Marnix Medema

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Assistant Professor, Bioinformatics

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67 Article
2 Comment/Letter to the editor
1 Chapter
1 Abstract
More
- 1 Letter

BiG-FAM: the biosynthetic gene cluster families database
Kautsar, S. A., Blin, K., Shaw, S., Weber, T. & Medema, M. H., 8 Jan 2021, In : Nucleic acids research. 49, D1, p. D490-D497
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
4 Citations (Scopus)
BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters
Kautsar, S. A., van der Hooft, J. J. J., de Ridder, D. & Medema, M. H., 13 Jan 2021, In : GigaScience. 10, 1
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
Extracting the GEMs: Genotype, Environment, and Microbiome Interactions Shaping Host Phenotypes
Oyserman, B. O., Cordovez, V., Flores, S. S., Leite, M. F. A., Nijveen, H., Medema, M. H. & Raaijmakers, J. M., 12 Jan 2021, In : Frontiers in Microbiology. 11, 574053.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
Omics-based strategies to discover novel classes of RiPP natural products
Kloosterman, A. M., Medema, M. H. & van Wezel, G. P., Jun 2021, In : Current Opinion in Biotechnology. 69, p. 60-67 8 p.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes
Blin, K., Shaw, S., Kautsar, S. A., Medema, M. H. & Weber, T., 8 Jan 2021, In : Nucleic acids research. 49, D1, p. D639-D643
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
1 Citation (Scopus)

Genome-based exploration of the specialized metabolic capacities of the genus Rhodococcus
Ceniceros, A. (Creator), Dijkhuizen, L. (Creator), Petrusma, M. (Creator) & Medema, M. (Creator), University of Groningen, 9 Aug 2017
DOI: 10.6084/m9.figshare.c.3849541
Dataset
Rothia nasimurium strain:PT-32 Genome sequencing and assembly
Gaiser, R. A. (Creator), Medema, M. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University, 3 Sep 2016
http://www.ebi.ac.uk/ena/data/view/PRJNA321506
Dataset
Data from: Assessing specialized metabolite diversity in the cosmopolitan plant genus Euphorbia L.
Ernst, M. (Creator), Nothias, L. F. (Creator), van der Hooft, J. (Creator), Silva, R. R. (Creator), Saslis-Lagoudakis, C. H. (Creator), Grace, O. M. (Creator), Martinez-Swatson, K. (Creator), Hassemer, G. (Creator), Funez, L. A. (Creator), Simonsen, H. T. (Creator), Medema, M. (Creator), Staerk, D. (Creator), Nilsson, N. (Creator), Lovato, P. (Creator), Dorrestein, P. C. (Creator) & Rønsted, N. (Creator), 17 Jul 2019
DOI: 10.5061/dryad.t513409
Dataset
CCDC 1535306: Experimental Crystal Structure Determination
Huang, A. C. (Creator), Kautsar, S. (Creator), Hong, Y. J. (Creator), Medema, M. (Creator), Bond, A. D. (Creator), Tantillo, D. J. (Creator) & Osbourn, A. (Creator), 28 Feb 2017
DOI: 10.5517/ccdc.csd.cc1njm0t
Dataset
CCDC 1539192: Experimental Crystal Structure Determination
Huang, A. C. (Creator), Kautsar, S. (Creator), Hong, Y. J. (Creator), Medema, M. (Creator), Bond, A. D. (Creator), Tantillo, D. J. (Creator) & Osbourn, A. (Creator), 20 Mar 2017
DOI: 10.5517/ccdc.csd.cc1nnncb
Dataset

Software speeds up search for new antibiotics
Marnix Medema
5/12/19
2 Media contributions
Press/Media: Research › Other

3 Finished
5 Active

In pursuit of next-generation lipopeptide antibiotics
Terlouw, B., Medema, M. & de Ridder, D.
1/07/18 → …
Project: PhD
Integrated omics analysis for small molecule-mediated host-microbiome inteeractions (iOMEGA - integrated omics for metabolomics and genomics annotation)
van der Hooft, J., de Ridder, D. & Medema, M.
5/05/18 → 30/04/21
Project: PostDoc
Algorithms for biosynthetic pathway discovery and analysis in the human microbiome
Pascal Andreu, V., Medema, M. & de Ridder, D.
2/01/17 → …
Project: PhD
A Computational Framework for the Discovery and Engineering of Biosynthetic Pathways
Kautsar, S., Medema, M. & de Ridder, D.
1/09/16 → …
Project: PhD
Harnessing the soil microbiome for improved stress tolerance in crop plants
Tracanna, V., Medema, M. & de Ridder, D.
15/06/16 → …
Project: PhD