Martin Boer

dr.ir.

    20002019
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    Research Output 2000 2019

    2019
    1 Citation (Scopus)

    Combining Crop Growth Modeling and Statistical Genetic Modeling to Evaluate Phenotyping Strategies

    Bustos-Korts, D., Boer, M. P., Malosetti, M., Chapman, S., Chenu, K., Zheng, B. & van Eeuwijk, F. A., 27 Nov 2019, In : Frontiers in Plant Science. 10, 1491.

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    phenotype
    crops
    prediction
    production technology
    yield components

    Construction of Genetic Linkage Maps in Multiparental Populations

    Zheng, C., Boer, M. P. & van Eeuwijk, F. A., 1 Aug 2019, In : Genetics. 212, 4, p. 1031-1044 14 p.

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    Genetic Linkage
    Population
    Quantitative Trait Loci
    Software
    Pedigree
    1 Citation (Scopus)

    From QTLs to Adaptation Landscapes: Using Genotype-To-Phenotype Models to Characterize G×E Over Time

    Bustos-Korts, D., Malosetti, M., Chenu, K., Chapman, S., Boer, M. P., Zheng, B. & van Eeuwijk, F. A., 4 Dec 2019, In : Frontiers in Plant Science. 10, 1540.

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    quantitative trait loci
    phenotype
    genotype
    wheat
    crop models
    17 Citations (Scopus)

    Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding

    van Eeuwijk, F. A., Bustos-Korts, D., Millet, E. J., Boer, M. P., Kruijer, W., Thompson, A., Malosetti, M., Iwata, H., Quiroz, R., Kuppe, C., Muller, O., Blazakis, K. N., Yu, K., Tardieu, F. & Chapman, S. C., May 2019, In : Plant Science. 282, p. 23-39

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    plant breeding
    Genotype
    phenotype
    Single Nucleotide Polymorphism
    Plant Physiological Phenomena
    2018
    4 Citations (Scopus)

    Accurate genotype imputation in multiparental populations from low-coverage sequence

    Zheng, C., Boer, M. P. & van Eeuwijk, F. A., 1 Sep 2018, In : Genetics. 210, 1, p. 71-82 12 p.

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    Genotype
    Population
    Single Nucleotide Polymorphism
    Technology
    Costs and Cost Analysis
    23 Citations (Scopus)

    Correcting for spatial heterogeneity in plant breeding experiments with P-splines

    Rodríguez-Álvarez, M. X., Boer, M. P., van Eeuwijk, F. A. & Eilers, P. H. C., 1 Mar 2018, In : Spatial Statistics. 23, p. 52-71

    Research output: Contribution to journalArticleAcademicpeer-review

    P-splines
    Spatial Heterogeneity
    plant breeding
    Splines
    Effective Dimension
    2 Citations (Scopus)

    Recursive algorithms for modeling genomic ancestral origins in a fixed pedigree

    Zheng, C., Boer, M. P. & van Eeuwijk, F. A., 1 Oct 2018, In : G3: Genes, Genomes, Genetics. 8, 10, p. 3231-3245

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    Pedigree
    Quantitative Trait Loci
    Genetic Recombination
    Population
    Markov Chains
    2017
    14 Citations (Scopus)

    Fine mapping of a major QTL for awn length in barley using a multiparent mapping population

    Liller, C. B., Walla, A., Boer, M. P., Hedley, P., Macaulay, M., Effgen, S., von Korff, M., van Esse, G. W. & Koornneef, M., 2017, In : Theoretical and Applied Genetics. 130, 2, p. 269-281

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    Quantitative Trait Loci
    Hordeum
    quantitative trait loci
    barley
    isogenic lines
    14 Citations (Scopus)

    Modelling spatial trends in sorghum breeding field trials using a two-dimensional P-spline mixed model

    Velazco, J. G., Rodríguez-Álvarez, M. X., Boer, M. P., Jordan, D. R., Eilers, P. H. C., Malosetti, M. & van Eeuwijk, F. A., 2017, In : Theoretical and Applied Genetics. 130, 7, p. 1375-1392

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    Sorghum
    Breeding
    field experimentation
    breeding
    Spatial Analysis
    2016
    23 Citations (Scopus)

    Predicting responses in multiple environments: Issues in relation to genotype × Environment interactions

    Malosetti Zunin, M., Bustos-Korts, D., Boer, M. P. & van Eeuwijk, F. A., 2016, In : Crop Science. 56, 5, p. 2210-2222

    Research output: Contribution to journalArticleAcademicpeer-review

    genotype-environment interaction
    prediction
    genomics
    crop models
    growth models
    2015
    24 Citations (Scopus)

    First step in using molecular data for microbial food safety risk assessment; hazard identification of Escherichia coli O157: H7 by coupling genomic data with in vitro adherence to human epithelial cells

    Pielaat, A., Boer, M. P., Wijnands, L. M., van Hoek, A. H. A. M., Bouw, E., Barker, G. C., Teunis, P. F. M., Aarts, H. J. M. & Franz, E., 2015, In : International Journal of Food Microbiology. 213, p. 130-138

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    hazard identification
    microbiological risk assessment
    Food safety
    Escherichia coli O157
    Food Safety
    8 Citations (Scopus)
    Open Access
    Lycopersicon esculentum
    Genotype
    Phenotype
    DNA
    Fruit
    56 Citations (Scopus)

    Marker-Based Estimation of Heritability in Immortal Populations

    Kruijer, W. T., Boer, M. P., Malosetti, M., Flood, P. J., Engel, B., Kooke, R., Keurentjes, J. J. B. & van Eeuwijk, F. A., 2015, In : Genetics. 199, 2, p. 379-398 20 p.

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    Population
    Genome-Wide Association Study
    Genotype
    Medical Genetics
    Genetic Markers
    14 Citations (Scopus)

    Reconstruction of genome ancestry blocks in multiparental populations

    Zheng, C., Boer, M. P. & van Eeuwijk, F. A., 2015, In : Genetics. 200, 4, p. 1073-1087

    Research output: Contribution to journalArticleAcademicpeer-review

    Recombinant DNA
    Quantitative Trait Loci
    X Chromosome
    Arabidopsis
    Genetic Recombination
    2014
    6 Citations (Scopus)

    A General Modeling Framework for Genome Ancestral Origins in Multiparental Populations

    Zheng, C., Boer, M. P. & van Eeuwijk, F. A., 2014, In : Genetics. 198, p. 87-101

    Research output: Contribution to journalArticleAcademicpeer-review

    Genome
    Population
    Quantitative Trait Loci
    Genetic Recombination
    Self-Fertilization
    9 Citations (Scopus)

    Genetic diversity and linkage disequilibrium analysis in elite sugar beet breeding lines and wild beet accessions

    Adetunji, I., Willems, G., Tschoep, H., Bürkholz, A., Barnes, S., Boer, M. P., Malosetti, M., Horemans, S. & van Eeuwijk, F., 2014, In : Theoretical and Applied Genetics. 127, 3, p. 559-571

    Research output: Contribution to journalArticleAcademicpeer-review

    Genetic Linkage
    Beta vulgaris
    Linkage Disequilibrium
    beets
    linkage disequilibrium
    18 Citations (Scopus)
    Brassica rapa
    genotype-environment interaction
    Droughts
    Quantitative Trait Loci
    quantitative trait loci
    2012

    A latent curve approach using penalized regression to model phenotypic plasticity and genotype by environment interaction

    van Eeuwijk, F. A., Schnabel, S. K., Boer, M. P., Malosetti, M. & Eilers, P. H. C., 2012.

    Research output: Contribution to conferencePosterProfessional

    22 Citations (Scopus)

    QTL linkage analysis of connected populations using ancestral marker and pedigree information

    Bink, M. C. A. M., Radu Totir, L., ter Braak, C. J. F., Winkler, C. R., Boer, M. P. & Smith, O. S., 2012, In : Theoretical and Applied Genetics. 124, 6, p. 1097-1113

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    Quantitative Trait Loci
    Pedigree
    pedigree
    linkage (genetics)
    quantitative trait loci
    2011
    93 Citations (Scopus)
    Open Access
    inbred lines
    quantitative trait loci
    Arabidopsis
    heterozygosity
    Arabidopsis thaliana

    Bodemgezondheid binnen bedrijfssystemen: BODEM

    Korthals, G. W., Boer, M. P., Molendijk, L. P. G., Thoden, T. C. & Visser, J. H. M., 2011, In : Gewasbescherming. 42, 1, p. 11

    Research output: Contribution to journalArticleProfessional

    Open Access

    Over de Streep

    van Os, G. J., Boer, M. P., Molendijk, L. P. G. & Postma, J., 2011, In : Gewasbescherming. 42, 1, p. 18-19

    Research output: Contribution to journalArticleProfessional

    Open Access
    2010
    28 Citations (Scopus)

    Ecological consequences of global bifurcations in some food chain models

    van Voorn, G. A. K., Kooi, B. W. & Boer, M. P., 2010, In : Mathematical Biosciences. 226, 2, p. 120-133

    Research output: Contribution to journalArticleAcademicpeer-review

    Food Chain Model
    Food Chain
    Global Bifurcation
    food chain
    environmental impact
    14 Citations (Scopus)

    Identity-by-Descent Matrix Decomposition Using Latent Ancestral Allele Models

    ter Braak, C. J. F., Boer, M. P., Totir, L., Winkler, C. R., Smith, O. S. & Bink, M. C. A. M., 2010, In : Genetics. 185, 3, p. 1045-1057

    Research output: Contribution to journalArticleAcademicpeer-review

    Alleles
    Genetic Linkage
    Genetic Association Studies
    Pedigree
    Zea mays
    2009

    A mixed model Quantitative Trait Loci Analysis for multiple environment trails

    Boer, M. P., 2009, Statistics in a Changing Society - 175 Years of Progress, London, UK, 7 - 11 September, 2009. Boer, M. P. (ed.). Edinburgh, p. 68-69

    Research output: Chapter in Book/Report/Conference proceedingAbstract

    2 Citations (Scopus)

    Searching for interacting QTL in related populations of an outbreeding species

    Jansen, J., Boer, M. P., Bink, M. C. A. M. & van de Weg, W. E., 2009, In : Euphytica. 166, 1, p. 131-144

    Research output: Contribution to journalArticleAcademicpeer-review

    outbreeding
    Quantitative Trait Loci
    quantitative trait loci
    Population
    loci
    2008
    20 Citations (Scopus)
    Open Access
    Arabidopsis
    quantitative trait loci
    Arabidopsis thaliana
    Population
    Seeds
    80 Citations (Scopus)

    Bayesian analysis of complex traits in pedigreed plant populations

    Bink, M. C. A. M., Boer, M. P., ter Braak, C. J. F., Jansen, J., Voorrips, R. E. & van de Weg, W. E., 2008, In : Euphytica. 161, 1-2, p. 85-96

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    Bayes Theorem
    Bayesian theory
    quantitative trait loci
    Breeding
    linkage groups

    Searching for interacting QTL in related populations of an outbreeding species

    Jansen, J., Boer, M. P., Bink, M. C. A. M. & van de Weg, W. E., 2008.

    Research output: Contribution to conferenceAbstractAcademic

    Open Access
    outbreeding
    quantitative trait loci
    loci
    diallel analysis
    pedigree
    2007
    132 Citations (Scopus)

    A Mixed-Model Quantitative Trait Loci (QTL) Analysis for Multiple-Environment Trial Data Using Environmental Covariables for QTL-by-Environment Interactions, With an Example in Maize

    Boer, M. P., Wright, D., Feng, L., Podlich, D. W., Luo, L., Cooper, M. & van Eeuwijk, F. A., 2007, In : Genetics. 177, 3, p. 1801-1813

    Research output: Contribution to journalArticleAcademicpeer-review

    Quantitative Trait Loci
    Zea mays
    Genotype
    Statistical Models
    102 Citations (Scopus)

    Heteroclinic orbits indicate overexploitation in predator-prey systems with a strong Allee effect

    van Voorn, G. A. K., Hemerik, L., Boer, M. P. & Kooi, B. W., 2007, In : Mathematical Biosciences. 209, p. 451-469

    Research output: Contribution to journalArticleAcademicpeer-review

    Predator prey systems
    Allee Effect
    Heteroclinic Orbit
    orbits
    Predator-prey System

    Modelling the genetic basis of response curves underlying genotype x environment interaction

    van Eeuwijk, F. A., Malosetti, M. & Boer, M. P., 2007, Scale and Complexity in Plant Systems Research: Gene Plant-Crop Relations. Spiertz, J. H. J., Struik, P. C. & van Laar, H. H. (eds.). Dordrecht, p. 115-126 332 p. (Wageningen UR Frontis Series; no. 21).

    Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

    Open Access

    Multi-trait multi-environment qtl modelling for drought-stress adaptation in maize

    Malosetti, M., Ribaut, J. M., Vargas, M., Crossa, J., Boer, M. P. & van Eeuwijk, F. A., 2007, Scale and Complexity in Plant Systems Research. Spiertz, J. H. J., Struik, P. C. & van Laar, H. H. (eds.). Dordrecht, p. 25-36 332 p. (Wageningen UR Frontis Series; no. 21).

    Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

    Open Access
    2006

    Genotype by environment interaction: basics and beyond

    van Eeuwijk, F. A., Malosetti, M. & Boer, M. P., 2006, Plant Breeding: The Arnell Hallauer International Symposium. Lamkey, K. & Michael, L. (eds.). Oxford: Blackwell Publishing, p. 155-170 379 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

    Multi-trait QTL analysis based on mixed models with parsimonious covariance matrices

    Malosetti, M., Boer, M. P., Bink, M. C. A. M. & van Eeuwijk, F. A., 2006.

    Research output: Contribution to conferenceConference paperAcademic

    2005
    52 Citations (Scopus)

    Extending Xu's Bayesian model for estimating polygenic effects using markers of the entire genome

    ter Braak, C. J. F., Boer, M. P. & Bink, M. C. A. M., 2005, In : Genetics. 170, 3, p. 1435-1438

    Research output: Contribution to journalArticleAcademicpeer-review

    Genome
    2004

    A Flexible Bayesian framework for multiple QTL mapping in pedigreed populations

    Bink, M. C. A. M., Boer, M. P., Jansen, J. & ter Braak, C. J. F., 2004.

    Research output: Contribution to conferenceAbstractAcademic

    quantitative trait loci
    geneticists
    plant breeders
    breeding
    pedigree
    2003
    17 Citations (Scopus)

    Chaotic behaviour of a predator-prey system

    Kooi, B. W. & Boer, M. P., 2003, In : Dynamics of Continuous, Discrete and Impulsive Systems. Series B, Applications and Algorithms. 10, 1-3, p. 259-272

    Research output: Contribution to journalArticleAcademicpeer-review

    Predator prey systems
    Predator-prey System
    Chaotic Behavior
    Chemostats
    Chemostat
    2002
    39 Citations (Scopus)

    A penalized likelihood method for mapping epistatic quantitative trait loci with one-dimensional genome searches

    Boer, M. P., ter Braak, C. J. F. & Jansen, R. C., 2002, In : Genetics. 162, 2, p. 951-960

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    Quantitative Trait Loci
    Genome
    13 Citations (Scopus)
    2000

    MapQTL 4.0: Software for the calculation of QTL positions on genetic maps (user manual)

    van Ooijen, J. W., Boer, M. P., Jansen, R. C. & Maliepaard, C. A., 2000, Wageningen: Plant Research International.

    Research output: Book/ReportReportProfessional

    The dynamics of tritrophic food chains

    Boer, M. P., 2000

    Research output: Thesisinternal PhD, other