Research output per year
Research output per year
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Dive into the research topics where Ole Madsen is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Guiding eQTL mapping and genomic prediction of gene expression in three pig breeds with tissue-specific epigenetic annotations from early development
Mollandin, F., Acloque, H., Ballester, M., Bink, M., Calus, M., Crespo-Piazuelo, D., Croiseau, P., Djebali, S., Foissac, S., Gilbert, H., Giuffra, E., Guyomar, C., Madsen, O., Mercat, M. J., da Costa Perez, B., de Vos, J. & Rau, A., Jan 2026, In: Genomics. 118, 1, 111158.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
A multi-tissue single-cell expression atlas in cattle
Han, B., Li, H., Zheng, W., Zhang, Q., Chen, A., Zhu, S., Shi, T., Wang, F., Zou, D., Song, Y., Ye, W., Du, A., Fu, Y., Jia, M., Bai, Z., Yuan, Z., Liu, W., Tuo, W., Hope, J. C. & MacHugh, D. E. & 18 others, , 2025, In: Nature Genetics. 57, 10, p. 2546-2561 45 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access1 Citation (Scopus) -
Archaeogenomic insights into commensalism and regional variation in pig management in Neolithic northwest Europe
Erven, J. A. M., Mattiangeli, V., Dreshaj, M., Mullin, V. E., Rossi, C., Daly, K. G., Jackson, I., Pearson, M. P., Bradley, D. G., Frantz, L. A. F., Madsen, O., Raemaekers, D. & Çakirlar, C., 17 Mar 2025, In: Proceedings of the National Academy of Sciences of the United States of America. 122, 12, e2410235122.Research output: Contribution to journal › Article › Academic › peer-review
Open Access2 Citations (Scopus) -
Characterization of DNA methylation patterns and genomic regulation of DNA methylation of skeletal muscle in three commercial pig breeds
Luigi-Sierra, M., Gòdia, M., Madsen, O., Karlskov-Mortensen, P. & Pitel, F., 25 Aug 2025, Book of Abstracts of the 76th Annual Meeting of the European Federation of Animal Science. Rome: EAAP, p. 624-624 (Book of Abstracts; no. 39).Research output: Chapter in Book/Report/Conference proceeding › Abstract
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Comprehensive expression genome-wide association study of long non-coding RNAs in four porcine tissues
Deng, L., Gòdia, M., Derks, M. F. L., Harlizius, B., Farhangi, S., Tang, Z., Groenen, M. A. M. & Madsen, O., May 2025, In: Genomics. 117, 3, 10 p., 111026.Research output: Contribution to journal › Article › Academic › peer-review
Open Access
Datasets
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Data from: Untangling the hybrid nature of modern pig genomes: a mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations
Bosse, M. (Creator), Megens, H. J. W. C. (Creator), Madsen, O. (Creator), Frantz, L. A. F. (Creator), Paudel, Y. (Creator), Crooijmans, R. P. M. A. (Creator) & Groenen, M. (Creator), Wageningen UR, 3 Jun 2014
DOI: 10.5061/dryad.33982
Dataset
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Expression genome-wide association study identifies key regulatory variants enriched with metabolic and immune functions in four porcine tissues
Farhangi, S. (Creator), Gòdia, M. (Creator), Derks, M. F. L. (Creator), Harlizius, B. (Creator), Dibbits, B. (Creator), González-Prendes, R. (Creator), Crooijmans, R. P. M. A. (Creator), Madsen, O. (Creator) & Groenen, M. A. M. (Creator), Wageningen University & Research, 18 Aug 2024
DOI: 10.6084/m9.figshare.c.7345492
Dataset
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Vertebrate time-tree elucidates the biogeographic pattern of a major biotic change around the K–T boundary in Madagascar
Crottini, A. (Creator), Madsen, O. (Creator), Poux, C. (Creator), Strauß, A. (Creator), Vieites, D. R. (Creator) & Vences, M. (Creator), Wageningen UR, 2012
Dataset
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Data from: Artificial selection on introduced Asian haplotypes shaped the genetic architecture in European commercial pigs
Bosse, M. (Creator), Soares Lopes, M. (Creator), Madsen, O. (Creator), Megens, H.-J. (Creator), Crooijmans, R. (Creator), Frantz, L. (Creator), Harlizius, B. (Creator), Bastiaansen, J. (Creator) & Groenen, M. (Creator), Wageningen University & Research, 2 Dec 2015
DOI: 10.5061/dryad.g40f0
Dataset
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Data from: Testing models of speciation from genome sequences: divergence and asymmetric admixture in Island Southeast Asian Sus species during the Plio-Pleistocene climatic fluctuations
Frantz, L. A. F. (Creator), Madsen, O. (Creator), Megens, H. J. W. C. (Creator), Groenen, M. (Creator) & Lohse, H. (Creator), Wageningen UR, 9 Oct 2014
DOI: 10.5061/dryad.1q0h6
Dataset
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A large-scale GWAS for additive and dominance effects on boar semen traits
da Costa Sa, P. (Speaker), Godinho, R. M. (Contributor), Godia Perello, M. (Contributor), Sevillano, C. A. (Contributor), Harlizius, B. (Contributor), Madsen, O. (Contributor) & Bovenhuis, H. (Contributor)
10 Jan 2025 → 15 Jan 2025Activity: Talk/presentation/lecture › Oral presentation › Academic
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Variability of colonic and ileal adult intestinal stem cell derived organoids in pigs
Rikkers, R. (Speaker), te Pas, M. (Contributor), Madsen, O. (Contributor), Kar, S. (Contributor), Schokker, D. (Contributor), de Wit, A. (Contributor), Verschuren, L. (Contributor), Verstringe, S. (Speaker) & Ellen, E. (Contributor)
Sept 2022Activity: Talk/presentation/lecture › Oral presentation › Academic
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Resilience through knowledge: Molecular characterization of Pig IPECJ-2 and Chicken CRL cell lines
de Vos, J. (Speaker), Crooijmans, R. (Speaker), Derks, M. (Speaker), Kloet, S. L. (Speaker), Groenen, M. A. M. (Speaker) & Madsen, O. (Speaker)
27 Apr 2021Activity: Talk/presentation/lecture › Oral presentation › Professional
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Pig Genome Evolution: De Novo Assembly and Annotation of the Genome of the Visayan Warty Pig (Sus cebifrons)
Liu, L. (Contributor), Madsen, O. (Contributor), Huang, Q. (Contributor), Derks, M. (Contributor), Megens, H.-J. (Contributor), Crooijmans, R. (Contributor) & Groenen, M. (Speaker)
11 Jan 2020 → 15 Jan 2020Activity: Talk/presentation/lecture › Lecture/seminar/webinar › Other
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Longitudinal RNA-seq Analysis of Tissue Development Reveals the Hub genes that Influencing the Chicken Intramuscular Fat and Abdominal Fat Deposition
Xing, S. (Speaker), Liu, R. (Contributor), Crooijmans, R. (Contributor), Liu, L. (Contributor), Madsen, O. (Contributor), Zhou, W. (Contributor), Cui, H. (Contributor), Li, Q. (Contributor), Zheng, M. (Contributor), Zhao, G. (Contributor), Groenen, M. (Contributor) & Wen, J. (Contributor)
24 Jun 2019Activity: Talk/presentation/lecture › Oral presentation › Other
Press/Media
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Sustainable and responsible animal food production: Single-cell technology increases animal welfare
Groenen, M. A. M. & Madsen, O.
1/06/23 → 2/06/23
2 Media contributions
Press/Media: Research › Professional
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Found In Translation: Genomics of behavioral traits in pigs and chicken
Noordermeer, I. (PhD candidate), Madsen, O. (Promotor), Derks, M. (Co-promotor), Duenk, P. (Co-promotor) & Bijma, P. (Other)
15/09/25 → …
Project: PhD
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Found In Translation: quantitative genetics of behavioral traits in pigs and chicken
Vaccari, G. (PhD candidate), Bijma, P. (Promotor), Derks, M. (Co-promotor), Duenk, P. (Co-promotor) & Madsen, O. (Other)
1/09/25 → …
Project: PhD
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Tools For a More Ethical and Sustainable Egg Industry
Fotowatikha Someeserai, H. (PhD candidate), Crooijmans, R. (Promotor) & Madsen, O. (Co-promotor)
15/04/25 → …
Project: PhD
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Comparative Epigenomic Annotation of Regulatory Elements in Multiple Tissues Across 8 Vertebrate Species
Zhuang, Z. (PhD candidate), Crooijmans, R. (Promotor) & Madsen, O. (Co-promotor)
1/09/24 → …
Project: PhD
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On the epigenetic basis of semen traits
da Costa Sa, P. (PhD candidate), Bovenhuis, H. (Promotor), Godia Perello, M. (Co-promotor) & Madsen, O. (Co-promotor)
15/10/21 → …
Project: PhD