Research output per year
Research output per year
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Dive into the research topics where Marnix Medema is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation
Blin, K., Shaw, S., Vader, L., Szenei, J., Reitz, Z. L., Augustijn, H. E., Cediel-Becerra, J. D. D., de Crecy-Lagard, V., Koetsier, R. A., Williams, S. E., Cruz-Morales, P., Wongwas, S., Segurado Luchsinger, A., Biermann, F., Korenskaia, A., Zdouc, M. M., Meijer, D., Terlouw, B. R., van der Hooft, J. J. J. & Ziemert, N. & 7 others, , 2025, In: Nucleic acids research. 53, W1, p. W32-W38 7 p., gkaf334.Research output: Contribution to journal › Article › Academic › peer-review
Open Access82 Citations (Scopus) -
BGC Atlas: a web resource for exploring the global chemical diversity encoded in bacterial genomes
Bagci, C., Nuhamunada, M., Goyat, H., Ladanyi, C., Sehnal, L., Blin, K., Kautsar, S. A., Tagirdzhanov, A., Gurevich, A., Mantri, S., von Mering, C., Udwary, D., Medema, M. H., Weber, T. & Ziemert, N., 6 Jan 2025, In: Nucleic acids research. 53, D1, p. D618–D624 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access13 Citations (Scopus) -
Breaking into nature's secret medicine cabinet: lichens – a biochemical goldmine ready for discovery
Singh, G., Dal Grande, F., Martin, F. M. & Medema, M. H., Apr 2025, In: New Phytologist. 246, 2, p. 437-449 13 p.Research output: Contribution to journal › Literature review › peer-review
Open Access6 Citations (Scopus) -
Crop root bacterial and viral genomes reveal unexplored species and microbiome patterns
Dai, R., Zhang, J., Liu, F., Xu, H., Qian, J. M., Cheskis, S., Liu, W., Wang, B., Zhu, H., Pronk, L. J. U., Medema, M. H., de Jonge, R., Pieterse, C. M. J., Levy, A., Schlaeppi, K. & Bai, Y., 2025, In: Cell. 188, 9, p. 2521-2539.e22Research output: Contribution to journal › Article › Academic › peer-review
Open Access12 Citations (Scopus) -
Empowering natural product science with AI: leveraging multimodal data and knowledge graphs
Meijer, D., Beniddir, M. A., Coley, C. W., Mejri, Y. M., Ozturk, M., van der Hooft, J. J. J., Medema, M. H. & Skiredj, A., 1 Apr 2025, In: Natural Product Reports. 42, 4, p. 654-662Research output: Contribution to journal › Article › Academic › peer-review
Open Access13 Citations (Scopus)
Datasets
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Data for iPRESTO: automated discovery of biosynthetic sub-clusters linked to specific natural product substructures
Louwen, J. J. R. (Creator), Kautsar, S. A. (Creator), van der Burg, S. (Creator), Medema, M. H. (Creator) & van der Hooft, J. J. J. (Creator), Wageningen University & Research, 2 Aug 2022
Dataset
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Micromonospora sp. RL09-050-HVF-A Genome sequencing and assembly
McCaughey, C. S. (Creator), van Santen, J. A. (Creator), van der Hooft, J. J. J. (Creator), Medema, M. H. (Creator) & Linington, R. G. (Creator), Simon Fraser university, 27 Jul 2021
https://www.ncbi.nlm.nih.gov/bioproject/718589
Dataset
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BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes
Pascal Andreu, V. (Creator), Augustijn, H. (Creator), van den Berg, K. (Creator), van der Hooft, J. (Creator), Fischbach, M. A. (Creator) & Medema, M. (Creator), Wageningen University, 15 Dec 2020
Dataset
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Pre-computed MGCs from human microbiome reference genomes
Andreu, V. P. (Creator), Augustijn, H. E. (Creator), van den Berg, K. (Creator), van der Hooft, J. J. J. (Creator), Fischbach, M. A. (Creator) & Medema, M. H. (Creator), Wageningen University, 26 Oct 2022
Dataset
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Pentapetalae cytochrome P450 mRNA, complete cds.
Wang, Y. (Creator), Durairaj, J. (Creator), Suarez Duran, H. (Creator), van Velzen, R. (Creator), Flokova, K. (Creator), Liao, C. Y. (Creator), Chojnacka, A. (Creator), Macfarlane, S. (Creator), Schranz, E. (Creator), Medema, M. (Creator), van Dijk, A.-J. (Creator), Dong, L. (Creator) & Bouwmeester, H. (Creator), Wageningen University & Research, 1 Jul 2022
https://www.ncbi.nlm.nih.gov/popset/2251331960
Dataset
Press/Media
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Lisianthus grower Richard van der Lugt: ‘Lava filter helping to improve losses’ : filter removes Fusarium from drain water
Paternotte, S. J. & Medema, M.
15/05/25
1 Media contribution
Press/Media: Expert Comment › Professional
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Wat een bacterie in potentie kan, is veel meer dan wat je ziet
30/03/24
1 Media contribution
Press/Media: Research › Popular
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UC-San Diego: Long-reads and powerful algorithms identify 'invisible' microbes
4/01/22
1 item of Media coverage
Press/Media: Research › Popular
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Finding new antibiotics: In 5 steps
4/11/21 → 5/11/21
2 Media contributions
Press/Media: Research › Professional
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Computational design of natural product-derived peptides as GPCR ligands
Xu, Y. (PhD candidate), Medema, M. (Promotor) & Probst, D. (Co-promotor)
1/09/25 → …
Project: PhD
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Unlocking the Hidden Treasures of Aquatic Extremophiles: sustainable development of industrially relevant novel active biomolecules
He, R. (PI) & Medema, M. (PI)
1/09/25 → 1/09/26
Project: PostDoc
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Implicit neural representations of protein-ligand interactions.
Inal, B. (PhD candidate), Medema, M. (Promotor) & Probst, D. (Co-promotor)
15/07/25 → …
Project: PhD
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Revealing drivers of bacteriophage diversity by combining bioinformatics and modelling
de Bruijn, T. (PhD candidate), Medema, M. (Promotor), Zwaan, B. (Promotor), Doekes, H. (Co-promotor) & Kupczok, A. (Co-promotor)
1/11/24 → …
Project: PhD
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Ecosystem within (EcoWhite): Exploring the virome and other microbiome members in whiteflies.
Patiño Medina, L. (PhD candidate), Medema, M. (Promotor), van Oers, M. (Promotor), Bryon, A. (Co-promotor) & Kupczok, A. (Co-promotor)
15/09/24 → …
Project: PhD