Research output per year
Research output per year
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Dive into the research topics where Ole Madsen is active. These topic labels come from the works of this person. Together they form a unique fingerprint. If staff members have published prior to their WUR affiliation, it is possible that the publication overview, Fingerprint and network diagram are incomplete.
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Genetic consequences of long-term small effective population size in the critically endangered pygmy hog
Liu, L., Bosse, M., Megens, H. J., de Visser, M., Groenen, M. A. M. & Madsen, O., 2021, In: Evolutionary Applications. 14, 3, p. 710-720Research output: Contribution to journal › Article › Academic › peer-review
Open Access6 Citations (Scopus) -
Low variability in gene expression of intestinal organoids and original tissue in pigs
Schokker, D., Woelders, H., Rikkers, R. S. C., Kar, S. K., Madsen, O., Taverne-Thiele, J. J., Taverne, N., Wells, J. M. & Ellen, E. D., 30 Aug 2021, Book of Abstracts of the 72nd Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 185-185 (EAAP Book of Abstracts; vol. 27).Research output: Chapter in Book/Report/Conference proceeding › Abstract
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Organoids: a promising new in vitro platform in livestock and veterinary research
Kar, S. K., Wells, J. M., Ellen, E. D., te Pas, M. F. W., Madsen, O., Groenen, M. A. M. & Woelders, H., 10 Mar 2021, In: Veterinary Research. 52, 1, 43.Research output: Contribution to journal › Article › Academic › peer-review
Open Access6 Citations (Scopus) -
Predicting enhancer-promoter interactions from functional genomics data using machine learning
Duenk, P., Kamphuis, C. & Madsen, O., 1 Jul 2021.Research output: Working paper › Professional
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Resilience through knowledge: Molecular characterization of Pig IPECJ-2 and Chicken CRL cell lines
de Vos, J., Crooijmans, R. P. M. A., Derks, M. F. L., Kloet, S. L., Groenen, M. & Madsen, O., 27 Apr 2021, WIAS Annual Conference 2021: 28 – 29 April 2021 Online COVID-friendly edition: Resilience. Ernst, T., Cui, H., Scaillierez, A. & Minussi, I. (eds.). Wageningen University & Research, p. 26-26Research output: Chapter in Book/Report/Conference proceeding › Abstract
Open Access
Datasets
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Reduced Representation Bisulfite Sequencing of hearts of Cobb Broiler chicks collected at 6hr post-hatch and incubated at different egg shell temperatures and CO2 concentrations
Corbett, R. (Creator), te Pas, M. (Creator), van den Brand, H. (Creator), Groenen, M. A. M. (Creator), Crooijmans, R. (Creator), Ernst, C. W. (Creator) & Madsen, O. (Creator), Wageningen University & Research, 25 Sep 2020
https://www.ebi.ac.uk/ena/browser/view/PRJEB39999
Dataset
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Transcriptome profiling of porcine jejunum tissue, its derived organoids over long-term culture, and transformed cell line IPECJ2 as reference model
van der Hee, B. (Creator), Crooijmans, R. (Creator), Taverne, N. (Creator), Choudhury, R. (Creator), Loonen-Jaklofsky, L. (Creator), Madsen, O. (Creator), Smidt, H. (Creator) & Wells, J. (Creator), Wageningen University, 13 Mar 2020
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE146408
Dataset
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Data from: Testing models of speciation from genome sequences: divergence and asymmetric admixture in Island Southeast Asian Sus species during the Plio-Pleistocene climatic fluctuations
Frantz, L. A. F. (Creator), Madsen, O. (Creator), Megens, H. (Creator), Groenen, M. A. M. (Creator) & Lohse, H. (Creator), Wageningen UR, 9 Oct 2014
DOI: 10.5061/dryad.1q0h6
Dataset
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Analyses of Eurasian wild and domestic pig genomes reveal long-term gene flow and selection during domestication
Frantz, L. A. F. (Creator), Schraiber, J. G. (Creator), Madsen, O. (Creator), Megens, H. (Creator), Cagan, A. (Creator), Bosse, M. (Creator), Paudel, Y. (Creator), Crooijmans, R. (Creator), Larson, G. (Creator) & Groenen, M. A. M. (Creator), Wageningen University, 27 Aug 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB9922
Dataset
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Additional pygmy hog
Liu, L. (Creator), Bosse, M. (Creator), Megens, H. (Creator), de Visser, M. (Creator), Groenen, M. A. M. (Creator) & Madsen, O. (Creator), Wageningen UR, 31 Oct 2019
https://www.ebi.ac.uk/ena/browser/view/PRJEB35180
Dataset
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Resilience through knowledge: Molecular characterization of Pig IPECJ-2 and Chicken CRL cell lines
J. de Vos (Speaker), Richard Crooijmans (Speaker), Martijn Derks (Speaker), Susan L. Kloet (Speaker), M.A.M. Groenen (Speaker) & Ole Madsen (Speaker)
27 Apr 2021Activity: Talk or presentation › Oral presentation › Professional
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Pig Genome Evolution: De Novo Assembly and Annotation of the Genome of the Visayan Warty Pig (Sus cebifrons)
Langqing Liu (Contributor), Ole Madsen (Contributor), Q. Huang (Contributor), Martijn Derks (Contributor), Hendrik-Jan Megens (Contributor), Richard Crooijmans (Contributor) & Martien Groenen (Speaker)
11 Jan 2020 → 15 Jan 2020Activity: Talk or presentation › Public lecture/debate/seminar › Other
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Longitudinal RNA-seq Analysis of Tissue Development Reveals the Hub genes that Influencing the Chicken Intramuscular Fat and Abdominal Fat Deposition
Siyuan Xing (Speaker), Ranran Liu (Contributor), Richard Crooijmans (Contributor), Lu Liu (Contributor), Ole Madsen (Contributor), Wu Zhou (Contributor), Huanxian Cui (Contributor), Qinghe Li (Contributor), Maiqing Zheng (Contributor), Guiping Zhao (Contributor), Martien Groenen (Contributor) & Jie Wen (Contributor)
24 Jun 2019Activity: Talk or presentation › Oral presentation › Other
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Broadening the miRNA Catalogue in Livestock Species
A.J. Amaral (Speaker), Sylvain Marthey (Contributor), A. Hoffmann (Contributor), Jacques Lagnel (Contributor), Fiete Haack (Contributor), Kisun Pokharel (Contributor), O. Palasca (Contributor), P.F. Stadler (Contributor), C. Anthon (Contributor), S.E. Seemann (Contributor), Anoop Arya (Contributor), Luis Gama (Contributor), Martien Groenen (Contributor), Juha Kantanen (Contributor), Richard Crooijmans (Contributor), Elisabetta Giuffra (Contributor), Ole Madsen (Contributor) & J. Gorodkin (Contributor)
14 Jan 2018Activity: Talk or presentation › Oral presentation › Other
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Expression of identical genetic mutations across Oncopig cell types results in distinct expression profiles recapitulating transcriptional hallmarks of human tumors
K.M. Schachtschneider (Speaker), O. Madsen (Contributor) & M. Groenen (Contributor)
18 Jul 2017Activity: Talk or presentation › Oral presentation › Other
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Genetics and Epigenetics in efficient livestock production
da Costa Sa, P., Bovenhuis, H. & Madsen, O.
1/11/21 → …
Project: PhD
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Probe the heterogeneous response of host cell to African swine fever virus infection via single cell RNA-seq
Yao, W., Groenen, M. A. M. & Madsen, O.
1/01/21 → …
Project: PhD
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A Progressive Collaborative Filtering Recommendation Algorithm
Huang, Q., Groenen, M. A. M. & Madsen, O.
14/09/18 → …
Project: PhD