Rens Holmer

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10 Article
1 Conference paper
1 internal PhD, WU
1 Working paper

The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light-use efficiency
Garassino, F., Wijfjes, R. Y., Boesten, R., Reyes Marquez, F., Becker, F. F. M., Clapero, V., van den Hatert, I., Holmer, R., Schranz, E., Harbinson, J., de Ridder, D., Smit, S. & Aarts, M. G. M., Dec 2022, In: Plant Journal. 112, 5, p. 1298-1315
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
8 Citations (Scopus)
Comparative and functional genomics of nitrogen-fixing rhizobium symbiosis in plants
Holmer, R., 14 Jun 2021, Wageningen: Wageningen University. 154 p.
Research output: Thesis › internal PhD, WU

Open Access
The BOP-type co-transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii
Shen, D., Holmer, R., Kulikova, O., Mannapperuma, C., Street, N. R., Yan, Z., van der Maden, T., Bu, F., Zhang, Y., Geurts, R. & Magne, K., Jun 2021, In: Plant Journal. 106, 5, p. 1366-1386
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
3 Citations (Scopus)
The effect of exogenous nitrate on LCO signalling, cytokinin accumulation, and nodule initiation in Medicago truncatula
Gühl, K., Holmer, R., Xiao, T. T., Shen, D., Wardhani, T. A. K., Geurts, R., van Zeijl, A. & Kohlen, W., 28 Jun 2021, In: Genes. 12, 7, 988.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
19 Citations (Scopus)
Eleven grand challenges in single-cell data science
Lähnemann, D., Köster, J., Szczurek, E., McCarthy, D. J., Hicks, S. C., Robinson, M. D., Vallejos, C. A., Campbell, K. R., Beerenwinkel, N., Mahfouz, A., Pinello, L., Skums, P., Stamatakis, A., Attolini, C. S. O., Aparicio, S., Baaijens, J., Balvert, M., de Barbanson, B., Cappuccio, A. & Corleone, G. & 31 others, Dutilh, B. E., Florescu, M., Guryev, V., Holmer, R., Jahn, K., Lobo, T. J., Keizer, E. M., Khatri, I., Kielbasa, S. M., Korbel, J. O., Kozlov, A. M., Kuo, T. H., Lelieveldt, B. P. F., Mandoiu, I. I., Marioni, J. C., Marschall, T., Mölder, F., Niknejad, A., Raczkowski, L., Reinders, M., de Ridder, J., Saliba, A. E., Somarakis, A., Stegle, O., Theis, F. J., Yang, H., Zelikovsky, A., McHardy, A. C., Raphael, B. J., Shah, S. P. & Schönhuth, A., 7 Feb 2020, In: Genome Biology. 21, 1, 31.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
747 Citations (Scopus)

Reverse genetics using CRISPR-Cas9 in the tropical tree Parasponia andersonii revealed a promotive role for PanNODULE ROOT1 in stem secondary growth
Shen, D. (Creator), Holmer, R. (Creator), Kulikova, O. (Creator), Mannapperuma, C. (Creator), Street, N. R. (Creator), Yan, Z. (Creator), van der Maden, T. (Creator), Bu, F. (Creator), Zhang, Y. (Creator), Geurts, R. (Creator) & Magne, K. (Creator), Wageningen University, 3 May 2021
https://www.ebi.ac.uk/ena/browser/view/PRJEB37036
Dataset
Data from: Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses
van Velzen, R. (Creator), Holmer, R. (Creator), Bu, F. (Creator), Rutten, L. J. J. (Creator), van Zeijl, A. L. (Creator), Liu, W. (Creator), Santuari, L. (Creator), Cao, Q. (Creator), Sharma, T. (Creator), Shen, D. (Creator), Roswanjaya, Y. (Creator), Wardhani, T. (Creator), Seifi Kalhor, M. (Creator), Jansen, J. (Creator), van den Hoogen, D. J. (Creator), Gungor, B. (Creator), Hartog, M. V. (Creator), Hontelez, J. (Creator), Verver, J. W. G. (Creator), Yang, W.-C. (Creator), Schijlen, E. G. W. M. (Creator), Repin, R. (Creator), Schilthuizen, M. (Creator), Schranz, M. E. (Creator), Heidstra, R. (Creator), Miyata, K. (Creator), Fedorova, E. (Creator), Kohlen, W. (Creator), Bisseling, A. H. J. (Creator), Smit, S. (Creator) & Geurts, R. (Creator), Wageningen University & Research, 3 May 2018
DOI: 10.5061/dryad.fq7gv88
Dataset
Parasponia andersonii isolate:WU1-14
van Velzen, R. (Creator), Holmer, R. (Creator), Bu, F. (Creator), Rutten, L. (Creator), van Zeijl, A. (Creator), Liu, W. (Creator), Santuari, L. (Creator), Cao, Q. (Creator), Sharma, T. (Creator), Shen, D. (Creator), Purwana Roswanjaya, Y. (Creator), Wardhani, T. (Creator), Seifi Kalhor, M. (Creator), Jansen, J. (Creator), van den Hoogen, J. (Creator), Güngör, B. (Creator), Hartog, M. (Creator), Hontelez, J. (Creator), Verver, J. (Creator), Yang, W.-C. (Creator), Schijlen, E. (Creator), Repin, R. (Creator), Schilthuizen, M. (Creator), Schranz, E. (Creator), Heidstra, R. (Creator), Miyata, K. (Creator), Fedorova, E. (Creator), Kohlen, W. (Creator), Bisseling, T. (Creator), Smit, S. (Creator) & Geurts, R. (Creator), Wageningen University, 2 Feb 2018
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA272473/
Dataset
Trema orientale Genome sequencing and assembly
van Velzen, R. (Creator), Holmer, R. (Creator), Bu, F. (Creator), Rutten, L. (Creator), van Zeijl, A. (Creator), Liu, W. (Creator), Santuari, L. (Creator), Cao, Q. (Creator), Sharma, T. (Creator), Shen, D. (Creator), Purwana Roswanjaya, Y. (Creator), Wardhani, T. (Creator), Seifi Kalhor, M. (Creator), Jansen, J. (Creator), van den Hoogen, J. (Creator), Güngör, B. (Creator), Hartog, M. (Creator), Hontelez, J. (Creator), Verver, J. (Creator), Yang, W.-C. (Creator), Schijlen, E. (Creator), Repin, R. (Creator), Schilthuizen, M. (Creator), Schranz, E. (Creator), Heidstra, R. (Creator), Miyata, K. (Creator), Fedorova, E. (Creator), Kohlen, W. (Creator), Bisseling, T. (Creator), Smit, S. (Creator) & Geurts, R. (Creator), Wageningen University, 2 Feb 2018
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA272482/
Dataset
Hirschfeldia incana isolate:HINC_NIJ6 Genome sequencing and assembly
Garassino, F. (Creator), Wijfjes, R. Y. (Creator), Boesten, R. (Creator), Reyes Marquez, F. (Creator), Becker, F. F. M. (Creator), Clapero, V. (Creator), van den Hatert, I. (Creator), Holmer, R. (Creator), Schranz, E. (Creator), Harbinson, J. (Creator), de Ridder, D. (Creator), Smit, S. (Creator) & Aarts, M. G. M. (Creator), Wageningen University & Research, 21 Nov 2022
https://www.ncbi.nlm.nih.gov/bioproject/612790
Dataset

1 Finished
1 Active

Hormonal regulation of mitotic re-activation of plan cells
Adema, K. (PhD candidate), Willemsen, V. (Promotor), Holmer, R. (Co-promotor) & Kohlen, W. (Co-promotor)
1/10/21 → …
Project: PhD
Comparative bioinformatics to underpin the nitrogen fixing rhizobium symbiosis in the non-legume Parasponia
Holmer, R. (PhD candidate), Bisseling, T. (Promotor), Geurts, R. (Co-promotor) & Smit, S. (Co-promotor)
17/07/14 → 14/06/21
Project: PhD

Rens Holmer, PhD

Fingerprint

Collaborations and top research areas from the last five years

Dive into details

The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light-use efficiency

Comparative and functional genomics of nitrogen-fixing rhizobium symbiosis in plants

The BOP-type co-transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii

The effect of exogenous nitrate on LCO signalling, cytokinin accumulation, and nodule initiation in Medicago truncatula

Eleven grand challenges in single-cell data science

Reverse genetics using CRISPR-Cas9 in the tropical tree Parasponia andersonii revealed a promotive role for PanNODULE ROOT1 in stem secondary growth

Data from: Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

Parasponia andersonii isolate:WU1-14

Trema orientale Genome sequencing and assembly

Hirschfeldia incana isolate:HINC_NIJ6 Genome sequencing and assembly

Hormonal regulation of mitotic re-activation of plan cells

Comparative bioinformatics to underpin the nitrogen fixing rhizobium symbiosis in the non-legume Parasponia

Rens Holmer, PhD

Fingerprint

Collaborations and top research areas from the last five years

Research output

Datasets

Projects