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Research Output 1996 2020

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Article
2020

Breeding top genotypes and accelerating response to recurrent selection by selecting parents with greater gametic variance

Bijma, P., Wientjes, Y. C. J. & Calus, M. P. L., 1 Jan 2020, In : Genetics. 214, 1, p. 91-107 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Human Herpesvirus 4
Breeding
Genotype
Germ Cells
Population

The economic value of R0 for selective breeding against microparasitic diseases

Janssen, K. & Bijma, P., 31 Jan 2020, In : Genetics, selection, evolution : GSE. 52, 1, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
selective breeding
selection methods
economic valuation
genetic improvement
Economics
2019
1 Citation (Scopus)

A genome-wide association study for susceptibility and infectivity of Holstein Friesian dairy cattle to digital dermatitis

Biemans, F., de Jong, M. C. M. & Bijma, P., Jul 2019, In : Journal of Dairy Science. 102, 7, p. 6248-6262

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Digital Dermatitis
Genome-Wide Association Study
dermatitis
dairy cattle
Single Nucleotide Polymorphism

A note on genetic parameters and accuracy of estimated breeding values in honey bees

Brascamp, E. W. & Bijma, P., 27 Nov 2019, In : Genetics Selection Evolution. 51, 1, 71.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Honey
Bees
honey
breeding value
queen insects

Can breeders solve mortality due to feather pecking in laying hens?

Ellen, E. D. & Bijma, P., 1 Sep 2019, In : Poultry Science. 98, 9, p. 3431-3442 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

feather pecking
laying hens
marker-assisted selection
breeding
poultry industry
2 Citations (Scopus)

Estimating the purebred-crossbred genetic correlation of body weight in broiler chickens with pedigree or genomic relationships

Duenk, P., Calus, M. P. L., Wientjes, Y. C. J., Breen, V. P., Henshall, J. M., Hawken, R. & Bijma, P., 19 Feb 2019, In : Genetics Selection Evolution. 51, 1, 447.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Pedigree
purebreds
pedigree
genetic correlation
Chickens
Open Access
Digital Dermatitis
Basic Reproduction Number
infectivity
dermatitis
breeding value

Hygienic behaviour in honeybees: a comparison of two recording methods and estimation of genetic parameters

Facchini, E., Bijma, P., Pagnacco, G., Rizzi, R. & Brascamp, E. W., 25 Apr 2019, In : Apidologie. 50, 2, p. 163-172 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
honey bees
heritability
repeatability
apiaries
methodology

Improving accuracy of direct and maternal genetic effects in genomic evaluations using pooled boar semen: a simulation study

Maiorano, A. M., Assen, A., Bijma, P., Chen, C. Y., Silva, J. A. I. V., Herring, W. O., Tsuruta, S., Misztal, I. & Lourenco, D. A. L., 30 Jul 2019, In : Journal of Animal Science. 97, 8, p. 3237-3245

Research output: Contribution to journalArticleAcademicpeer-review

Semen
boars
semen
Mothers
genomics

Inbreeding depression due to recent and ancient inbreeding in Dutch Holstein-Friesian dairy cattle

Doekes, H. P., Veerkamp, R. F., Bijma, P., de Jong, G., Hiemstra, S. J. & Windig, J. J., 27 Sep 2019, In : Genetics, selection, evolution : GSE. 51, 1, 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
inbreeding depression
Inbreeding
inbreeding
dairy cattle
cattle

Models with indirect genetic effects depending on group sizes: A simulation study assessing the precision of the estimates of the dilution parameter

Heidaritabar, M., Bijma, P., Janss, L., Bortoluzzi, C., Nielsen, H. M., Madsen, P., Ask, B. & Christensen, O. F., 30 May 2019, In : Genetics Selection Evolution. 51, 1, 24.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
group size
Interpersonal Relations
dilution
Confidence Intervals
Phenotype
1 Citation (Scopus)

Validation of genomic predictions for body weight in broilers using crossbred information and considering breed-of-origin of alleles

Duenk, P., Calus, M. P. L., Wientjes, Y. C. J., Breen, V. P., Henshall, J. M., Hawken, R. & Bijma, P., 8 Jul 2019, In : Genetics Selection Evolution. 51, 1, 38.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Breeding
genomics
crossbreds
allele
broiler chickens
2018
3 Citations (Scopus)

Derivation of the economic value of R0 for macroparasitic diseases and application to sea lice in salmon

Janssen, K., Komen, H., Saatkamp, H. W., de Jong, M. C. M. & Bijma, P., 3 Oct 2018, In : Genetics Selection Evolution. 50, 1, 47.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Copepoda
Caligidae
louse
economic valuation
Oceans and Seas
5 Citations (Scopus)

Digital Dermatitis in dairy cattle: The contribution of different disease classes to transmission

Biemans, F., Bijma, P., Boots, N. M. & de Jong, M. C. M., Jun 2018, In : Epidemics. 23, p. 76-84

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Digital Dermatitis
Infection
Foot
Basic Reproduction Number
Hoof and Claw
2 Citations (Scopus)

Indirect Genetic Effects for Growth in Pigs Affect Behaviour and Weight Around Weaning

Camerlink, I., Ursinus, W. W., Bartels, A. C., Bijma, P. & Bolhuis, J. E., Sep 2018, In : Behavior Genetics. 48, 5, p. 413-420

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
weaning
weaning weight
Weaning
pig
Swine

Maternal Effects in a Wild Songbird Are Environmentally Plastic but Only Marginally Alter the Rate of Adaptation

Ramakers, J. J. C., Cobben, M. M. P., Bijma, P., Reed, T. E., Visser, M. E. & Gienapp, P., 26 Mar 2018, In : American Naturalist. 191, 5, p. E000 – E000

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
maternal effect
songbird
songbirds
plastics
plastic
5 Citations (Scopus)

Modelling the co-evolution of indirect genetic effects and inherited variability

Marjanovic, J., Mulder, H. A., Rönnegård, L. & Bijma, P., 28 Mar 2018, In : Heredity. 121, p. 631–647

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Molecular Evolution
Genetic Models
Phenotype
Aquaculture
Agriculture
2 Citations (Scopus)
Open Access
genetic correlation
disequilibrium
Linkage Disequilibrium
Population
linkage disequilibrium
1 Citation (Scopus)

Sensitivity of the breeding values for growth rate and worm egg count to environmental worm burden in Australian Merino sheep

Hollema, B. L., Bijma, P. & van der Werf, J. H. J., Oct 2018, In : Journal of Animal Breeding and Genetics. 135, 5, p. 357-365

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Merino
breeding value
Breeding
Ovum
Sheep

Software Development for Deterministic Prediction of Selection Response in Livestock Breeding Programs Using Genomic Information

Su, H., Bijma, P., van der Werf, J. & Dekkers, J. C. M., Apr 2018, In : Journal of Animal Science. 96, Supplement 2, p. 19-19 35.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
selection response
livestock breeding
Livestock
Breeding
Software
2 Citations (Scopus)

The genetic architecture of socially-affected traits: a GWAS for direct and indirect genetic effects on survival time in laying hens showing cannibalism

Brinker, T., Bijma, P., Vereijken, A. & Ellen, E. D., 23 Jul 2018, In : Genetics Selection Evolution. 50, 1, 38.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cannibalism
Genome-Wide Association Study
cannibalism
laying hens
Single Nucleotide Polymorphism
13 Citations (Scopus)
Open Access
Inbreeding
inbreeding
Breeding
Holstein
genome
6 Citations (Scopus)
Open Access
genetic merit
germplasm conservation
Breeding
Fertility
bulls
2017
6 Citations (Scopus)

A model to estimate effects of SNPs on host susceptibility and infectivity for an endemic infectious disease

Biemans, F., de Jong, M. C. M. & Bijma, P., 2017, In : Genetics, Selection, Evolution. 49, 13 p., 53.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Endemic Diseases
infectivity
infectious disease
single nucleotide polymorphism
infectious diseases
3 Citations (Scopus)

Benefits of dominance over additive models for the estimation of average effects in the presence of dominance

Duenk, P., Calus, M. P. L., Wientjes, Y. C. J. & Bijma, P., 1 Oct 2017, In : G3 : Genes Genomes Genetics. 7, 10, p. 3405-3414

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Frequency
Genotype
Genetic Models
Sample Size
Population
4 Citations (Scopus)

Estimation of total genetic effects for survival time in crossbred laying hens showing cannibalism, using pedigree or genomic information

Brinker, T., Raymond, B., Bijma, P., Vereijken, A. & Ellen, E. D., 2017, In : Journal of Animal Breeding and Genetics. 134, 1, p. 60-68

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cannibalism
cannibalism
Pedigree
pedigree
laying hens
13 Citations (Scopus)
Metagenomics
Population
Dental Scaling
Population Genetics
Gene Frequency
2 Citations (Scopus)

Response to selection in finite locus models with nonadditive effects

Esfandyari, H., Henryon, M., Berg, P., Thomasen, J. R., Bijma, P. & Sørensen, A. C., 2017, In : Journal of Heredity. 108, 3, p. 318-327

Research output: Contribution to journalArticleAcademicpeer-review

Genetic Models
Human Herpesvirus 4
Chromosomes
Patient Selection
Population
10 Citations (Scopus)

The early-life environment of a pig shapes the phenotypes of its social partners in adulthood

Canario, L., Lundeheim, N. & Bijma, P., 2017, In : Heredity. 118, 6, p. 534-541

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Swine
Phenotype
Growth
Sus scrofa
Interpersonal Relations
2016
25 Citations (Scopus)
Open Access
Population
Quantitative Trait Loci
Population Genetics
Chromosomes
Alleles
1 Citation (Scopus)

Comparison of designs for estimating genetic parameters and obtaining response to selection for social interaction traits in aquaculture

Sae-Lim, P. & Bijma, P., 2016, In : Aquaculture. 451, p. 330-339

Research output: Contribution to journalArticleAcademicpeer-review

aquaculture
inbreeding
experimental design
group size
comparison
7 Citations (Scopus)

Direct and indirect genetic effects in life-history traits of flour beetles (Tribolium castaneum)

Ellen, E. D., Peeters, K., Verhoeven, M., Gols, R., Harvey, J. A., Wade, M. J., Dicke, M. & Bijma, P., 2016, In : Evolution. 70, 1, p. 207-217

Research output: Contribution to journalArticleAcademicpeer-review

Tribolium
Tenebrionidae
Tribolium castaneum
Beetles
Flour
5 Citations (Scopus)

Estimation of indirect genetic effects in group-housed mink (Neovison vison) should account for systematic interactions either due to kin or sex

Alemu, S. W., Berg, P., Janss, L. & Bijma, P., 2016, In : Journal of Animal Breeding and Genetics. 133, 1, p. 43-50

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Mink
Neovison vison
group effect
mink
Genetic Models
14 Citations (Scopus)

Genetic and non-genetic indirect effects for harvest weight in the GIFT strain of Nile tilapia (Oreochromis niloticus)

Khaw, H. L., Ponzoni, R. W., Yee, H. Y., Aziz, M. A. & Bijma, P., 2016, In : Aquaculture. 450, p. 154-161

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Oreochromis niloticus
environmental effect
aquaculture production
fish
aquaculture
17 Citations (Scopus)

Genetic parameters for uniformity of harvest weight and body size traits in the GIFT strain of Nile tilapia

Marjanovic, J., Mulder, H. A., Khaw, H. L. & Bijma, P., 2016, In : Genetics, Selection, Evolution. 48, 1, 41.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tilapia (Cichlidae)
Tilapia
Cichlids
Body Size
Oreochromis niloticus
11 Citations (Scopus)

Genetic variance for uniformity of harvest weight in Nile tilapia (Oreochromis niloticus)

Khaw, H. L., Ponzoni, R. W., Yee, H. Y., Aziz, M. A., Mulder, H. A., Marjanovic, J. & Bijma, P., 2016, In : Aquaculture. 451, p. 113-120

Research output: Contribution to journalArticleAcademicpeer-review

Oreochromis niloticus
genetic variance
selective breeding
selection methods
aquaculture
9 Citations (Scopus)

Genomic prediction of crossbred performance based on purebred Landrace and Yorkshire data using a dominance model

Esfandyari, H., Bijma, P., Henryon, M., Christensen, O. F. & Sørensen, A. C., 2016, In : Genetics, Selection, Evolution. 48, 1, 40.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Yorkshire (swine breed)
purebreds
landraces
dominance (genetics)
Breeding
7 Citations (Scopus)

Genomic prediction of survival time in a population of brown laying hens showing cannibalistic behavior

Alemu, S. W., Calus, M. P. L., Muir, W. M., Peeters, K., Vereijken, A. & Bijma, P., 2016, In : Genetics, Selection, Evolution. 48, 1, 68.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
breeding value
laying hens
beak
Breeding
genomics
5 Citations (Scopus)

Heritabilities and genetic correlations for honey yield, gentleness, calmness and swarming behaviour in Austrian honey bees

Brascamp, E., Willam, A., Boigenzahn, C., Bijma, P. & Veerkamp, R. F., 2016, In : Apidologie. 47, 6, p. 739-748

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
swarming
honey
genetic correlation
honey bees
heritability
2015
22 Citations (Scopus)

A crossbred reference population can improve the response to genomic selection for crossbred performance

Esfandyari, H., Sorensen, A. C. & Bijma, P., 2015, In : Genetics, Selection, Evolution. 47, 76.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genetic Hybridization
marker-assisted selection
genomics
crossbreds
Alleles
17 Citations (Scopus)

Comparison of methods to study uniformity of traits: Application to birth weight in pigs

Sell-Kubiak, E. B., Bijma, P., Knol, E. F. & Mulder, H. A., 2015, In : Journal of Animal Science. 93, 3, p. 900-911

Research output: Contribution to journalArticleAcademicpeer-review

Birth Weight
birth weight
Swine
swine
Human Herpesvirus 4
32 Citations (Scopus)

Empirical and deterministic accuracies of across-population genomic prediction

Wientjes, Y. C. J., Veerkamp, R. F., Bijma, P., Bovenhuis, H., Schrooten, C. & Calus, M. P. L., 2015, In : Genetics, Selection, Evolution. 47, 5.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Metagenomics
Quantitative Trait Loci
genomics
prediction
Alleles
12 Citations (Scopus)

Evaluation of genomic selection for replacement strategies using selection index theory

Calus, M. P. L., Bijma, P. & Veerkamp, R. F., 2015, In : Journal of Dairy Science. 98, 9, p. 6499-6509

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
selection index
Semen
marker-assisted selection
heifers
Breeding
9 Citations (Scopus)

Genetic analysis of infectious diseases: Estimating gene effects for susceptibility and infectivity

Anche, M. T., Bijma, P. & de Jong, M. C. M., 2015, In : Genetics, Selection, Evolution. 47, 15 p., 85.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
infectivity
genetic analysis
infectious disease
infectious diseases
Communicable Diseases
27 Citations (Scopus)

Genome-wide association study reveals novel loci for litter size and its variability in a Large White pig population

Sell-Kubiak, E., Duijvesteijn, N., Lopes, M. S., Janss, L. L. G., Knol, E. F., Bijma, P. & Mulder, H. A., 2015, In : BMC Genomics. 16, 1, 1049.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Litter Size
Genome-Wide Association Study
Single Nucleotide Polymorphism
Swine
Population
30 Citations (Scopus)

Indirect Genetic Effects for Growth Rate in Domestic Pigs Alter Aggressive and Manipulative Biting Behaviour

Camerlink, I., Ursinus, W. W., Bijma, P., Kemp, B. & Bolhuis, J. E., 2015, In : Behavior Genetics. 45, 1, p. 117-126

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sus scrofa
pig
Swine
swine
Growth
13 Citations (Scopus)

Maximizing crossbred performance through purebred genomic selection

Esfandyari, H., Sorensen, A. C. & Bijma, P., 2015, In : Genetics, Selection, Evolution. 47, 16.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
purebreds
marker-assisted selection
disequilibrium
Linkage Disequilibrium
genomics
3 Citations (Scopus)

Predicting direct and indirect breeding values for survival time in laying hens using repeated measures

Brinker, T., Ellen, E. D., Veerkamp, R. F. & Bijma, P., 2015, In : Genetics, Selection, Evolution. 47, 10 p., 75.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
breeding value
laying hens
Breeding
breeding
Cannibalism
2 Citations (Scopus)

Predicting heterosis for egg production traits in crossbred offspring of individual White Leghorn sires using genome-wide SNP data

Amuzu, E., Bovenhuis, H., De Koning, D. J. & Bijma, P., 2015, In : Genetics, Selection, Evolution. 47, 8 p., 27.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Hybrid Vigor
heterosis
egg production
White Leghorn
single nucleotide polymorphism
23 Citations (Scopus)

Reliability of pedigree-based and genomic evaluations in selected populations

Gorjanc, G., Bijma, P. & Hickey, J. M., 2015, In : Genetics, Selection, Evolution. 47, 65.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Pedigree
breeding value
pedigree
Breeding
genomics