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Research Output 1988 2019

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Abstract
2019

Altered hippocampal epigenetic regulation underlying reduced cognitive development in response to early life environmental insults

Schachtschneider, K. M., Welge, M. E., Auvil, L. S., Chaki, S., Rund, L. A., Madsen, O., Elmore, M. R. P., Johnson, R. W., Groenen, M. & Schook, L. B., 7 Jul 2019, ISAG 2019 Abstract Book: 37th International Society for Animal Genetics Conference, July 7-12, 2019 - Lleida, Spain. p. 158-158

Research output: Chapter in Book/Report/Conference proceedingAbstract

Epigenomics
DNA Methylation
Cognition
Genes
Overlapping Genes

Broadening the miRNA catalogue in livestock species: A contribution to the functional annotation of animal genomes.

Amaral, A. J., Anthon, C., Corsi, G., Vasconcelos, A., Marthey, S., Hoffmann, A., Lagnel, J., Haack, F., Pokharel, K., Palasca, O., Seemann, S. E., Gama, L., Groenen, M., Kantanen, J., Crooijmans, R. P. M. A., Rijnkels, M., Kalbfleisch, T., Giuffra, E., Stadler, P. F., Madsen, O. & 1 others, Gorodkin, J., 9 Jul 2019, ISAG 2019 Abstracts Book: 37th International Society for Animal Genetics Conference, July 7-12, 2019 - Lleida, Spain. p. 51-52

Research output: Chapter in Book/Report/Conference proceedingAbstract

Livestock
MicroRNAs
Genome
Sus scrofa
Technology

Detection of reciprocal translocations in pigs using short read sequencing

Bouwman, A. C., te Pas, M. F. W. (ed.), Derks, M. F. L. (ed.), Groenen, M. (ed.), Veerkamp, R. F. (ed.), Broekhuijse, M. (ed.) & Harlizius, B. (ed.), 28 Aug 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 255-255 (Book of abstracts EAAP; no. 25).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Fetal genotype effects on morphomics, fatty acids composition and transcriptomics in swine

Garcia Contreras, C., Vazquez-Gomez, M., Madsen, O., Groenen, M., Astiz, S., Nunez, Y., Benitez, R., Heras-Molina, A., Fernandez, A., Isabel, B., Rey, A. I., Gonzalez-Bulnes, A. & Ovilo, C., 7 Jul 2019, ISAG 2019 Abstract Book: 37th International Society for Animal Genetics Conference, July 7-12, 2019 - Lleida, Spain. p. 148-149

Research output: Chapter in Book/Report/Conference proceedingAbstract

transcriptomics
fetus
fatty acid composition
swine
genotype

High resolution copy number variation analysis using two cattle genome assemblies

Lee, Y. L., Bosse, M. (ed.), Veerkamp, R. F. (ed.), Mullaart, E. (ed.), Groenen, M. (ed.) & Bouwman, A. C. (ed.), 26 Aug 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, 209 p. (Book of abstracts EAAP; no. 25).

Research output: Chapter in Book/Report/Conference proceedingAbstract

The little Pygmy hog (Porcula salvania), a big piece in resolving the fascinating history of the complex speciation of the Suidae

Liu, L., Bosse, M., Megens, H. J. W. C., Frantz, L. A. F., Lee, Y. L., Irving-Pease, E. K., Narayan, G., Groenen, M. & Madsen, O., 9 Jul 2019, ISAG 2019 Abstracts Book: 37th International Society for Animal Genetics Conference, July 7-12, 2019 - Lleida, Spain. p. 24-25

Research output: Chapter in Book/Report/Conference proceedingAbstract

Suidae
Eurasia
wild boars
history
Sus scrofa
2018

Intestinal stem-cell organoids as experimental models to investigate feed efficiency

Ellen, E. D., Taverne, N., Taverne-Thiele, J. J., Madsen, O., Woelders, H., Bergsma, R., Knol, E. F., Kar, S. K., de Haas, Y., Groenen, M. & Wells, J. M., 28 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 478-478 (Book of Abstracts; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

stem cells
feed conversion
nutrient transport
livestock production
marker-assisted selection
2017

Modifications in liver transcriptomic profile of fattening lambs by early suckled milk intake level

Santos, A., Giraldez, F. J., Groenen, M., Madsen, O., Frutos, J., Valdes, C. & Andres, S., 28 Aug 2017, p. 388.

Research output: Contribution to conferenceAbstractAcademic

milk consumption
transcriptomics
finishing
lambs
liver

The impact of genome editing on the introduction of monogenic traits in livestock

Bastiaansen, J. W. M., Bovenhuis, H., Groenen, M., Megens, H. J. W. C. & Mulder, H. A., 2017, Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 428-428 (Book of abstracts; no. 23).

Research output: Chapter in Book/Report/Conference proceedingAbstract

livestock
genome
marker-assisted selection
selection response
alleles
2016

The copy number variations at genes related to neuronal functions under selection in great tit

da Silva, V., Laine, V. N., Bosse, M., Oers, C. H. J., Gienapp, P., Visser, M. E., Crooijmans, R. P. M. A. & Groenen, M., 4 Feb 2016.

Research output: Contribution to conferenceAbstractAcademic

global warming
genomics
gap junctions
genome
Parus major
2015

Accuracy of genomic prediction using whole genome sequence data in White egg layer chickens

Heidaritabar, M., Calus, M. P. L., Megens, H. J. W. C., Groenen, M. A. M., Vereijken, A. & Bastiaansen, J. W. M., 2015, Book of Abstracts 66th Annual Meeting of the EAAP. Wageningen Academic Publishers, Vol. 21. p. 246

Research output: Chapter in Book/Report/Conference proceedingAbstract

egg albumen
chickens
genomics
genome
prediction

The Functional Annotation of Animal Genomes (FAANG) Initiative

Giuffra, E., Foissac, S., Madsen, O., Groenen, M., Crooijmans, R. P. M. A., Ross, P. J., Korf, I. & Zhou, H., Jan 2015.

Research output: Contribution to conferenceAbstractAcademic

The genomics of avian breeding time - an ecologically relevant trait for adaptation to climate change

Gienapp, P., Calus, M. P. L., Laine, V., van Oers, K., Groenen, M. A. M., Slate, J. & Visser, M. E., 2015.

Research output: Contribution to conferenceAbstractAcademic

breeding season
climate change
genomics
quantitative genetics
quantitative trait loci

The impact of gene flow, standing genetic variations and strong artificial selection during pig domestication

Frantz, L. A. F., Schraiber, J. G., Megens, H. J. W. C., Madsen, O., Battista, V., Larson, I. & Groenen, M., 2015.

Research output: Contribution to conferenceAbstractAcademic

2014

Accuracy of Genomic Breeding Values Predicted Within and Across Breeds in Pig Populations

Hidalgo, A. M., Bastiaansen, J. W. M., Lopes, M. S., Harlizius, B., Groenen, M., de Koning, D. J., Vereijken, A. & Windig, J. J., 2014.

Research output: Contribution to conferenceAbstractAcademic

Domestication with gene-flow in pigs

Frantz, L. A. F., Bosse, M., Megens, H. J. W. C., Madsen, O., Paudel, Y., Crooijmans, R. P. M. A. & Groenen, M., 2014.

Research output: Contribution to conferenceAbstractAcademic

Effects of Isolation and human-mediated introgression in shaping the genomic distinctiveness of an insular large mammal

Iacolina, L., Scandura, M., Goedbloed, D. J., Alexandri, P., Crooijmans, R. P. M. A., Larson, G., Groenen, M. & Megens, H. J. W. C., 2014.

Research output: Contribution to conferenceAbstractAcademic

introgression
mammals
genomics
wild boars
game animals

Effects of peripheral viral infection on hippocampal dna methylation and gene expression patterns in a pig model of cognitive development

Schachtschneider, K. M., Rund, L. A., Madsen, O., Johnson, R. & Groenen, M., 2014.

Research output: Contribution to conferenceAbstractAcademic

FAANG Pilot projects: Comprehensive analysis of RNA-editing in pigs

Madsen, O., Crooijmans, R. P. M. A., Paudel, Y., Frantz, L. A. F., Bosse, M., Megens, H. J. W. C. & Groenen, M., 2014.

Research output: Contribution to conferenceAbstractAcademic

Great tit de novo genome assembly and annotation

Laine, V., van Oers, K., Madsen, O., Megens, H. J. W. C., Verhulst, E. C., Verhoeven, M. T. W., Visser, M. E. & Groenen, M., 2014.

Research output: Contribution to conferenceAbstractAcademic

Pig variomics: understanding the when, where, and why of variation in the genome of Sus scrofa

Megens, H. J. W. C., Bosse, M., Madsen, O., Frantz, L. A. F., Paudel, Y., Herrero-Medrano, J., Crooijmans, R. P. M. A. & Groenen, M., 2014.

Research output: Contribution to conferenceAbstractAcademic

The International Swine Methylome Consortium (ISMC): Supporting Epigenomics and Biomedical research

Schachtschneider, K. M., Rund, L. A., Madsen, O., Johnson, R., Archibald, A. L., Groenen, M. & Schook, L. B., 2014, book of abstracts the 34th International Society for Animal Genetics Conference. p. 189-189

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access
2011

Lines And SINEs In Suids: The Repetitive Genomic Landscape In Sus scrofa And Related Pig Species

Groenen, M. A. M., Megens, H. J. W. C., Crooijmans, R. P. M. A., Madsen, O., Takeuchi, Y., Faulkner, G., Rogel Gaillard, C., Ma, J. & Schook, L. B., 2011.

Research output: Contribution to conferenceAbstractAcademic

Porcine Imprinted Genes Detected Through High-Throughput cDNA-Sequencing (RNA-Seq)

Madsen, O., Crooijmans, R. P. M. A., Rund, L. A., Schook, L. B. & Groenen, M. A. M., 2011.

Research output: Contribution to conferenceAbstractAcademic

sequence analysis
swine
genes
mammals
placenta

Sequencing Multiple Genomes Of The Pig And Other Suids: Insights In Speciation And Selection

Groenen, M. A. M., Megens, H. J. W. C., Crooijmans, R. P. M. A., Madsen, O., Bosse, M., Paudel, Y., Frantz, L. A. F., Ma, J., Cunningham, R. & Schook, L. B., 2011.

Research output: Contribution to conferenceAbstractAcademic

Sequencing Suids: unraveling the genomic variation landscape of Sus scrofa and related species by whole genome sequencing

Megens, H. J. W. C., Madsen, O., Bosse, M., Paudel, Y., Frantz, L. A. F., Semiadi, G., Schook, L. B., Crooijmans, R. P. M. A. & Groenen, M. A. M., 2011.

Research output: Contribution to conferenceAbstractAcademic

2010

Genome-wide assessment of diversity in the pig and other suids

Groenen, M. A. M., Megens, H. J. W. C., Crooijmans, R. P. M. A., Larson, B. A., Muir, W. M., Archibald, A. L., Ma, J. & Schook, L. B., 2010.

Research output: Contribution to conferenceAbstractAcademic

Genome wide SNP detection in the great tit Parus major using high throughput sequencing

van Bers, N. E. M., van Oers, K., Kerstens, H. H. D., Dibbits, B. W., Crooijmans, R. P. M. A., Visser, C. & Groenen, M. A. M., 2010.

Research output: Contribution to conferenceAbstractAcademic

Parus major
genome
genotyping
Tilapia (Cichlidae)
genome assembly

Insights From Whole Genome Sequence Alignment Of The Domestic (Sus scrofa And Javan Warty (Sus verrucosus) Pigs

Groenen, M. A. M., Megens, H. J. W. C., Crooijmans, R. P. M. A., Semiadi, G. & Schook, L. B., 2010, Book of Abstracts of the Plant and Animal Genome XVIII Conference, San Diego, CA, USA, 9-13 Januari 2010. p. w619

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Linkage Disequilibrium, Haplotype Sharing And Prospects For Hapmapping The Chicken Genome

Megens, H. J. W. C., Crooijmans, R. P. M. A., Bastiaansen, J. W. M., Vereijken, A., Cheng, H. H., Muir, W. M. & Groenen, M. A. M., 2010.

Research output: Contribution to conferenceAbstractAcademic

linkage disequilibrium
haplotypes
chickens
genome
chromosomes

The chicken genome: Filling in the gaps

Groenen, M. A. M., Zimin, A., Hillier, L. W., Crooijmans, R. P. M. A., Salzberg, S. & Warren, W., 2010.

Research output: Contribution to conferenceAbstractAcademic

The Porcine HapMap Project: Genome-Wide Assessment Of Nucleotide Diversity, Haplotype Diversity And Footprints Of Selection In The Pig

Groenen, M. A. M., Amaral, A. J., Megens, H. J. W. C., Larson, B. A., Archibald, A. L., Muir, W. M., Malhi, Y., Crooijmans, R. P. M. A., Ferretti, L., Perez-Encizo, M. & Schook, L. B., 2010, Book of Abstracts of the Plant and Animal Genome XVIII Conference, San Diego, California, USA, 9-13 Januari 2010. p. w609

Research output: Chapter in Book/Report/Conference proceedingAbstract

haplotypes
nucleotides
swine
genome
wild boars
2008

A Perl Based Data Mining Workflow For Animal Breeding - From Phenotype To SNP

Megens, H. J. W. C., Crooijmans, R. P. M. A., Harlizius, B., Kollers, S., Mullaart, E., Jungerius, B. J., Kerstens, H. H. D. & Groenen, M. A. M., 2008.

Research output: Contribution to conferenceAbstractAcademic

Open Access
animal breeding
phenotype
genomics
genes
livestock

Comparative analysis and linkage disequilibrium in European and Chinese pig breeds

Amaral, A. J., Megens, H. J. W. C., Heuven, H. C. M., Crooijmans, R. P. M. A. & Groenen, M. A. M., 2008.

Research output: Contribution to conferenceAbstractAcademic

Construction Of A Genetic Map For Detailed Milk Composition QTL Mapping In HF Cattle

Koks, P. D., Visker, M. H. P. W., Schennink, A., van Arendonk, J. A. M., van der Poel, J. J. & Groenen, M. A. M., 2008.

Research output: Contribution to conferenceAbstractAcademic

Open Access
milk composition
sires
quantitative trait loci
physical chromosome mapping
cattle

DGAT1 and SCD1 underlie large genetic variation in composition and unsaturation of milk fat

Schennink, A., Hecks, J. L. M., Visker, M. H. P. W., Bovenhuis, H., van Valenberg, H. J. F., Groenen, M. A. M. & van Arendonk, J. A. M., 2008.

Research output: Contribution to conferenceAbstractAcademic

Genome-Wide Assessment Of World-Wide Poultry Biodiversity

Muir, W. M., Wong, G. K., Zhang, Y., Wang, J., Groenen, M. A. M., Crooijmans, R. P. M. A., Megens, H. J. W. C. & Rattink, A. P., 2008.

Research output: Contribution to conferenceAbstractAcademic

Open Access
poultry
biodiversity
alleles
genome
Standardbred

Global Assessment Of Chicken Variation Using The 18K Chicken SNP Iselect Infinium Assay

van As, P., Crooijmans, R. P. M. A., Megens, H. J. W. C., Hanotte, O., Vereijken, A. & Groenen, M. A. M., 2008.

Research output: Contribution to conferenceAbstractAcademic

Open Access
chickens
genotyping
assays
DNA
Gallus lafayetii

High-resolution comparative FISH mapping on chicken and Japanese quailo lampbrush chromosomes

Zlotina, A., Daks, A., Galkina, S. A., Deryusheva, S., Krasikova, A., Crooijmans, R. P. M. A., Groenen, M. A. M. & Gaginskaya, E., 2008, In : Chromosome Research. 16, 7, p. 1048-1048

Research output: Contribution to journalAbstractAcademic

Chickens
Chromosomes
Coturnix
Centromere
Meiotic Prophase I

High throughput SNP discovery and validation in the pig: towards the development of a high density swine SNP chip

Ramos, P. L., Crooijmans, R. P. M. A., Amaral, A. J., Bendixen, J., Hedegaard, J., Rohrer, G., Smith, C., van Tassel, J., Taylor, M. & Groenen, M. A. M., 2008.

Research output: Contribution to conferenceAbstractAcademic

swine
Pietrain
application coverage
DNA libraries
Duroc

High throughput SNP discovery and validation in the Pig: towards the development of a high density swine SNP chip

Ramos, A., Amaral, A. J., Kerstens, H. H. D., Bendixen, C., Hedegaard, J., Rohrer, G., Smith, T., Tassell, C., Taylor, J. F. & Groenen, M. A. M., 2008.

Research output: Contribution to conferenceAbstractAcademic

swine
Pietrain
application coverage
DNA libraries
Duroc

Identification Of Genes Involved In Milk Composition

Visker, M. H. P. W., Koks, P. D., Schennink, A., van der Poel, J. J., Groenen, M. A. M. & van Arendonk, J. A. M., 2008.

Research output: Contribution to conferenceAbstractAcademic

Open Access
milk composition
milk
cows
genes
sires

Identification Of Porcine And Turkey SNPs By High Parallel Sequencing On A Solexa Sequencing Platform

Crooijmans, R. P. M. A., Kerstens, H. H. D., Amaral, A. J., Veenendaal, A., Dibbits, B. W., Chin-A-Woeng, T. F. C., den Dunnen, J. H. & Groenen, M. A. M., 2008.

Research output: Contribution to conferenceAbstractAcademic

Open Access
Turkey (country)
swine
genome
DNA
genomics

LD In Pigs: Differences Between China And Europe. Plant and Animal Genome XVI

Groenen, M. A. M., Kerstens, H. H. D., Amaral, A. J., Veenendaal, A., Chin-A-Woeng, T. F. C., Dunnen, J. & Crooijmans, R. P. M. A., 2008.

Research output: Contribution to conferenceAbstractAcademic

Open Access
linkage disequilibrium
swine
genome
China
animals