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Marnix Medema

dr.

 https://orcid.org/0000-0002-2191-2821
    20112021
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    Fingerprint Dive into the research topics where Marnix Medema is active. These topic labels come from the works of this person. Together they form a unique fingerprint.

    • 24 Similar Researchers
    Multigene Family Medicine & Life Sciences
    Biological Products Medicine & Life Sciences
    Genome Medicine & Life Sciences
    Genes Chemical Compounds
    Bacterial Genomes Medicine & Life Sciences
    Biosynthetic Pathways Medicine & Life Sciences
    Anti-Bacterial Agents Medicine & Life Sciences
    Metabolomics Medicine & Life Sciences

    Network Recent external collaboration on country level. Dive into details by clicking on the dots.

    Research Output 2011 2019

    A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters

    Witjes, L., Kooke, R., Van Der Hooft, J. J. J., De Vos, R. C. H., Keurentjes, J. J. B., Medema, M. H. & Nijveen, H., 2 Apr 2019, In : BMC Research Notes. 12, 1, 194.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    Plant Genes
    Metabolomics
    Multigene Family
    Genes
    Metabolites
    21 Citations (Scopus)

    antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

    Blin, K., Shaw, S., Steinke, K., Villebro, R., Ziemert, N., Lee, S. Y., Medema, M. H. & Weber, T., 2 Jul 2019, In : Nucleic acids research. 47, W1, p. W81-W87

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    Bacterial Genomes
    Multigene Family
    Fungal Genome
    Halogenated Diphenyl Ethers
    Genome
    1 Citation (Scopus)

    Assessing specialized metabolite diversity in the cosmopolitan plant genus Euphorbia l.

    Ernst, M., Nothias, L. F., van der Hooft, J. J. J., Silva, R. R., Saslis-Lagoudakis, H. C., Grace, O. M., Martinez-Swatson, K., Hassemer, G., Funez, L. A., Simonsen, H. T., Medema, M. H., Staerk, D., Nilsson, N., Lovato, P., Dorrestein, P. C. & Rønsted, N., 2 Jul 2019, In : Frontiers in Plant Science. 10, 846.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    Euphorbia
    metabolites
    herbivores
    metabolomics
    Eurasia

    BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

    Meleshko, D., Mohimani, H., Tracanna, V., Hajirasouliha, I., Medema, M. H., Korobeynikov, A. & Pevzner, P. A., 1 Aug 2019, In : Genome Research. 29, 8, p. 1352-1362 11 p.

    Research output: Contribution to journal › Article › Academic › peer-review

    Multigene Family
    Metagenomics
    Genome
    Microbial Genome
    Firearms
    1 Citation (Scopus)

    Comprehensive mass spectrometry-guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae

    Kang, K. B., Ernst, M., van der Hooft, J. J. J., da Silva, R. R., Park, J., Medema, M. H., Sung, S. H. & Dorrestein, P. C., 20 Feb 2019, In : The Plant Journal.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    Rhamnaceae
    Mass Spectrometry
    mass spectrometry
    metabolites
    phenotype

    Projects 2016 2021

    Integrated omics analysis for small molecule-mediated host-microbiome inteeractions (iOMEGA - integrated omics for metabolomics and genomics annotation)

    van der Hooft, J., de Ridder, D. & Medema, M.

    5/05/18 → 30/04/21

    Project: PostDoc

    Algorithms for biosynthetic pathway discovery and analysis in the human microbiome

    Pascal Andreu, V., Medema, M. & de Ridder, D.

    2/01/17 → …

    Project: PhD

    A Computational Framework for the Discovery and Engineering of Biosynthetic Pathways

    Kautsar, S., Medema, M. & de Ridder, D.

    1/09/16 → …

    Project: PhD

    Harnessing the soil microbiome for improved stress tolerance in crop plants

    Tracanna, V., Medema, M. & de Ridder, D.

    15/06/16 → …

    Project: PhD

    A systematic computational genomic analysis of plant secondary metabolic pathways

    Suarez Duran, H., Medema, M. & de Ridder, D.

    1/01/16 → …

    Project: PhD

    Datasets

    CCDC 1535309: Experimental Crystal Structure Determination

    Huang, A. C. (Creator), Kautsar, S. (Creator), Hong, Y. J. (Creator), Medema, M. (Creator), Bond, A. D. (Creator), Tantillo, D. J. (Creator), Osbourn, A. (Creator), 28 Feb 2017

    DOI: 10.5517/ccdc.csd.cc1njm3x

    Dataset

    CCDC 1535308: Experimental Crystal Structure Determination

    Huang, A. C. (Creator), Kautsar, S. (Creator), Hong, Y. J. (Creator), Medema, M. (Creator), Bond, A. D. (Creator), Tantillo, D. J. (Creator), Osbourn, A. (Creator), 28 Feb 2017

    DOI: 10.5517/ccdc.csd.cc1njm2w

    Dataset

    CCDC 1535306: Experimental Crystal Structure Determination

    Huang, A. C. (Creator), Kautsar, S. (Creator), Hong, Y. J. (Creator), Medema, M. (Creator), Bond, A. D. (Creator), Tantillo, D. J. (Creator), Osbourn, A. (Creator), 28 Feb 2017

    DOI: 10.5517/ccdc.csd.cc1njm0t

    Dataset

    CCDC 1539192: Experimental Crystal Structure Determination

    Huang, A. C. (Creator), Kautsar, S. (Creator), Hong, Y. J. (Creator), Medema, M. (Creator), Bond, A. D. (Creator), Tantillo, D. J. (Creator), Osbourn, A. (Creator), 20 Mar 2017

    DOI: 10.5517/ccdc.csd.cc1nnncb

    Dataset

    CCDC 1539193: Experimental Crystal Structure Determination

    Huang, A. C. (Creator), Kautsar, S. (Creator), Hong, Y. J. (Creator), Medema, M. (Creator), Bond, A. D. (Creator), Tantillo, D. J. (Creator), Osbourn, A. (Creator), 20 Mar 2017

    DOI: 10.5517/ccdc.csd.cc1nnndc

    Dataset