Mitja Zdouc

Mitja Zdouc

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    • antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation

      Blin, K., Shaw, S., Vader, L., Szenei, J., Reitz, Z. L., Augustijn, H. E., Cediel-Becerra, J. D. D., de Crecy-Lagard, V., Koetsier, R. A., Williams, S. E., Cruz-Morales, P., Wongwas, S., Segurado Luchsinger, A., Biermann, F., Korenskaia, A., Zdouc, M. M., Meijer, D., Terlouw, B. R., van der Hooft, J. J. J. & Ziemert, N. & 7 others, Helfrich, E. J. N., Masschelein, J., Corre, C., Chevrette, M. G., van Wezel, G. P., Medema, M. H. & Weber, T., 25 Apr 2025, (E-pub ahead of print) In: Nucleic acids research. 7 p., gkaf334.

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access

    • MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

      Zdouc, M. M., Blin, K., Louwen, N. L. L., Navarro, J., Loureiro, C., Bader, C. D., Bailey, C. B., Barra, L., Booth, T. J., Bozhüyük, K. A. J., Cediel-Becerra, J. D. D., Charlop-Powers, Z., Chevrette, M. G., Chooi, Y. H., D’Agostino, P. M., de Rond, T., Pup, E. D., Duncan, K. R., Gu, W. & Hanif, N. & 268 others, Helfrich, E., Jenner, M., Katsuyama, Y., Korenskaia, A., Krug, D., Libis, V., Lund, G. A., Mantri, S., Morgan, K. D., Owen, C., Phan, C. S., Philmus, B., Reitz, Z., Robinson, S. L., Singh, K. S., Teufel, R., Tong, Y., Tugizimana, F., Ulanova, D., Winter, J., Aguilar, C., Akiyama, D. Y., Al-Salihi, S., Alanjary, M., Alberti, F., Aleti, G., Alharthi, S. A., Arias Rojo, M. Y., Arishi, A., Augustijn, H. E., Avalon, N. E., Avelar-Rivas, A., Axt, K. K., Barbieri, H. B., Barbosa, J. C. J., Segato, L. G. B., Barrett, S. E., Baunach, M., Beemelmanns, C., Beqaj, D., Berger, T., Bernaldo-Agüero, J., Bettenbühl, S. M., Bielinski, V. A., Biermann, F., Borges, R. M., Borriss, R., Breitenbach, M., Bretscher, K. M., Brigham, M. W., Buedenbender, L., Bulcock, B. W., Cano-Prieto, C., Capela, J., Carrion, V. J., Carter, R. S., Castelo-Branco, R., Castro-Falcón, G., Chagas, F. O., Charria-Girón, E., Chaudhri, A. A., Chaudhry, V., Choi, H., Choi, Y., Choupannejad, R., Chromy, J., Chue Donahey, M. S., Collemare, J., Connolly, J. A., Creamer, K. E., Crüsemann, M., Cruz, A. A., Cumsille, A., Dallery, J. F., Damas-Ramos, L. C., Damiani, T., de Kruijff, M., Martín, B. D., Sala, G. D., Dillen, J., Doering, D. T., Dommaraju, S. R., Durusu, S., Egbert, S., Ellerhorst, M., Faussurier, B., Fetter, A., Feuermann, M., Fewer, D. P., Foldi, J., Frediansyah, A., Garza, E. A., Gavriilidou, A., Gentile, A., Gerke, J., Gerstmans, H., Gomez-Escribano, J. P., González-Salazar, L. A., Grayson, N. E., Greco, C., Gris Gomez, J. E., Guerra, S., Flores, S. G., Gurevich, A., Gutiérrez-García, K., Hart, L., Haslinger, K., He, B., Hebra, T., Hemmann, J. L., Hindra, H., Höing, L., Holland, D. C., Holme, J. E., Horch, T., Hrab, P., Hu, J., Huynh, T. H., Hwang, J. Y., Iacovelli, R., Iftime, D., Iorio, M., Jayachandran, S., Jeong, E., Jing, J., Jung, J. J., Kakumu, Y., Kalkreuter, E., Kang, K. B., Kang, S., Kim, W., Kim, G. J., Kim, H., Kim, H. U., Klapper, M., Koetsier, R. A., Kollten, C., Kovács, Á. T., Kriukova, Y., Kubach, N., Kunjapur, A. M., Kushnareva, A. K., Kust, A., Lamber, J., Larralde, M., Larsen, N. J., Launay, A. P., Le, N. T. H., Lebeer, S., Lee, B. T., Lee, K., Lev, K. L., Li, S. M., Li, Y. X., Licona-Cassani, C., Lien, A., Liu, J., Lopez, J. A. V., Machushynets, N. V., Macias, M. I., Mahmud, T., Maleckis, M., Martinez-Martinez, A. M., Mast, Y., Maximo, M. F., McBride, C. M., McLellan, R. M., Bhatt, K. M., Melkonian, C., Merrild, A., Metsä-Ketelä, M., Mitchell, D. A., Müller, A. V., Nguyen, G. S., Nguyen, H. T., Niedermeyer, T. H. J., O’Hare, J. H., Ossowicki, A., Ostash, B. O., Otani, H., Padva, L., Paliyal, S., Pan, X., Panghal, M., Parade, D. S., Park, J., Parra, J., Rubio, M. P., Pham, H. T., Pidot, S. J., Piel, J., Pourmohsenin, B., Rakhmanov, M., Ramesh, S., Rasmussen, M. H., Rego, A., Reher, R., Rice, A. J., Rigolet, A., Romero-Otero, A., Rosas-Becerra, L. R., Rosiles, P. Y., Rutz, A., Ryu, B., Sahadeo, L. A., Saldanha, M., Salvi, L., Sánchez-Carvajal, E., Santos-Medellin, C., Sbaraini, N., Schoellhorn, S. M., Schumm, C., Sehnal, L., Selem, N., Shah, A. D., Shishido, T. K., Sieber, S., Silviani, V., Singh, G., Singh, H., Sokolova, N., Sonnenschein, E. C., Sosio, M., Sowa, S. T., Steffen, K., Stegmann, E., Streiff, A. B., Strüder, A., Surup, F., Svenningsen, T., Sweeney, D., Szenei, J., Tagirdzhanov, A., Tan, B., Tarnowski, M. J., Terlouw, B. R., Rey, T., Thome, N. U., Ortega, L. R. T., Tørring, T., Trindade, M., Truman, A. W., Tvilum, M., Udwary, D. W., Ulbricht, C., Vader, L., van Wezel, G. P., Walmsley, M., Warnasinghe, R., Weddeling, H. G., Weir, A. N. M., Williams, K., Williams, S. E., Witte, T. E., Wood Rocca, S. M., Yamada, K., Yang, D., Yang, D., Yu, J., Zhou, Z., Ziemert, N., Zimmer, L., Zimmermann, A., Zimmermann, C., van der Hooft, J. J. J., Linington, R. G., Weber, T. & Medema, M. H., 6 Jan 2025, In: Nucleic acids research. 53, D1, 13 p.

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access
      21 Citations (Scopus)

    • Non-targeted metabolomics-based molecular networking enables the chemical characterization of Rumex sanguineus, a wild edible plant

      Ramundi, V., Zdouc, M. M., Donati, E., van der Hooft, J. J. J., Cimini, S. & Righetti, L., 24 Jan 2025, In: Metabolomics : Official journal of the Metabolomic Society. 21, 16 p., 19.

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access
      1 Citation (Scopus)

    • Olive mill solid waste induces beneficial mushroom-specialized metabolite diversity revealed by computational metabolomics strategies

      Khatib, S., Pereman, I., Kostanda, E., Zdouc, M. M., Ezov, N., Schweitzer, R. & van der Hooft, J. J. J., Apr 2025, In: Metabolomics. 21, 58.

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access

    • FERMO v.0.8.11

      Zdouc, M., Bayona Maldonado, L. M., Augustijn, H., Soldatou, S., de Jonge, N., Jaspars, M., Van Wezel, G. P., Medema, M. & van der Hooft, J. J. J., 16 Apr 2023

      Research output: Non-textual form › Software

      Open Access
    View all 7 research outputs

    • NPLinker eScience Workshop on Natural Product Genome & Metabolome Mining Materials

      van der Hooft, J. (Creator), Medema, M. (Creator), Weber, T. (Creator), Leao, T. (Creator), Navarro Munoz, J. (Creator), Schmid, R. (Creator), Brungs, C. (Creator), Zdouc, M. (Creator), Terlouw, B. (Creator), Barona-Gómez, P. (Creator) & Geng, C. (Creator), Wageningen University & Research, 5 Apr 2023

      DOI: 10.5281/zenodo.7801712

      Dataset

    • The Minimum Information about a Biosynthetic Gene Cluster (MIBiG) data repository

      Zdouc, M. M. (Creator), Blin, K. (Creator), Louwen, N. L. L. (Creator), Navarro, J. (Creator), Loureiro, C. (Creator), Bader, C. D. (Creator), Bailey, C. B. (Creator), Barra, L. (Creator), Booth, T. J. (Creator), Bozhüyük, K. A. J. (Creator), Cediel-Becerra, J. D. D. (Creator), Charlop-Powers, Z. (Creator), Chevrette, M. G. (Creator), Chooi, Y. H. (Creator), D’Agostino, P. M. (Creator), de Rond, T. (Creator), Pup, E. D. (Creator), Duncan, K. R. (Creator), Gu, W. (Creator), Hanif, N. (Creator), Helfrich, E. (Creator), Jenner, M. (Creator), Katsuyama, Y. (Creator), Korenskaia, A. (Creator), Krug, D. (Creator), Libis, V. (Creator), Lund, G. A. (Creator), Mantri, S. (Creator), Morgan, K. D. (Creator), Owen, C. (Creator), Phan, C. S. (Creator), Philmus, B. (Creator), Reitz, Z. (Creator), Robinson, S. L. (Creator), Singh, K. S. (Creator), Teufel, R. (Creator), Tong, Y. (Creator), Tugizimana, F. (Creator), Ulanova, D. (Creator), Winter, J. (Creator), Aguilar, C. (Creator), Akiyama, D. Y. (Creator), Al-Salihi, S. (Creator), Alanjary, M. (Creator), Alberti, F. (Creator), Aleti, G. (Creator), Alharthi, S. A. (Creator), Arias Rojo, M. Y. (Creator), Arishi, A. (Creator), Augustijn, H. E. (Creator), Avalon, N. E. (Creator), Avelar-Rivas, A. (Creator), Axt, K. K. (Creator), Barbieri, H. B. (Creator), Barbosa, J. C. J. (Creator), Segato, L. G. B. (Creator), Barrett, S. E. (Creator), Baunach, M. (Creator), Beemelmanns, C. (Creator), Beqaj, D. (Creator), Berger, T. (Creator), Bernaldo-Agüero, J. (Creator), Bettenbühl, S. M. (Creator), Bielinski, V. A. (Creator), Biermann, F. (Creator), Borges, R. M. (Creator), Borriss, R. (Creator), Breitenbach, M. (Creator), Bretscher, K. M. (Creator), Brigham, M. W. (Creator), Buedenbender, L. (Creator), Bulcock, B. W. (Creator), Cano-Prieto, C. (Creator), Capela, J. (Creator), Carrion, V. J. (Creator), Carter, R. S. (Creator), Castelo-Branco, R. (Creator), Castro-Falcón, G. (Creator), Chagas, F. O. (Creator), Charria-Girón, E. (Creator), Chaudhri, A. A. (Creator), Chaudhry, V. (Creator), Choi, H. (Creator), Choi, Y. (Creator), Choupannejad, R. (Creator), Chromy, J. (Creator), Chue Donahey, M. S. (Creator), Collemare, J. (Creator), Connolly, J. A. (Creator), Creamer, K. E. (Creator), Crüsemann, M. (Creator), Cruz, A. A. (Creator), Cumsille, A. (Creator), Dallery, J. F. (Creator), Damas-Ramos, L. C. (Creator), Damiani, T. (Creator), de Kruijff, M. (Creator), Martín, B. D. (Creator), Sala, G. D. (Creator), Dillen, J. (Creator), Doering, D. T. (Creator), Dommaraju, S. R. (Creator), Durusu, S. (Creator), Egbert, S. (Creator), Ellerhorst, M. (Creator), Faussurier, B. (Creator), Fetter, A. (Creator), Feuermann, M. (Creator), Fewer, D. P. (Creator), Foldi, J. (Creator), Frediansyah, A. (Creator), Garza, E. A. (Creator), Gavriilidou, A. (Creator), Gentile, A. (Creator), Gerke, J. (Creator), Gerstmans, H. (Creator), Gomez-Escribano, J. P. (Creator), González-Salazar, L. A. (Creator), Grayson, N. E. (Creator), Greco, C. (Creator), Gris Gomez, J. E. (Creator), Guerra, S. (Creator), Flores, S. G. (Creator), Gurevich, A. (Creator), Gutiérrez-García, K. (Creator), Hart, L. (Creator), Haslinger, K. (Creator), He, B. (Creator), Hebra, T. (Creator), Hemmann, J. L. (Creator), Hindra, H. (Creator), Höing, L. (Creator), Holland, D. C. (Creator), Holme, J. E. (Creator), Horch, T. (Creator), Hrab, P. (Creator), Hu, J. (Creator), Huynh, T. H. (Creator), Hwang, J. Y. (Creator), Iacovelli, R. (Creator), Iftime, D. (Creator), Iorio, M. (Creator), Jayachandran, S. (Creator), Jeong, E. (Creator), Jing, J. (Creator), Jung, J. J. (Creator), Kakumu, Y. (Creator), Kalkreuter, E. (Creator), Kang, K. B. (Creator), Kang, S. (Creator), Kim, W. (Creator), Kim, G. J. (Creator), Kim, H. (Creator), Kim, H. U. (Creator), Klapper, M. (Creator), Koetsier, R. A. (Creator), Kollten, C. (Creator), Kovács, Á. T. (Creator), Kriukova, Y. (Creator), Kubach, N. (Creator), Kunjapur, A. M. (Creator), Kushnareva, A. K. (Creator), Kust, A. (Creator), Lamber, J. (Creator), Larralde, M. (Creator), Larsen, N. J. (Creator), Launay, A. P. (Creator), Le, N. T. H. (Creator), Lebeer, S. (Creator), Lee, B. T. (Creator), Lee, K. (Creator), Lev, K. L. (Creator), Li, S. M. (Creator), Li, Y. X. (Creator), Licona-Cassani, C. (Creator), Lien, A. (Creator), Liu, J. (Creator), Lopez, J. A. V. (Creator), Machushynets, N. V. (Creator), Macias, M. I. (Creator), Mahmud, T. (Creator), Maleckis, M. (Creator), Martinez-Martinez, A. M. (Creator), Mast, Y. (Creator), Maximo, M. F. (Creator), McBride, C. M. (Creator), McLellan, R. M. (Creator), Bhatt, K. M. (Creator), Melkonian, C. (Creator), Merrild, A. (Creator), Metsä-Ketelä, M. (Creator), Mitchell, D. A. (Creator), Müller, A. V. (Creator), Nguyen, G. S. (Creator), Nguyen, H. T. (Creator), Niedermeyer, T. H. J. (Creator), O’Hare, J. H. (Creator), Ossowicki, A. (Creator), Ostash, B. O. (Creator), Otani, H. (Creator), Padva, L. (Creator), Paliyal, S. (Creator), Pan, X. (Creator), Panghal, M. (Creator), Parade, D. S. (Creator), Park, J. (Creator), Parra, J. (Creator), Rubio, M. P. (Creator), Pham, H. T. (Creator), Pidot, S. J. (Creator), Piel, J. (Creator), Pourmohsenin, B. (Creator), Rakhmanov, M. (Creator), Ramesh, S. (Creator), Rasmussen, M. H. (Creator), Rego, A. (Creator), Reher, R. (Creator), Rice, A. J. (Creator), Rigolet, A. (Creator), Romero-Otero, A. (Creator), Rosas-Becerra, L. R. (Creator), Rosiles, P. Y. (Creator), Rutz, A. (Creator), Ryu, B. (Creator), Sahadeo, L. A. (Creator), Saldanha, M. (Creator), Salvi, L. (Creator), Sánchez-Carvajal, E. (Creator), Santos-Medellin, C. (Creator), Sbaraini, N. (Creator), Schoellhorn, S. M. (Creator), Schumm, C. (Creator), Sehnal, L. (Creator), Selem, N. (Creator), Shah, A. D. (Creator), Shishido, T. K. (Creator), Sieber, S. (Creator), Silviani, V. (Creator), Singh, G. (Creator), Singh, H. (Creator), Sokolova, N. (Creator), Sonnenschein, E. C. (Creator), Sosio, M. (Creator), Sowa, S. T. (Creator), Steffen, K. (Creator), Stegmann, E. (Creator), Streiff, A. B. (Creator), Strüder, A. (Creator), Surup, F. (Creator), Svenningsen, T. (Creator), Sweeney, D. (Creator), Szenei, J. (Creator), Tagirdzhanov, A. (Creator), Tan, B. (Creator), Tarnowski, M. J. (Creator), Terlouw, B. R. (Creator), Rey, T. (Creator), Thome, N. U. (Creator), Ortega, L. R. T. (Creator), Tørring, T. (Creator), Trindade, M. (Creator), Truman, A. W. (Creator), Tvilum, M. (Creator), Udwary, D. W. (Creator), Ulbricht, C. (Creator), Vader, L. (Creator), van Wezel, G. P. (Creator), Walmsley, M. (Creator), Warnasinghe, R. (Creator), Weddeling, H. G. (Creator), Weir, A. N. M. (Creator), Williams, K. (Creator), Williams, S. E. (Creator), Witte, T. E. (Creator), Wood Rocca, S. M. (Creator), Yamada, K. (Creator), Yang, D. (Creator), Yang, D. (Creator), Yu, J. (Creator), Zhou, Z. (Creator), Ziemert, N. (Creator), Zimmer, L. (Creator), Zimmermann, A. (Creator), Zimmermann, C. (Creator), van der Hooft, J. J. J. (Creator), Linington, R. G. (Creator), Weber, T. (Creator) & Medema, M. H. (Creator), Wageningen University & Research, 15 Nov 2024

      DOI: 10.5281/zenodo.13367755

      Dataset

    • 1 Oral presentation