference proceedingChapter

2014
16 Citations (Scopus)

Characterization of two genes for the biosynthesis of abietane-type diterpenes in rosemary (Rosmarinus officinalis) glandular trichomes

Brückner, K., Bozic, D., Manzano, D., Papaefthimiou, D., Pateraki, I., Scheler, U., Ferrer, A., de Vos, R. C. H., Kanellis, A. K. & Tissier, A., 2014, In : Phytochemistry. 101, p. 52-64

Research output: Contribution to journalArticleAcademicpeer-review

48 Citations (Scopus)

Control of anthocyanin and non-flavonoid compounds by anthocyanin-regulating MYB and bHLH transcription factors in Nicotiana benthamiana leaves

Outchkourov, N. S., Carollo, C. A., Gomez Roldan, M. V., de Vos, C. H., Bosch, H. J., Hall, R. D. & Beekwilder, M. J., 2014, In : Frontiers in Plant Science. 5, 9 p., 519.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
19 Citations (Scopus)

Elucidation and in planta reconstitution of the parthenolide biosynthetic pathway

Liu, Q., Manzano, D., Tanic, N., Pesic, M., Bankovic, J., Pateraki, I., Ricard, L., Ferrer, A., de Vos, R. C. H., van der Krol, A. R. & Bouwmeester, H. J., 2014, In : Metabolic Engineering. 23, p. 145-153

Research output: Contribution to journalArticleAcademicpeer-review

33 Citations (Scopus)
20 Citations (Scopus)

Genetic mapping of semi-polar metabolites in pepper fruits (Capsicum sp.): towards unravelling the molecular regulation of flavonoid quantitative trait loci

Wahyuni, Y., Stahl-Hermes, V., Ballester, A. R., de Vos, C. H., Voorrips, R. E., Maharijaya, A., Molthoff, J. W., Víquez Zamora, A. M., Sudarmonowati, E., Arisi, A. C. M., Bino, R. J. & Bovy, A. G., 2014, In : Molecular Breeding. 33, 3, p. 503-518

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
16 Citations (Scopus)