Peter Schaap

Search results

• Expected and observed genotype complexity in prokaryotes: correlation between 16S-rRNA phylogeny and protein domain content

  Koehorst, J. (Creator), Schaap, P. (Contributor) & Suarez-Diez, M. (Contributor), Wageningen University & Research, 24 Oct 2018

  DOI: 10.4121/uuid:37346f1e-f8cf-4112-ba4b-1223a3e4edda

  Dataset

• Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

  Koehorst, J. (Creator), van Dam, J. C. J. (Contributor), van Heck, R. G. A. (Contributor), Saccenti, E. (Contributor), Martins dos Santos, V. (Contributor), Suarez-Diez, M. (Contributor) & Schaap, P. (Contributor), Wageningen University & Research, 25 Sept 2018

  DOI: 10.4121/uuid:948c10fe-7ea5-47f3-bdb2-d5b0f908820b

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12708

  Dataset

• Aspergillus niger N402 derivatives grown with different amounts of iron in the medium

  Odoni, D. I. (Creator), van Gaal, M. (Creator), Schonewille, T. (Creator), Tamayo Ramos, J. A. (Creator), Martins dos Santos, V. (Creator), Suarez-Diez, M. (Creator) & Schaap, P. (Creator), Wageningen University, 19 Jun 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB20746

  Dataset

• Aspergillus niger N402 derivatives grown with different supplements

  Odoni, D. I. (Creator), Vazquez Vilar, M. (Creator), van Gaal, M. (Creator), Schonewille, T. (Creator), Martins dos Santos, V. (Creator), Tamayo-Ramos, J. A. (Creator), Suarez-Diez, M. (Creator) & Schaap, P. (Creator), Wageningen University, 29 Jun 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB24704

  Dataset

• Microbe enriched dual RNA sequencing of Mycobacterium bovis BCG infecting macrophage-like THP-1 cells

  Rienksma, R. A. (Creator), Suarez-Diez, M. (Creator), Mollenkopf, H. J. (Creator), Dolganov, G. M. (Creator), Dorhoi, A. (Creator), Schoolnik, G. K. (Creator), Martins dos Santos, V. (Creator), Kaufmann, S. (Creator), Schaap, P. (Creator) & Gengenbacher, M. (Creator), Wageningen University, 17 Jun 2014

  http://www.ebi.ac.uk/ena/data/view/PRJEB6552

  Dataset

• Scenedesmus Obliquus UTEX393 draft genome

  Carreres, B. M. (Creator), de Jaeger, L. (Creator), Springer, J. (Creator), Barbosa, M. (Creator), Breuer, G. (Creator), van den End, F. (Creator), Kleinegris, D. M. M. (Creator), Schäffers, I. (Creator), Wolbert, E. (Creator), Zhang, H. (Creator), Lamers, P. P. (Creator), Martins dos Santos, V. (Creator), Wijffels, R. (Creator), Eggink, G. (Creator), Schaap, P. (Creator) & Martens, D. (Creator), Wageningen University, 1 Nov 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB15865

  Dataset

• Akkermansia transcriptome response to mucin and/or glucose growth medium

  Ottman, N. A. (Creator), Davids, M. (Creator), Suarez-Diez, M. (Creator), Boeren, S. (Creator), Schaap, P. (Creator), Martins dos Santos, V. (Creator), Smidt, H. (Creator), Belzer, C. (Creator) & de Vos, W. (Creator), Wageningen University, 9 May 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB9527

  Dataset

• Complete genome sequence of the Akkermansia glycaniphila strain PytT a mucin-degrading specialist of the reticulated python gut

  Ouwerkerk, J. P. (Creator), Koehorst, J. (Creator), Schaap, P. (Creator), Ritari, J. (Creator), Paulin, L. (Creator), Belzer, C. (Creator) & de Vos, W. (Creator), Wageningen University, 2 Sept 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB15121

  Dataset

• ANEO-GEM: The consensus genome-scale metabolic model of Anaerotignum neopropionicum

  Benito-Vaquerizo, S. (Creator), Parera Olm, I. (Creator), de Vroet, T. (Creator), Schaap, P. (Creator), Machado de Sousa, D. (Creator), Martins dos Santos, V. (Creator) & Suarez-Diez, M. (Creator), Wageningen University & Research, 2022

  https://gitlab.com/wurssb/Modelling/Anaerotignum_neopropionicum

  Dataset

• Effects of Argonaute on gene expression in Thermus thermophilus

  Swarts, D. (Creator), Koehorst, J. (Creator), Westra, E. R. (Creator), Schaap, P. (Creator) & van der Oost, J. (Creator), Wageningen University, 23 Apr 2015

  https://www.ebi.ac.uk/ena/data/view/PRJEB8709

  Dataset

• Comparative genomics, symbiotic capacities and high metabolic flexibility of the marine genus Pseudovibrio

  Versluis, D. (Creator), Nijsse, B. (Creator), Mohamad, M. A. N. (Creator), Koehorst, J. (Creator), Wiese, J. (Creator), Imhoff, J. F. (Creator), Schaap, P. (Creator), van Passel, M. W. J. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University, 28 Jun 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB20602

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12706

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 20 May 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB13128

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12709

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12704

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12705

  Dataset

• RNA sequencing of Cutaneotrichosporon curvatum ATCC 20509 in two conditions. C/N of 2.8 and 28

  Pham, N. (Creator), Reijnders, M. (Creator), Suarez-Diez, M. (Creator), Nijsse, B. (Creator), Springer, J. (Creator), Eggink, G. (Creator) & Schaap, P. (Creator), Wageningen University, 14 Apr 2020

  https://www.ebi.ac.uk/ena/browser/view/PRJEB34237

  Dataset

• Rhizopus delemar grown under high and low oxygen conditions

  Odoni, D. I. (Creator), Tamayo Ramos, J. A. (Creator), Sloothaak, J. (Creator), van Heck, R. G. A. (Creator), Martins dos Santos, V. (Creator), de Graaff, L. H. (Creator), Suarez-Diez, M. (Creator) & Schaap, P. (Creator), Wageningen University, 16 Feb 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB14210

  Dataset

• NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes

  Ramiro Garcia, J. (Creator), Hermes, G. D. A. (Creator), Giatsis, C. (Creator), Sipkema, D. (Creator), Zoetendal, E. (Creator), Schaap, P. (Creator) & Smidt, H. (Creator), Wageningen University, 11 Nov 2015

  https://www.ebi.ac.uk/ena/data/view/PRJEB11702

  Dataset

• Conserved symbiosis between Akkermansia muciniphila and its mammalian host

  Geerlings, S. (Creator), Ouwerkerk, J. (Creator), Koehorst, J. (Creator), Ritari, J. (Creator), Aalvink, S. (Creator), Stecher, B. (Creator), Schaap, P. (Creator), Paulin, L. (Creator), de Vos, W. (Creator) & Belzer, C. (Creator), Wageningen University, 28 Jul 2017

  https://www.ebi.ac.uk/ena/browser/view/PRJEB21068

  Dataset

• Mechanistic study on trophic interaction between mucosal keystone species and butyrogenic gut commensals

  Chia, L. W. (Creator), Hornung, B. V. H. (Creator), Aalvink, S. (Creator), Schaap, P. (Creator), de Vos, W. (Creator), Knol, J. (Creator) & Belzer, C. (Creator), Wageningen University, 17 Mar 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB20031

  Dataset

• RNA-targeting by the Type III-A CRISPR-Cas complex of Thermus thermophilus

  Staals, R. (Creator), Zhu, Y. (Creator), Taylor, D. W. (Creator), Kornfeld, J. E. (Creator), Sharma, K. (Creator), Barendregt, A. (Creator), Koehorst, J. (Creator), Vlot, M. (Creator), Neupane, N. (Creator), Varossieau, K. (Creator), Sakamoto, K. (Creator), Suzuki, T. (Creator), Schaap, P. (Creator), Urlaub, H. (Creator), Heck, A. J. R. (Creator), Nogales, E. (Creator), Doudna, J. A. (Creator), Shinkai, A. (Creator) & van der Oost, J. (Creator), Wageningen University, 9 Oct 2014

  http://www.ebi.ac.uk/ena/data/view/PRJEB7461

  Dataset

• Monascus ruber as cell factory for lactic acid production at low pH

  Weusthuis, R. (Creator), Mars, A. (Creator), Springer, J. (Creator), Wolbert, E. (Creator), van der Wal, H. (Creator), de Vrije, T. (Creator), Levisson, M. (Creator), Leprince, A. (Creator), Houweling-Tan, G. B. N. (Creator), Moers, A. P. H. A. (Creator), Hendriks, S. N. A. (Creator), Mendes, O. (Creator), Griekspoor, Y. (Creator), Werten, M. (Creator), Schaap, P. (Creator), van der Oost, J. (Creator) & Eggink, G. (Creator), Wageningen University, 29 Jun 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB20852

  Dataset

• Classification of the plant-associated phenotype of Pseudomonas strains using genome properties

  Poncheewin, W. (Creator), van Diepeningen, A. (Creator), van der Lee, T. (Creator), Suarez-Diez, M. (Creator) & Schaap, P. (Creator), Wageningen University & Research, 20 Jul 2021

  https://www.ncbi.nlm.nih.gov/bioproject/PRJEB45033

  Dataset