Peter Schaap

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Research Output

115 Article
5 Chapter
5 Abstract
3 Conference paper
5 More

Designing Eukaryotic Gene Expression Regulation Using Machine Learning

de Jongh, R. P. H., van Dijk, A. D. J., Julsing, M. K., Schaap, P. J. & de Ridder, D., Feb 2020, In : Trends in Biotechnology. 38, 2, p. 191-201

Research output: Contribution to journal › Article › Academic › peer-review

1 Citation (Scopus)

Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species

Strepis, N., Naranjo, H. D., Meier-Kolthoff, J., Göker, M., Shapiro, N., Kyrpides, N., Klenk, H. P., Schaap, P. J., Stams, A. J. M. & Sousa, D. Z., 8 Jan 2020, In : BMC Genomics. 21, 1, 24.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

MEMOTE for standardized genome-scale metabolic model testing

Lieven, C., Beber, M. E., Olivier, B. G., Bergmann, F. T., Ataman, M., Babaei, P., Bartell, J. A., Blank, L. M., Chauhan, S., Correia, K., Diener, C., Dräger, A., Ebert, B. E., Edirisinghe, J. N., Faria, J. P., Feist, A. M., Fengos, G., Fleming, R. M. T., García-Jiménez, B., Hatzimanikatis, V. & 49 others, van Helvoirt, W., Henry, C. S., Hermjakob, H., Herrgård, M. J., Kaafarani, A., Kim, H. U., King, Z., Klamt, S., Klipp, E., Koehorst, J. J., König, M., Lakshmanan, M., Lee, D. Y., Lee, S. Y., Lee, S., Lewis, N. E., Liu, F., Ma, H., Machado, D., Mahadevan, R., Maia, P., Mardinoglu, A., Medlock, G. L., Monk, J. M., Nielsen, J., Nielsen, L. K., Nogales, J., Nookaew, I., Palsson, B. O., Papin, J. A., Patil, K. R., Poolman, M., Price, N. D., Resendis-Antonio, O., Richelle, A., Rocha, I., Sánchez, B. J., Schaap, P. J., Malik Sheriff, R. S., Shoaie, S., Sonnenschein, N., Teusink, B., Vilaça, P., Vik, J. O., Wodke, J. A. H., Xavier, J. C., Yuan, Q., Zakhartsev, M. & Zhang, C., 1 Mar 2020, In : Nature Biotechnology. 38, 3, p. 272-276 5 p.

Research output: Contribution to journal › Comment/Letter to the editor › Academic

Open Access

1 Citation (Scopus)

Time-dependent transcriptome profile of genes involved in triacylglycerol (TAG) and polyunsaturated fatty acid synthesis in Nannochloropsis gaditana during nitrogen starvation

Janssen, J. H., Spoelder, J., Koehorst, J. J., Schaap, P. J., Wijffels, R. H. & Barbosa, M. J., Apr 2020, In : Journal of Applied Phycology. 32, p. 1153-1164

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Toxicological response of the model fungus Saccharomyces cerevisiae to different concentrations of commercial graphene nanoplatelets

Suarez-Diez, M., Porras, S., Laguna-Teno, F., Schaap, P. J. & Tamayo-Ramos, J. A., 24 Feb 2020, In : Scientific Reports. 10, 1, 3232.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Datasets

Expected and observed genotype complexity in prokaryotes: correlation between 16S-rRNA phylogeny and protein domain content

Koehorst, J. (Creator), Wageningen University & Research, 24 Oct 2018

DOI: 10.4121/uuid:37346f1e-f8cf-4112-ba4b-1223a3e4edda

Dataset

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

Koehorst, J. (Creator), Wageningen University & Research, 25 Sep 2018

DOI: 10.4121/uuid:948c10fe-7ea5-47f3-bdb2-d5b0f908820b

Dataset

RNA-targeting by the Type III-A CRISPR-Cas complex of Thermus thermophilus

Staals, R. (Creator), Zhu, Y. (Creator), Taylor, D. W. (Creator), Kornfeld, J. E. (Creator), Sharma, K. (Creator), Barendregt, A. (Creator), Koehorst, J. (Creator), Vlot, M. (Creator), Neupane, N. (Creator), Varossieau, K. (Creator), Sakamoto, K. (Creator), Suzuki, T. (Creator), Schaap, P. (Creator), Urlaub, H. (Creator), Heck, A. J. R. (Creator), Nogales, E. (Creator), Doudna, J. A. (Creator), Shinkai, A. (Creator), van der Oost, J. (Creator), Wageningen University, 9 Oct 2014

http://www.ebi.ac.uk/ena/data/view/PRJEB7461

Dataset

Comparative genomic and physiological analysis of Trichococcus species

Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, F. (Creator), Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016

https://www.ebi.ac.uk/ena/data/view/PRJEB12707

Dataset

Comparative genomic and physiological analysis of Trichococcus species

Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, F. (Creator), Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016

https://www.ebi.ac.uk/ena/data/view/PRJEB12709

Dataset