1977 …2020
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Research Output 1977 2020

2020

Reciprocal cybrids reveal how organellar genomes affect plant phenotypes

Flood, P. J., Theeuwen, T. P. J. M., Schneeberger, K., Keizer, P., Kruijer, W., Severing, E., Kouklas, E., Hageman, J. A., Wijfjes, R., Calvo-Baltanas, V., Becker, F. F. M., Schnabel, S. K., Willems, L. A. J., Ligterink, W., Van Arkel, J., Mumm, R., Gualberto, J. M., Savage, L., Kramer, D. M., Keurentjes, J. J. B. & 5 others, Van Eeuwijk, F., Koornneef, M., Harbinson, J., Aarts, M. G. M. & Wijnker, E., 1 Jan 2020, In : Nature Plants. 6, 1, p. 13-21

Research output: Contribution to journalArticleAcademicpeer-review

cybrids
phenotype
haploidy
genome
chloroplast DNA
2019

QTL and candidate genes associated with leaf anion concentrations in response to phosphate supply in Arabidopsis thaliana

El-Soda, M., Neris Moreira, C., Goredema-Matongera, N., Jamar, D., Koornneef, M. & Aarts, M. G. M., 18 Sep 2019, In : BMC Plant Biology. 19, 1, 410.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
anions
quantitative trait loci
Arabidopsis thaliana
phosphates
sulfates
2018
2 Citations (Scopus)

Genes for seed longevity in barley identified by genomic analysis on near isogenic lines

Wozny, D., Kramer, K., Finkemeier, I., Acosta, I. F. & Koornneef, M., 1 Aug 2018, In : Plant Cell and Environment. 41, 8, p. 1895-1911

Research output: Contribution to journalArticleAcademicpeer-review

isogenic lines
Hordeum
Glycosyltransferases
glycosyltransferases
Uridine Diphosphate
6 Citations (Scopus)

Madeiran Arabidopsis thaliana reveals ancient long-range colonization and clarifies demography in Eurasia

Fulgione, A., Koornneef, M., Roux, F., Hermisson, J. & Hancock, A. M., 1 Mar 2018, In : Molecular Biology and Evolution. 35, 3, p. 564-574

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Eurasia
demography
Arabidopsis
Islands
colonization
7 Citations (Scopus)

Mutations in EID1 and LNK2 caused light-conditional clock deceleration during tomato domestication

Müller, N. A., Zhang, L., Koornneef, M. & Jiménez-Gómez, J. M., 3 Jul 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 27, p. 7135-7140

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
domestication
tomatoes
mutation
circadian rhythm
Solanum lycopersicum
2017
13 Citations (Scopus)

Fine mapping of a major QTL for awn length in barley using a multiparent mapping population

Liller, C. B., Walla, A., Boer, M. P., Hedley, P., Macaulay, M., Effgen, S., von Korff, M., van Esse, G. W. & Koornneef, M., 2017, In : Theoretical and Applied Genetics. 130, 2, p. 269-281

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Quantitative Trait Loci
Hordeum
quantitative trait loci
barley
isogenic lines
2 Citations (Scopus)

Quantitative trait loci controlling leaf venation in Arabidopsis

Rishmawi, L., Bühler, J., Jaegle, B., Hülskamp, M. & Koornneef, M., 2017, In : Plant, Cell & Environment. 40, 8, p. 1429-1441

Research output: Contribution to journalArticleAcademicpeer-review

Quantitative Trait Loci
plant veins
Arabidopsis
Veins
quantitative trait loci
18 Citations (Scopus)

Six-rowed spike3 (VRS3) is a histone demethylase that controls lateral spikelet development in Barley

van Esse, G. W., Walla, A., Finke, A., Koornneef, M., Pecinka, A. & Von Korff, M., 2017, In : Plant Physiology. 174, 4, p. 2397-2408

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Histone Demethylases
Hordeum
histones
inflorescences
barley
2016
51 Citations (Scopus)

Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms

Zapata, L., Ding, J., Willing, E. M., Hartwig, B., Bezdan, D., Jiao, W. B., Patel, V., James, G. V., Koornneef, M., Ossowski, S. & Schneeberger, K., 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 28, p. E4052-E4060

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
inversion polymorphism
Arabidopsis thaliana
chromosomes
genome
transposition (genetics)
26 Citations (Scopus)

Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana

Fransz, P., Linc, G., Lee, C. R., Aflitos, S. A., Lasky, J. R., Toomajian, C., Ali, H., Peters, J., van Dam, P., Ji, X., Kuzak, M., Gerats, T., Schubert, I., Schneeberger, K., Colot, V., Martienssen, R., Koornneef, M., Nordborg, M., Juenger, T. E., de Jong, H. & 1 others, Schranz, E., 2016, In : The Plant Journal. 88, 2, p. 159-178

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
paracentric inversion
Arabidopsis
molecular genetics
Haplotypes
Molecular Biology
2015
17 Citations (Scopus)

Mutations in barley row type genes have pleiotropic effects on shoot branching

Liller, C. B., Neuhaus, R., Von Korff, M., Koornneef, M. & Van Esse, W., 2015, In : PLoS ONE. 10, 10, 20 p., e0140246.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genetic Pleiotropy
Hordeum
Seed
branching
Seeds
12 Citations (Scopus)
Open Access
Anthocyanins
anthocyanins
Light
loci
Temperature
23 Citations (Scopus)

Quantitative trait loci and candidate genes underlying genotype by environment interaction in the response of Arabidopsis thaliana to drought

El-Soda, M., Kruijer, W., Malosetti, M., Koornneef, M. & Aarts, M. G. M., 2015, In : Plant, Cell & Environment. 38, 3, p. 585-599

Research output: Contribution to journalArticleAcademicpeer-review

Quantitative Trait Loci
Droughts
Arabidopsis
quantitative trait loci
Arabidopsis thaliana
2014
12 Citations (Scopus)

Conserved histidine of metal transporter AtNRAMP1 is crucial for optimal plant growth under manganese deficiency at chilling temperatures

Ihnatowicz, A., Siwinska, J., Meharg, A. A., Carey, M., Koornneef, M. & Reymond, M., 2014, In : New Phytologist. 202, 4, p. 1173-1183

Research output: Contribution to journalArticleAcademicpeer-review

Manganese
histidine
Histidine
manganese
transporters
17 Citations (Scopus)
Brassica rapa
genotype-environment interaction
Droughts
Quantitative Trait Loci
quantitative trait loci
102 Citations (Scopus)

Genotype x environment interaction QTL mapping in plants: lessons from Arabidopsis

El-Soda, M., Malosetti, M., Zwaan, B. J., Koornneef, M. & Aarts, M. G. M., 2014, In : Trends in Plant Science. 19, 6, p. 390-398

Research output: Contribution to journalArticleAcademicpeer-review

quantitative trait loci
Arabidopsis
botanical composition
genotype
plant breeding
2013

Arabidopsis in Wageningen

Koornneef, M., 2013, Wageningen: Wageningen University, Wageningen UR. 13 p.

Research output: Book/ReportInaugural speechPopular

Open Access
Arabidopsis
plant biology
plant development
physiology
Arabidopsis thaliana
45 Citations (Scopus)

Arabidopsis semidwarfs evolved from independent mutations in GA20ox1, ortholog to green revolution dwarf alleles in rice and barley

Barboza, L., Effgen, S., Alonso-Blanco, C., Kooke, R., Keurentjes, J. J. B. & Koornneef, M., 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 39, p. 15818-15823

Research output: Contribution to journalArticleAcademicpeer-review

barley
Arabidopsis
alleles
mutation
rice
71 Citations (Scopus)

Co-Variation between Seed dormancy, growth rate and flowering time changes with latitude in Arabidopsis thaliana

Debieu, M., Tang, C., Stich, B., Sikosek, T., Effgen, S., Josephs, E., Schmitt, J., Nordborg, M., Koornneef, M. & De Meaux, J., 2013, In : PLoS ONE. 8, 5, e61075.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Plant Dormancy
seed dormancy
Arabidopsis
Seed
Arabidopsis thaliana
21 Citations (Scopus)

Multiple loci and genetic interactions involving flowering time genes regulate stem branching among natural variants of Arabidopsis

Huang, X., Ding, J., Effgen, S., Turck, F. & Koornneef, M., 2013, In : New Phytologist. 199, 3, p. 843-857

Research output: Contribution to journalArticleAcademicpeer-review

Genetic Loci
Arabidopsis
branching
flowering
loci

My favourite flowering image

Koornneef, M., 2013, In : Journal of Experimental Botany. 64, 18, p. 5801-5803

Research output: Contribution to journalEditorialAcademicpeer-review

flowering
Arabidopsis
Research
58 Citations (Scopus)

Paths to selection on life history loci in different natural environments across the native range of Arabidopsis thaliana

Fournier-Level, A., Wilczek, A. M., Cooper, M. D., Roe, J. L., Anderson, J., Eaton, D., Moyers, B. T., Petipas, R. H., Schaeffer, R. N., Pieper, B., Reymond, M., Koornneef, M., Welch, S. M., Remington, D. L. & Schmitt, J., 2013, In : Molecular Ecology. 22, 13, p. 3552-3566

Research output: Contribution to journalArticleAcademicpeer-review

Quantitative Trait Loci
Arabidopsis
quantitative trait loci
life history
Arabidopsis thaliana
101 Citations (Scopus)

The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana

Wijnker, T. G., Velikkakam James, G., Ding, J., Becker, F. F. M., Klasen, J. R., Rawat, V., Rowan, B. A., Jong, de, D. F., Snoo, de, C. B., Zapata, L., de Jong, H., Ossowski, S., Weigel, D., Koornneef, M., Keurentjes, J. J. B. & Schneeberger, K., 2013, In : eLife. 2, e01426.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Conversion
Arabidopsis
Genetic Recombination
Genes
Genetic Linkage
2012
23 Citations (Scopus)

Epistatic natural allelic variation reveals a function of AGAMOUS-LIKE6 in axillary bud formation in Arabidopsis

Huang, X., Effgen, S., Meyer, R. C., Theres, K. & Koornneef, M., 2012, In : The Plant Cell. 24, 6, p. 2364-2379

Research output: Contribution to journalArticleAcademicpeer-review

Arabidopsis
buds
Alleles
flowering
alleles
17 Citations (Scopus)

Genetic analysis of morphological traits in a new, versatile, rapid-cycling Brassica rapa recombinant inbred line population

Bagheri, H., El-Soda, M., van Oorschot, I., Hanhart, C. J., Bonnema, A. B., Jansen-van den Bosch, T., Mank, R., Keurentjes, J. J. B., Meng, L., Wu, J., Koornneef, M. & Aarts, M. G. M., 16 Aug 2012, In : Frontiers in Plant Science. 3, 12 p., 183.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassica rapa
inbred lines
genetic techniques and protocols
quantitative trait loci
Brassica rapa subsp. trilocularis
7 Citations (Scopus)

Signals of speciation within Arabidopsis thaliana in comparison with its relatives

Alcazar, R., Pecinka, A., Aarts, M. G. M., Fransz, P. F. & Koornneef, M., 2012, In : Current Opinion in Plant Biology. 15, 2, p. 205-211

Research output: Contribution to journalArticleAcademicpeer-review

Arabidopsis thaliana
Arabidopsis
reproductive isolation
molecular genetics
hybridization
2011
14 Citations (Scopus)

A comparison of population types used for QTL mapping in Arabidopsis thaliana

Keurentjes, J. J. B., Willems, W., van Eeuwijk, F. A., Nordborg, M. & Koornneef, M., 2011, In : Plant genetic resources: characterization and utilization. 9, 2, p. 185-188

Research output: Contribution to journalArticleAcademicpeer-review

Arabidopsis
quantitative trait loci
Arabidopsis thaliana
Genome
genome
90 Citations (Scopus)
Open Access
inbred lines
quantitative trait loci
Arabidopsis
heterozygosity
Arabidopsis thaliana
86 Citations (Scopus)

DOG1 expression is predicted by the seed-maturation envornment and contributes to geographical variation in germination in Arabidopsis thaliana

Chiang, G. C. K., Bartsch, M., Barua, D., Nakabayashi, K., Debieu, M., Kronholm, I., Koornneef, M., Soppe, W. J. J., Donohue, K. & De Meaux, J., 2011, In : Molecular Ecology. 20, 16, p. 3336-3349

Research output: Contribution to journalArticleAcademicpeer-review

seed maturation
Germination
geographical variation
Arabidopsis
maturation
2 Citations (Scopus)

Identification and characterization of quantitative trait loci that control seed dormancy in Arabidopsis

Bentsink, L. & Koornneef, M., 2011, Seed dormancy: Methods and Protocols in Molecular Biology. Kermode, A. R. (ed.). p. 165-184 431 p. (Methods in Molecular Biology; no. 773).

Research output: Chapter in Book/Report/Conference proceedingChapter

seed dormancy
quantitative trait loci
Arabidopsis
Arabidopsis thaliana
quantitative traits

Natural variation in Arabidopsis thaliana

Koornneef, M., Reymond, M. & Alonso-Blanco, C., 2011, Genetics and Geneomics of the Brassicaceae. Schmidt, R. & Bancroft, I. (eds.). p. 123-151 677 p. (Plant Genetics and Genomics: Crop and Models; no. 9).

Research output: Chapter in Book/Report/Conference proceedingChapter

69 Citations (Scopus)

Seed maturation in Arabidopsis is characterised by nuclear size reduction and increased chromatin condensation

van Zanten, M., Koini, M. A., Geyer, R., Liu, Y., Brambilla, V., Bartels, D., Koornneef, M., Fransz, P. & Soppe, W. J. J., 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 50, p. 20219-20224

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
seed maturation
chromatin
Arabidopsis
seeds
desiccation (plant physiology)
12 Citations (Scopus)

Variation in seed dormancy quantitative trait loci in Arabidopsis thaliana originating from one site

Silady, R. A., Effgen, S., Koornneef, M. & Reymond, M., 2011, In : PLoS ONE. 6, 6 p., e20886.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Plant Dormancy
Quantitative Trait Loci
seed dormancy
Arabidopsis
Seed
2010
67 Citations (Scopus)

Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions

Alcazar, R., Garcia, A. V., Kronholm, I., De Meaux, J., Koornneef, M., Parker, J. E. & Reymond, M., 2010, In : Nature Genetics. 42, p. 1135-1139

Research output: Contribution to journalArticleAcademicpeer-review

Arabidopsis
Phosphotransferases
Alleles
Central Asia
Reproductive Isolation
129 Citations (Scopus)

Natural variation for seed dormancy in Arabidopsis is regulated by additive genetic and molecular pathways

Bentsink, L., Hanson, J., Hanhart, C. J., Blankestijn-de Vries, M. H. C., Coltrane, C., Keizer, P., El-Lithy, M. E. M., Alonso-Blanco, C., de Andres, M. T., Reymond, M., van Eeuwijk, F. A., Smeekens, S. & Koornneef, M., 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 9, p. 4264-4269

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
seed dormancy
Arabidopsis
isogenic lines
germination
quantitative trait loci
22 Citations (Scopus)

Relation among plant growth, carbohydrates and flowering time in the Landsberg erecta x Kondara recombinant inbred line population

El-Lithy, M. E., Reymond, M., Stich, B., Koornneef, M. & Vreugdenhil, D., 2010, In : Plant, Cell & Environment. 33, p. 1369-1382

Research output: Contribution to journalArticleAcademicpeer-review

inbred lines
quantitative trait loci
Carbohydrates
plant growth
carbohydrates
73 Citations (Scopus)

The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis.

Sugliani, M., Brambilla, V., Clerkx, E. J. M., Koornneef, M. & Soppe, W. J. J., 2010, In : The Plant Cell. 22, p. 1936-1946

Research output: Contribution to journalArticleAcademicpeer-review

Abscisic Acid
alternative splicing
Alternative Splicing
Arabidopsis
abscisic acid
205 Citations (Scopus)

The development of Arabidopsis as a plant model

Koornneef, M. & Meinke, D. W., 2010, In : The Plant Journal. 61, p. 909-921

Research output: Contribution to journalArticleAcademicpeer-review

Arabidopsis
plant biology
reference standards
organisms
molecular biology
112 Citations (Scopus)

The earliest stages of adaptation in an experimental plant population: strong selection on QTLs for seed dormancy.

Huang, X., Schmitt, J., Dorn, L., Griffith, C., Effgen, S., Takao, S., Koornneef, M. & Donohue, K., 2010, In : Molecular Ecology. 19, p. 1335-1351

Research output: Contribution to journalArticleAcademicpeer-review

Plant Dormancy
seed dormancy
Quantitative Trait Loci
quantitative trait loci
Germination
38 Citations (Scopus)

Variations in constitutive and inducible UV-B tolerance; dissecting photosystem II protection in Arabidopsis thaliana accessions

Jansen, M. A. K., LeMartret, B. & Koornneef, M., 2010, In : Physiologia Plantarum. 138, 1, p. 22-34

Research output: Contribution to journalArticleAcademicpeer-review

Photosystem II Protein Complex
Arabidopsis
photosystem II
ultraviolet radiation
Arabidopsis thaliana
2009
56 Citations (Scopus)

A strong effect of growth medium and organ type on the identification of QTLs for phytate and mineral concentrations in three Arabidopsis thaliana RIL populations

Ghandilyan, A., Ilk, N., Hanhart, C. J., Mbengue, M., Barboza, L., Schat, H., Koornneef, M., El-Lithy, M. E. M., Vreugdenhil, D., Reymond, M. & Aarts, M. G. M., 2009, In : Journal of Experimental Botany. 60, 5, p. 1409-1425

Research output: Contribution to journalArticleAcademicpeer-review

Phytic Acid
Quantitative Trait Loci
phytic acid
Arabidopsis
mineral content
32 Citations (Scopus)

Genetic analysis identifies quantitative trait loci controlling rosette mineral concentrations in Arabidopsis thaliana under drought

Ghandilyan, A., Barboza, L., Tisne, S., Granier, C., Reymond, M., Koornneef, M., Schat, H. & Aarts, M. G. M., 2009, In : New Phytologist. 184, 1, p. 180-192

Research output: Contribution to journalArticleAcademicpeer-review

Quantitative Trait Loci
Droughts
Arabidopsis
mineral content
Minerals
27 Citations (Scopus)

Natural modifiers of seed longevity in the Arabidopsis mutants abscisic acid insensitive3-5 (abi3-5) and leafy cotyledon1-3 (lec1-3)

Sugliani, M. R. L., Rajjou, L., Clerkx, E. J. M., Koornneef, M. & Soppe, W. J. J., 2009, In : New Phytologist. 184, 4, p. 898-908

Research output: Contribution to journalArticleAcademicpeer-review

Abscisic Acid
Arabidopsis
abscisic acid
Seeds
mutants
166 Citations (Scopus)

System-wide molecular evidence for phenotypic buffering in Arabidopsis

Fu, J., Keurentjes, J. J. B., Bouwmeester, H. J., America, T., Verstappen, F., Ward, J. L., Beale, M. H., de Vos, C. H., Dijkstra, M., Scheltema, R. A., Johannes, F., Koornneef, M., Vreugdenhil, D., Breitling, R. & Jansen, R. C., 2009, In : Nature Genetics. 41, 2, p. 166-167

Research output: Contribution to journalArticleAcademicpeer-review

Quantitative Trait Loci
Arabidopsis
Mass Spectrometry
Electrophoresis, Gel, Two-Dimensional
Liquid Chromatography
291 Citations (Scopus)

What has natural variation taught us about plant development, physiology, and adaptation?

Alonso-Blanco, C., Aarts, M. G. M., Bentsink, L., Keurentjes, J. J. B., Reymond, M., Vreugdenhil, D. & Koornneef, M., 2009, In : The Plant Cell. 21, 7, p. 1877-1896

Research output: Contribution to journalArticleAcademicpeer-review

Plant Physiological Phenomena
Plant Development
plant development
physiology
plant physiology
2008
20 Citations (Scopus)
Open Access
Arabidopsis
quantitative trait loci
Arabidopsis thaliana
Population
Seeds
59 Citations (Scopus)

Combined Genetic and Modeling Approaches Reveal That Epidermal Cell Area and Number in Leaves Are Controlled by Leaf and Plant Developmental Processes in Arabidopsis

Tisne, S., Reymond, M., Vile, D., Fabre, J., Dauzat, M., Koornneef, M. & Granier, C., 2008, In : Plant Physiology. 148, p. 1117-1127

Research output: Contribution to journalArticleAcademicpeer-review

Plant Leaves
Quantitative Trait Loci
Arabidopsis
Cell Count
Cell Division
77 Citations (Scopus)

Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana

Keurentjes, J. J. B., Sulpice, R., Gibon, Y., Steinhauser, M. C., Fu, J., Koornneef, M., Stitt, M. & Vreugdenhil, D., 2008, In : Genome Biology. 9, 8, R129.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Carbohydrate Metabolism
carbohydrate metabolism
Arabidopsis
enzyme activity
genetic variation
42 Citations (Scopus)

Mapping QTLs for mineral accumulation and shoot dry biomass under different Zn nutritional conditions in Chinese cabbage ( Brassica rapa L. ssp. pekinensis )

Wu, J., Yuan, Y. X., Zhang, X. W., Zhao, J., Song, X., Li, Y., Li, X., Sun, R., Koornneef, M., Aarts, M. G. M. & Wang, X. W., 2008, In : Plant and Soil. 310, 1-2, p. 25-40

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chinese cabbage
Brassica rapa
quantitative trait loci
shoot
minerals
114 Citations (Scopus)

Next generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world

Ainsworth, E. A., Beier, C., Calfapietra, C., Ceulemans, R., Durand-Tardif, M. & Koornneef, M., 2008, In : Plant, Cell & Environment. 31, 9, p. 1317-1324

Research output: Contribution to journalArticleAcademicpeer-review

carbon dioxide
Genotype
crops
Air
Systems Biology