Martijn Derks

Correia Silva Santana Marques, A., Dias Costa, M. C., Chathuri, U., Jonkheer, E., Zhao, T., Schijlen, E. G. W. M., Derks, M. F. L., Nijveen, H., Marcet-Houben, M., Julca, I., Delahaie, J., Schranz, E., Gabaldon, T., Pelletier, S., Leprince, O., Ligterink, W., Buitink, J., Hilhorst, H. W. M. & Farrant, J. M., 10 Jun 2019, BioRxiv.

Research output: Working paper › Academic

Open Access

A QTL for number of teats shows breed specific effects on number of vertebrae in pigs: Bridging the gap between molecular and quantitative genetics

Van Son, M., Lopes, M. S., Martell, H. J., Derks, M. F. L., Gangsei, L. E., Kongsro, J., Wass, M. N., Grindflek, E. H. & Harlizius, B., 26 Mar 2019, In: Frontiers in Genetics. 10, MAR, 00272.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

30 Citations (Scopus)

Deleterious alleles in the context of domestication, inbreeding, and selection

Bosse, M., Megens, H.-J., Derks, M. F. L., de Cara, Á. M. R. & Groenen, M. A. M., 2019, In: Evolutionary Applications. 12, 1, p. 6-17

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

86 Citations (Scopus)

Detection of a Frameshift Deletion in the SPTBN4 Gene Leads to Prevention of Severe Myopathy and Postnatal Mortality in Pigs

Derks, M. F. L., Harlizius, B., Lopez, M. S., Greijdanus-van der Putten, S., Dibbits, B. W., Laport, K., Megens, H. J. W. C. & Groenen, M., 26 Nov 2019, In: Frontiers in Genetics Livestock Genomics. 10, 9 p., 1226.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

6 Citations (Scopus)

Detection of reciprocal translocations in pigs using short read sequencing

Bouwman, A. C., te Pas, M. F. W. (Editor), Derks, M. F. L. (Editor), Groenen, M. (Editor), Veerkamp, R. F. (Editor), Broekhuijse, M. (Editor) & Harlizius, B. (Editor), 28 Aug 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 255-255 (Book of abstracts EAAP; no. 25).

Research output: Chapter in Book/Report/Conference proceeding › Abstract

Detection of reciprocal translocations using short read sequencing

Bouwman, A. C., te Pas, M. F. W., Derks, M. F. L., Groenen, M., Veerkamp, R. F., Broekhuijse, M. L. W. J. & Harlizius, B., 10 Feb 2019.

Research output: Contribution to conference › Poster › Academic

Open Access

Effect of population bottlenecks on patterns of deleterious variation in small captive populations

Bortoluzzi, C., Bosse, M., Derks, M. F. L., Crooijmans, R. P. M. A., Groenen, M. & Megens, H. J. W. C., 26 Aug 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 106-106 (Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceeding › Abstract

Open Access

Loss of function mutations in essential genes cause embryonic lethality in pigs

Derks, M. F. L., Gjuvsland, A. B., Bosse, M., Lopes, M. S., van Son, M., Harlizius, B., Tan, B. F., Hamland, H., Grindflek, E., Groenen, M. A. M. & Megens, H. J., 1 Mar 2019, In: Plos Genetics. 15, 3, p. e1008055

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

37 Citations (Scopus)

The Genomic Complexity of a Large Inversion in Great Tits

da Silva, V. H., Laine, V. N., Bosse, M., Spurgin, L. G., Derks, M. F. L., van Oers, K., Dibbits, B., Slate, J., Crooijmans, R. P. M. A., Visser, M. E. & Groenen, M. A. M., 1 Jul 2019, In: Genome Biology and Evolution. 11, 7, p. 1870-1881 12 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

13 Citations (Scopus)

2018

A comprehensive detection and characterization of deleterious variants in traditional chicken breeds

Bortoluzzi, C., Derks, M. F. L., Weigend, S., Groenen, M. & Megens, H. J. W. C., Jul 2018. 1 p.

Research output: Contribution to conference › Poster › Academic

Open Access

A novel loss-of-function variant in transmembrane protein 263 (TMEM263) of autosomal dwarfism in chicken

Wu, Z., Derks, M. F. L., Dibbits, B., Megens, H. J., Groenen, M. A. M. & Crooijmans, R. P. M. A., 7 Jun 2018, In: Frontiers in Genetics. 9, 193.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

11 Citations (Scopus)

A survey of deleterious variation in highly managed pig populations

Derks, M. F. L., Megens, H. J. W. C., Bosse, M., Lopes, M. S., Harlizius, B. & Groenen, M., 24 Feb 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production. 7 p. 11.522

Research output: Chapter in Book/Report/Conference proceeding › Conference paper › Academic

Open Access

A survey of functional genomic variation in domesticated chickens

Derks, M. F. L., Megens, H. J., Bosse, M., Visscher, J., Peeters, K., Bink, M. C. A. M., Vereijken, A., Gross, C., De Ridder, D., Reinders, M. J. T. & Groenen, M. A. M., 16 Apr 2018, In: Genetics Selection Evolution. 50, 1, 17.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

26 Citations (Scopus)

Balancing selection on a recessive lethal deletion with pleiotropic effects on two neighboring genes in the porcine genome

Derks, M. F. L., Lopes, M. S., Bosse, M., Madsen, O., Dibbits, B., Harlizius, B., Groenen, M. A. M. & Megens, H. J., 19 Sept 2018, In: Plos Genetics. 14, 9, 20 p., e1007661.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

26 Citations (Scopus)

Early and late feathering in Turkey and chicken: Same gene but different mutations

Derks, M. F. L., Herrero-Medrano, J. M., Crooijmans, R. P. M. A., Vereijken, A., Long, J. A., Megens, H. J. & Groenen, M. A. M., 22 Mar 2018, In: Genetics Selection Evolution. 50, 1, 7.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

16 Citations (Scopus)

In silico predictions of variant deleteriousness in the genomes of pig species

Gross, C., Derks, M., de Ridder, D. & Reinders, M., 12 Dec 2018. 1 p.

Research output: Contribution to conference › Abstract

Open Access

2017

A footprint of desiccation tolerance in the genome of Xerophyta viscosa

Dias Costa, M. C., Silva Artur, M. A., Maia de Oliveira, J., Jonkheer, E., Derks, M., Nijveen, H., Williams, B., Mundree, S., Jiménez-Gómez, J. M., Hesselink, T., Schijlen, E. G. W. M., Ligterink, W., Oliver, M. J., Farrant, J. M. & Hilhorst, H. W. M., 27 Mar 2017, In: Nature Plants. 3, 10 p., 17038.

Research output: Contribution to journal › Article › Academic › peer-review

106 Citations (Scopus)

A survey of deleterious variants in highly managed commercial layer lines

Derks, M. F. L., Megens, H. J. W. C., Bosse, M., Gross, C., Reijnders, M., de Ridder, D. & Groenen, M., 2017.

Research output: Contribution to conference › Poster › Academic

Open Access

A systematic survey to identify lethal recessive variation in highly managed pig populations

Derks, M. F. L., Megens, H. J., Bosse, M., Lopes, M. S., Harlizius, B. & Groenen, M. A. M., 9 Nov 2017, In: BMC Genomics. 18, 1, 858.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

34 Citations (Scopus)

Avian Ecological Epigenetics: the role of DNA methylation in the evolution of animal personality

van Oers, K., Derks, M. F. L., Schachtschneider, K. M., Laine, V. N., Madsen, O. & Verhoeven, K. J. F., 23 Aug 2017.

Research output: Contribution to conference › Poster › Academic

Coping with living in the soil: The genome of the parthenogenetic springtail Folsomia candida

Faddeeva-Vakhrusheva , A., Kraaijeveld, K., Derks, M. F. L., Anvar, S. Y., Agamennone, V., Suring, W., Kampfraath, A. A., Ellers, J., Le Ngoc, G., van Gestel, C. A. M., Mariën, J., Smit, S., van Straalen, N. M. & Roelofs, D., 2017, In: BMC Genomics. 18, 14 p., 493.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

95 Citations (Scopus)

Enhancing faba bean (Vicia faba L.) genome resources

Cooper, J. W., Wilson, M. H., Derks, M. F. L., Smit, S., Kunert, K. J., Cullis, C. & Foyer, C. H., 2017, In: Journal of Experimental Botany. 68, 8, p. 1941-1953

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

38 Citations (Scopus)

Genome sequences of cyberlindnera fabianii 65, pichia kudriavzevii 129, and saccharomyces cerevisiae 131 isolated from fermented masau fruits in Zimbabwe

van Rijswijck, I. M. H., Derks, M. F. L., Abee, T., de Ridder, D. & Smid, E. J., 2017, In: Genome Announcements. 5, 14, p. e0006417

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

11 Citations (Scopus)

Genomics of adaptation depends on the rate of environmental change in experimental yeast populations

Gorter, F. A., Derks, M. F. L., van den Heuvel, J., Aarts, M. G. M., Zwaan, B. J., de Ridder, D. & de Visser, J. A. G. M., 2017, In: Molecular Biology and Evolution. 34, 10, p. 2613-2626

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

18 Citations (Scopus)

NCBI-compliant genome submissions: tips and tricks to save time and money

Pirovano, W., Boetzer, M., Derks, M. F. L. & Smit, S., 2017, In: Briefings in Bioinformatics. 18, 2, p. 179-182

Research output: Contribution to journal › Article › Academic › peer-review

8 Citations (Scopus)

Survey of deleterious variants in highly managed commercial layer lines

Derks, M. F. L., Megens, H. J. W. C., Bosse, M., Gross, C., Reijnders, M., de Ridder, D. & Groenen, M., Apr 2017.

Research output: Contribution to conference › Poster › Academic

What makes inbreeding so depressing? Detection of deleterious variation in livestock populations by means of haplotype and sequence information

Derks, M. F. L., Megens, H. J. W. C., Groenen, M., Lopez, M. S., Harlizius, B. & Bosse, M., 26 Aug 2017.

Research output: Contribution to conference › Other

2016

Detection of deleterious genomic variation in domesticated animals

Derks, M. F. L., Megens, H. J. W. C., Bosse, M., Gross, C., Reijnders, M., de Ridder, D. & Groenen, M., 19 Apr 2016.

Research output: Contribution to conference › Poster › Academic

Open Access

Gene and transposable element methylation in great tit (Parus major) brain and blood

Derks, M. F. L., Schachtschneider, K. M., Madsen, O., Schijlen, E. G. W. M., Verhoeven, K. J. F. & van Oers, K., 2016, In: BMC Genomics. 17, 332.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

47 Citations (Scopus)

Gene Family Evolution Reflects Adaptation to Soil Environmental Stressors in the Genome of the Collembolan Orchesella cincta

Faddeeva-Vakhrusheva, A., Derks, M. F. L., Anvar, S. Y., Agamennone, V., Suring, W., Smit, S., van Straalen, N. M. & Roelofs, D., 12 Jul 2016, In: Genome Biology and Evolution. 8, 7, p. 2106-2117

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

49 Citations (Scopus)

Genome Sequence of Madurella mycetomatis mm55, Isolated from a Human Mycetoma Case in Sudan

Smit, S., Derks, M. F. L., Bervoets, S., Fahal, A., van Leeuwen, W., van Belkum, A. & van de Sande, W. W. J., 26 May 2016, In: Genome Announcements. 4, 3, e00418-16.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

22 Citations (Scopus)

Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual plants

Ferreira de Carvalho, J., Oplaat, C., Pappas, N., Derks, M., de Ridder, D. & Verhoeven, K. J. F., 2016, In: BMC Genomics. 17, 203.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

17 Citations (Scopus)

2015

The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology

Derks, M. F. L., Smit, S., Salis, L., Schijlen, E. G. W. M., Bossers, A., Mateman, C., Pijl, A. S., de Ridder, D., Groenen, M. A. M., Visser, M. E. & Megens, H. J. W. C., 2015, In: Genome Biology and Evolution. 7, 8, p. 2321-2332

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

63 Citations (Scopus)

Martijn Derks

Research output

Search results