Kumar Singh
Contact Expert

Kumar Singh

dr.

 https://orcid.org/0000-0001-8352-5897

    Search results

    • 2025

      Effective data visualization strategies in untargeted metabolomics

      Mildau, K., Ehlers, H., Meisenburg, M., Del Pup, E., Koetsier, R. A., Torres Ortega, L. R., de Jonge, N. F., Singh, K. S., Ferreira, D., Othibeng, K., Tugizimana, F., Huber, F. & van der Hooft, J. J. J., 2025, In: Natural Product Reports. 42, 6, p. 982-1019 38 p.

      Research output: Contribution to journal › Literature review › peer-review

      Open Access

    • MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

      Zdouc, M. M., Blin, K., Louwen, N. L. L., Navarro, J., Loureiro, C., Bader, C. D., Bailey, C. B., Barra, L., Booth, T. J., Bozhüyük, K. A. J., Cediel-Becerra, J. D. D., Charlop-Powers, Z., Chevrette, M. G., Chooi, Y. H., D’Agostino, P. M., de Rond, T., Pup, E. D., Duncan, K. R., Gu, W. & Hanif, N. & 268 others, Helfrich, E., Jenner, M., Katsuyama, Y., Korenskaia, A., Krug, D., Libis, V., Lund, G. A., Mantri, S., Morgan, K. D., Owen, C., Phan, C. S., Philmus, B., Reitz, Z., Robinson, S. L., Singh, K. S., Teufel, R., Tong, Y., Tugizimana, F., Ulanova, D., Winter, J., Aguilar, C., Akiyama, D. Y., Al-Salihi, S., Alanjary, M., Alberti, F., Aleti, G., Alharthi, S. A., Arias Rojo, M. Y., Arishi, A., Augustijn, H. E., Avalon, N. E., Avelar-Rivas, A., Axt, K. K., Barbieri, H. B., Barbosa, J. C. J., Segato, L. G. B., Barrett, S. E., Baunach, M., Beemelmanns, C., Beqaj, D., Berger, T., Bernaldo-Agüero, J., Bettenbühl, S. M., Bielinski, V. A., Biermann, F., Borges, R. M., Borriss, R., Breitenbach, M., Bretscher, K. M., Brigham, M. W., Buedenbender, L., Bulcock, B. W., Cano-Prieto, C., Capela, J., Carrion, V. J., Carter, R. S., Castelo-Branco, R., Castro-Falcón, G., Chagas, F. O., Charria-Girón, E., Chaudhri, A. A., Chaudhry, V., Choi, H., Choi, Y., Choupannejad, R., Chromy, J., Chue Donahey, M. S., Collemare, J., Connolly, J. A., Creamer, K. E., Crüsemann, M., Cruz, A. A., Cumsille, A., Dallery, J. F., Damas-Ramos, L. C., Damiani, T., de Kruijff, M., Martín, B. D., Sala, G. D., Dillen, J., Doering, D. T., Dommaraju, S. R., Durusu, S., Egbert, S., Ellerhorst, M., Faussurier, B., Fetter, A., Feuermann, M., Fewer, D. P., Foldi, J., Frediansyah, A., Garza, E. A., Gavriilidou, A., Gentile, A., Gerke, J., Gerstmans, H., Gomez-Escribano, J. P., González-Salazar, L. A., Grayson, N. E., Greco, C., Gris Gomez, J. E., Guerra, S., Flores, S. G., Gurevich, A., Gutiérrez-García, K., Hart, L., Haslinger, K., He, B., Hebra, T., Hemmann, J. L., Hindra, H., Höing, L., Holland, D. C., Holme, J. E., Horch, T., Hrab, P., Hu, J., Huynh, T. H., Hwang, J. Y., Iacovelli, R., Iftime, D., Iorio, M., Jayachandran, S., Jeong, E., Jing, J., Jung, J. J., Kakumu, Y., Kalkreuter, E., Kang, K. B., Kang, S., Kim, W., Kim, G. J., Kim, H., Kim, H. U., Klapper, M., Koetsier, R. A., Kollten, C., Kovács, Á. T., Kriukova, Y., Kubach, N., Kunjapur, A. M., Kushnareva, A. K., Kust, A., Lamber, J., Larralde, M., Larsen, N. J., Launay, A. P., Le, N. T. H., Lebeer, S., Lee, B. T., Lee, K., Lev, K. L., Li, S. M., Li, Y. X., Licona-Cassani, C., Lien, A., Liu, J., Lopez, J. A. V., Machushynets, N. V., Macias, M. I., Mahmud, T., Maleckis, M., Martinez-Martinez, A. M., Mast, Y., Maximo, M. F., McBride, C. M., McLellan, R. M., Bhatt, K. M., Melkonian, C., Merrild, A., Metsä-Ketelä, M., Mitchell, D. A., Müller, A. V., Nguyen, G. S., Nguyen, H. T., Niedermeyer, T. H. J., O’Hare, J. H., Ossowicki, A., Ostash, B. O., Otani, H., Padva, L., Paliyal, S., Pan, X., Panghal, M., Parade, D. S., Park, J., Parra, J., Rubio, M. P., Pham, H. T., Pidot, S. J., Piel, J., Pourmohsenin, B., Rakhmanov, M., Ramesh, S., Rasmussen, M. H., Rego, A., Reher, R., Rice, A. J., Rigolet, A., Romero-Otero, A., Rosas-Becerra, L. R., Rosiles, P. Y., Rutz, A., Ryu, B., Sahadeo, L. A., Saldanha, M., Salvi, L., Sánchez-Carvajal, E., Santos-Medellin, C., Sbaraini, N., Schoellhorn, S. M., Schumm, C., Sehnal, L., Selem, N., Shah, A. D., Shishido, T. K., Sieber, S., Silviani, V., Singh, G., Singh, H., Sokolova, N., Sonnenschein, E. C., Sosio, M., Sowa, S. T., Steffen, K., Stegmann, E., Streiff, A. B., Strüder, A., Surup, F., Svenningsen, T., Sweeney, D., Szenei, J., Tagirdzhanov, A., Tan, B., Tarnowski, M. J., Terlouw, B. R., Rey, T., Thome, N. U., Ortega, L. R. T., Tørring, T., Trindade, M., Truman, A. W., Tvilum, M., Udwary, D. W., Ulbricht, C., Vader, L., van Wezel, G. P., Walmsley, M., Warnasinghe, R., Weddeling, H. G., Weir, A. N. M., Williams, K., Williams, S. E., Witte, T. E., Wood Rocca, S. M., Yamada, K., Yang, D., Yang, D., Yu, J., Zhou, Z., Ziemert, N., Zimmer, L., Zimmermann, A., Zimmermann, C., van der Hooft, J. J. J., Linington, R. G., Weber, T. & Medema, M. H., 6 Jan 2025, In: Nucleic acids research. 53, D1, 13 p.

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access
      25 Citations (Scopus)
    • 2024

      MEANtools: multi-omics integration towards metabolite anticipation and biosynthetic pathway prediction

      Singh, K. S., Suarez Duran, H., Del Pup, E., Zafra-Delgado, O., Van Wees, S. C. M., van der Hooft, J. & Medema, M. H., 23 Dec 2024, BioRxiv.

      Research output: Working paper › Preprint

      Open Access

    • Pairing omics to decode the diversity of plant specialized metabolism

      Wolters, F. C., Del Pup, E., Singh, K. S., Bouwmeester, K., Schranz, E., van der Hooft, J. J. J. & Medema, M. H., Dec 2024, In: Current Opinion in Plant Biology. 82, 9 p., 102657.

      Research output: Contribution to journal › Literature review › peer-review

      Open Access
      2 Citations (Scopus)
    • 2023

      MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

      Terlouw, B. R., Blin, K., Navarro-Muñoz, J. C., Avalon, N. E., Chevrette, M. G., Egbert, S., Lee, S., Meijer, D., Recchia, M. J. J., Reitz, Z., van Santen, J., Selem-Mojica, N., Tørring, T., Zaroubi, L., Alanjary, M., Aleti, G., Aguilar, C., Al-Salihi, S. A., Augustijn, H. & Avelar-Rivas, J. A. & 62 others, Avitia-Domínguez, L., Barona-Gómez, F., Bernaldo-Agüero, J., Bielinski, V. A., Biermann, F., Booth, T., Carrion Bravo, V., Castelo-Branco, R., Chagas, F., Cruz-Morales, P., Du, C., Duncan, K., Gavriilidou, A., Gayrard, D., Gutiérrez-García, K., Haslinger, K., Helfrich, E. N., van der Hooft, J. J., Jati, A., Kalkreuter, E., Kalyvas, N., Kang, K., Kautsar, S., Kim, W., Kunjapur, A., Li, Y.-X., Lin, G.-M., Loureiro, C., Louwen, J. R., Louwen, N. L., Lund, G., Parra, J., Philmus, B., Pourmohsenin, B., Pronk, L. U., Rego, A., Rex, D., Robinson, S., Rosas-Becerra, L. R., Roxborough, E., Schorn, M., Scobie, D., Singh, K., Sokolova, N., Tang, X., Udwary, D., Vigneshwari, A., Vind, K., Vromans, S. J. M., Waschulin, V., Williams, S., Winter, J., Witte, T., Xie, H., Yang, D., Yu, J., Zdouc, M., Zhong, Z., Collemare, J., Linington, R., Weber, T. & Medema, M., 6 Jan 2023, In: Nucleic acids research. 51, D1, p. D603-D610

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access
      240 Citations (Scopus)
    • 2022

      Draft Genome Sequences of the Vibrio parahaemolyticus Strains VHT1 and VHT2, Pasteurization-Resistant Isolates from Environmental Seafood

      Meza, G., Majrshi, H., Singh, K. S., Deole, R. & Tiong, H. K., 17 Oct 2022, In: Microbiology Resource Announcements. 11, 11, p. 1-2

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access
      2 Citations (Scopus)

    • Genome assembly of Danaus chrysippus and comparison with the Monarch Danaus plexippus

      Singh, K. S., De-Kayne, R., Omufwoko, K. S., Martins, D. J., Bass, C., Ffrench-Constant, R. & Martin, S. H., Mar 2022, In: G3 (Bethesda, Md.). 12, 3, jkab449.

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access
      7 Citations (Scopus)

    • Integrative omics approaches for biosynthetic pathway discovery in plants

      Singh, K. S., van der Hooft, J. J. J., van Wees, S. C. M. & Medema, M. H., 2022, In: Natural Product Reports. 39, 9, p. 1876-1896

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access
      48 Citations (Scopus)
    • 2021

      Danaus chrysippus Genome 2.1

      Singh, K. S., 2021

      Research output: Non-textual form › Software

      Open Access