Research output per year
Research output per year
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Dive into the research topics where Marnix Medema is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Convergent evolution for antibiotic biosynthesis in bacteria and animals
Papon, N., Courdavault, V. & Medema, M. H., Apr 2023, In: Trends in Genetics. 39, 4, p. 237-239Research output: Contribution to journal › Short survey › peer-review
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Enhanced correlation-based linking of biosynthetic gene clusters to their metabolic products through chemical class matching
Louwen, J. J. R., Medema, M. H. & van der Hooft, J. J. J., 23 Jan 2023, In: Microbiome. 11, 1, 12 p., 13.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
Exploring the Interspecific Interactions and the Metabolome of the Soil Isolate Hylemonella gracilis
Tyc, O., Kulkarni, P., Ossowicki, A., Tracanna, V., Medema, M. H., van Baarlen, P., van IJcken, W. F. J., Verhoeven, K. J. F. & Garbeva, P., 23 Feb 2023, In: mSystems. 8, 1, 21 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota
Pascal Andreu, V., Augustijn, H. E., Chen, L., Zhernakova, A., Fu, J., Fischbach, M. A., Dodd, D. & Medema, M. H., 13 Feb 2023, In: Nature Biotechnology.Research output: Contribution to journal › Article › Academic › peer-review
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iPRESTO: Automated discovery of biosynthetic sub-clusters linked to specific natural product substructures
Louwen, J. J. R., Kautsar, S. A., van der Burg, S., Medema, M. H. & van der Hooft, J. J. J., 9 Feb 2023, In: PLoS Computational Biology. 19, 2, p. e1010462Research output: Contribution to journal › Article › Academic › peer-review
Open Access
Datasets
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Genome-based exploration of the specialized metabolic capacities of the genus Rhodococcus
Ceniceros, A. (Creator), Dijkhuizen, L. (Creator), Petrusma, M. (Creator) & Medema, M. (Creator), University of Groningen, 9 Aug 2017
DOI: 10.6084/m9.figshare.c.3849541
Dataset
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BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes
Pascal Andreu, V. (Creator), Augustijn, H. (Creator), van den Berg, K. (Creator), van der Hooft, J. (Creator), Fischbach, M. A. (Creator) & Medema, M. (Creator), Wageningen University, 15 Dec 2020
Dataset
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Rothia nasimurium strain:PT-32 Genome sequencing and assembly
Gaiser, R. A. (Creator), Medema, M. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University, 3 Sep 2016
http://www.ebi.ac.uk/ena/data/view/PRJNA321506
Dataset
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Pre-computed MGCs from human microbiome reference genomes
Andreu, V. P. (Creator), Augustijn, H. (Creator), van den Berg, K. (Creator), van der Hooft, J. (Creator), Fischbach, M. A. (Creator) & Medema, M. (Creator), Wageningen University, 26 Oct 2022
Dataset
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Data underlying the publication: "A mammalian commensal of the oropharyngeal cavity produces antibiotic and antiviral valinomycin in vivo"
Gaiser, R. (Creator), Ferrando, L. (Creator), Oddo, A. (Creator), Pereira, M. (Creator), Boekhorst, J. (Creator), Guan, X. (Creator), Molist, F. (Creator), Fernandez Gutierrez, M. (Creator), Fredriksen, S. (Creator), Bryant, C. E. (Creator), Petras, D. (Creator), Dorrestein, P. C. (Creator), Boeren, S. (Creator), Medema, M. (Creator), Hill, C. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 28 Sep 2023
Dataset
Press/Media
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UC-San Diego: Long-reads and powerful algorithms identify 'invisible' microbes
4/01/22
1 item of Media coverage
Press/Media: Research › Popular
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Finding new antibiotics: In 5 steps
4/11/21 → 5/11/21
2 Media contributions
Press/Media: Research › Professional
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Software speeds up search for new antibiotics
5/12/19
2 Media contributions
Press/Media: Research › Other
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Integrative genome/metabolome mining for marine natural products
Zdouc, M., Medema, M. & van der Hooft, J.
1/02/22 → 1/02/24
Project: PostDoc
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Deciphering plant-microbiome communication for sustainable crop production
Li, Y., Medema, M. & Mommer, L.
1/12/21 → …
Project: PhD
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Meta'omic analysis of sponge microbiota.
Hrab, P., Medema, M., Sipkema, D., de Ridder, D. & Schorn, M.
1/12/21 → …
Project: PhD