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Marnix Medema

dr.

 https://orcid.org/0000-0002-2191-2821
    20112021
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    Fingerprint Dive into the research topics where Marnix Medema is active. These topic labels come from the works of this person. Together they form a unique fingerprint.

    • 20 Similar Researchers
    Multigene Family Medicine & Life Sciences
    Biological Products Medicine & Life Sciences
    Genome Medicine & Life Sciences
    Genes Chemical Compounds
    Bacterial Genomes Medicine & Life Sciences
    Biosynthetic Pathways Medicine & Life Sciences
    Anti-Bacterial Agents Medicine & Life Sciences
    Microbial Genome Medicine & Life Sciences

    Network Recent external collaboration on country level. Dive into details by clicking on the dots.

    Research Output 2011 2019

    A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters

    Witjes, L., Kooke, R., Van Der Hooft, J. J. J., De Vos, R. C. H., Keurentjes, J. J. B., Medema, M. H. & Nijveen, H., 2 Apr 2019, In : BMC Research Notes. 12, 1, 194.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    Plant Genes
    Metabolomics
    Multigene Family
    Genes
    Metabolites
    6 Citations (Scopus)

    antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

    Blin, K., Shaw, S., Steinke, K., Villebro, R., Ziemert, N., Lee, S. Y., Medema, M. H. & Weber, T., 2 Jul 2019, In : Nucleic acids research. 47, W1, p. W81-W87

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    Bacterial Genomes
    Multigene Family
    Fungal Genome
    Halogenated Diphenyl Ethers
    Genome

    Assessing specialized metabolite diversity in the cosmopolitan plant genus Euphorbia l.

    Ernst, M., Nothias, L. F., van der Hooft, J. J. J., Silva, R. R., Saslis-Lagoudakis, H. C., Grace, O. M., Martinez-Swatson, K., Hassemer, G., Funez, L. A., Simonsen, H. T., Medema, M. H., Staerk, D., Nilsson, N., Lovato, P., Dorrestein, P. C. & Rønsted, N., 2 Jul 2019, In : Frontiers in Plant Science. 10, 846.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    Euphorbia
    metabolites
    herbivores
    metabolomics
    Eurasia

    Comprehensive mass spectrometry-guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae

    Kang, K. B., Ernst, M., van der Hooft, J. J. J., da Silva, R. R., Park, J., Medema, M. H., Sung, S. H. & Dorrestein, P. C., 20 Feb 2019, In : The Plant Journal.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    Rhamnaceae
    Mass Spectrometry
    mass spectrometry
    metabolites
    phenotype

    Molnetenhancer: Enhanced molecular networks by integrating metabolome mining and annotation tools

    Ernst, M., Kang, K. B., Caraballo-Rodríguez, A. M., Nothias, L. F., Wandy, J., Chen, C., Wang, M., Rogers, S., Medema, M. H., Dorrestein, P. C. & van der Hooft, J. J. J., 16 Jul 2019, In : Metabolites. 9, 7, 144.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    Metabolomics
    Metabolome
    Computer Simulation
    Workflow
    Mass Spectrometry

    Projects 2016 2021

    Integrated omics analysis for small molecule-mediated host-microbiome inteeractions (iOMEGA - integrated omics for metabolomics and genomics annotation)

    van der Hooft, J., de Ridder, D. & Medema, M.

    5/05/18 → 30/04/21

    Project: PostDoc

    Novel approaches to combine large-scale metabolomics and genomics data

    van der Hooft, J. & Medema, M.

    15/09/17 → 15/09/19

    Project: PostDoc

    File

    Novel approaches to combine large-scale metabolomics and genomics data

    van der Hooft, J., Medema, M. & Dorrestein, P. C.

    15/09/17 → 14/09/19

    Project: PostDoc

    Algorithms for biosynthetic pathway discovery and analysis in the human microbiome

    Pascal Andreu, V., Medema, M. & de Ridder, D.

    2/01/17 → …

    Project: PhD

    A Computational Framework for the Discovery and Engineering of Biosynthetic Pathways

    Kautsar, S., Medema, M. & de Ridder, D.

    1/09/16 → …

    Project: PhD

    Datasets

    CCDC 1535309: Experimental Crystal Structure Determination

    Huang, A. C. (Creator), Kautsar, S. (Creator), Hong, Y. J. (Creator), Medema, M. (Creator), Bond, A. D. (Creator), Tantillo, D. J. (Creator), Osbourn, A. (Creator), 28 Feb 2017

    DOI: 10.5517/ccdc.csd.cc1njm3x

    Dataset

    CCDC 1535307: Experimental Crystal Structure Determination

    Huang, A. C. (Creator), Kautsar, S. (Creator), Hong, Y. J. (Creator), Medema, M. (Creator), Bond, A. D. (Creator), Tantillo, D. J. (Creator), Osbourn, A. (Creator), 28 Feb 2017

    DOI: 10.5517/ccdc.csd.cc1njm1v

    Dataset

    Genome-based exploration of the specialized metabolic capacities of the genus Rhodococcus

    Ceniceros, A. (Creator), Dijkhuizen, L. (Creator), Petrusma, M. (Creator), Medema, M. (Creator), University of Groningen, 9 Aug 2017

    DOI: 10.6084/m9.figshare.c.3849541

    Dataset

    Rothia nasimurium strain:PT-32 Genome sequencing and assembly

    Gaiser, R. A. (Creator), Medema, M. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator), Wells, J. (Creator), Wageningen University, 3 Sep 2016

    http://www.ebi.ac.uk/ena/data/view/PRJNA321506

    Dataset

    CCDC 1535308: Experimental Crystal Structure Determination

    Huang, A. C. (Creator), Kautsar, S. (Creator), Hong, Y. J. (Creator), Medema, M. (Creator), Bond, A. D. (Creator), Tantillo, D. J. (Creator), Osbourn, A. (Creator), 28 Feb 2017

    DOI: 10.5517/ccdc.csd.cc1njm2w

    Dataset