Kumar Singh

Kumar Singh

dr.

 https://orcid.org/0000-0001-8352-5897

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    • MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

      Zdouc, M. M., Blin, K., Louwen, N. L. L., Navarro, J., Loureiro, C., Bader, C. D., Bailey, C. B., Barra, L., Booth, T. J., Bozhüyük, K. A. J., Cediel-Becerra, J. D. D., Charlop-Powers, Z., Chevrette, M. G., Chooi, Y. H., D’Agostino, P. M., de Rond, T., Pup, E. D., Duncan, K. R., Gu, W. & Hanif, N. & 268 others, Helfrich, E., Jenner, M., Katsuyama, Y., Korenskaia, A., Krug, D., Libis, V., Lund, G. A., Mantri, S., Morgan, K. D., Owen, C., Phan, C. S., Philmus, B., Reitz, Z., Robinson, S. L., Singh, K. S., Teufel, R., Tong, Y., Tugizimana, F., Ulanova, D., Winter, J., Aguilar, C., Akiyama, D. Y., Al-Salihi, S., Alanjary, M., Alberti, F., Aleti, G., Alharthi, S. A., Arias Rojo, M. Y., Arishi, A., Augustijn, H. E., Avalon, N. E., Avelar-Rivas, A., Axt, K. K., Barbieri, H. B., Barbosa, J. C. J., Segato, L. G. B., Barrett, S. E., Baunach, M., Beemelmanns, C., Beqaj, D., Berger, T., Bernaldo-Agüero, J., Bettenbühl, S. M., Bielinski, V. A., Biermann, F., Borges, R. M., Borriss, R., Breitenbach, M., Bretscher, K. M., Brigham, M. W., Buedenbender, L., Bulcock, B. W., Cano-Prieto, C., Capela, J., Carrion, V. J., Carter, R. S., Castelo-Branco, R., Castro-Falcón, G., Chagas, F. O., Charria-Girón, E., Chaudhri, A. A., Chaudhry, V., Choi, H., Choi, Y., Choupannejad, R., Chromy, J., Chue Donahey, M. S., Collemare, J., Connolly, J. A., Creamer, K. E., Crüsemann, M., Cruz, A. A., Cumsille, A., Dallery, J. F., Damas-Ramos, L. C., Damiani, T., de Kruijff, M., Martín, B. D., Sala, G. D., Dillen, J., Doering, D. T., Dommaraju, S. R., Durusu, S., Egbert, S., Ellerhorst, M., Faussurier, B., Fetter, A., Feuermann, M., Fewer, D. P., Foldi, J., Frediansyah, A., Garza, E. A., Gavriilidou, A., Gentile, A., Gerke, J., Gerstmans, H., Gomez-Escribano, J. P., González-Salazar, L. A., Grayson, N. E., Greco, C., Gris Gomez, J. E., Guerra, S., Flores, S. G., Gurevich, A., Gutiérrez-García, K., Hart, L., Haslinger, K., He, B., Hebra, T., Hemmann, J. L., Hindra, H., Höing, L., Holland, D. C., Holme, J. E., Horch, T., Hrab, P., Hu, J., Huynh, T. H., Hwang, J. Y., Iacovelli, R., Iftime, D., Iorio, M., Jayachandran, S., Jeong, E., Jing, J., Jung, J. J., Kakumu, Y., Kalkreuter, E., Kang, K. B., Kang, S., Kim, W., Kim, G. J., Kim, H., Kim, H. U., Klapper, M., Koetsier, R. A., Kollten, C., Kovács, Á. T., Kriukova, Y., Kubach, N., Kunjapur, A. M., Kushnareva, A. K., Kust, A., Lamber, J., Larralde, M., Larsen, N. J., Launay, A. P., Le, N. T. H., Lebeer, S., Lee, B. T., Lee, K., Lev, K. L., Li, S. M., Li, Y. X., Licona-Cassani, C., Lien, A., Liu, J., Lopez, J. A. V., Machushynets, N. V., Macias, M. I., Mahmud, T., Maleckis, M., Martinez-Martinez, A. M., Mast, Y., Maximo, M. F., McBride, C. M., McLellan, R. M., Bhatt, K. M., Melkonian, C., Merrild, A., Metsä-Ketelä, M., Mitchell, D. A., Müller, A. V., Nguyen, G. S., Nguyen, H. T., Niedermeyer, T. H. J., O’Hare, J. H., Ossowicki, A., Ostash, B. O., Otani, H., Padva, L., Paliyal, S., Pan, X., Panghal, M., Parade, D. S., Park, J., Parra, J., Rubio, M. P., Pham, H. T., Pidot, S. J., Piel, J., Pourmohsenin, B., Rakhmanov, M., Ramesh, S., Rasmussen, M. H., Rego, A., Reher, R., Rice, A. J., Rigolet, A., Romero-Otero, A., Rosas-Becerra, L. R., Rosiles, P. Y., Rutz, A., Ryu, B., Sahadeo, L. A., Saldanha, M., Salvi, L., Sánchez-Carvajal, E., Santos-Medellin, C., Sbaraini, N., Schoellhorn, S. M., Schumm, C., Sehnal, L., Selem, N., Shah, A. D., Shishido, T. K., Sieber, S., Silviani, V., Singh, G., Singh, H., Sokolova, N., Sonnenschein, E. C., Sosio, M., Sowa, S. T., Steffen, K., Stegmann, E., Streiff, A. B., Strüder, A., Surup, F., Svenningsen, T., Sweeney, D., Szenei, J., Tagirdzhanov, A., Tan, B., Tarnowski, M. J., Terlouw, B. R., Rey, T., Thome, N. U., Ortega, L. R. T., Tørring, T., Trindade, M., Truman, A. W., Tvilum, M., Udwary, D. W., Ulbricht, C., Vader, L., van Wezel, G. P., Walmsley, M., Warnasinghe, R., Weddeling, H. G., Weir, A. N. M., Williams, K., Williams, S. E., Witte, T. E., Wood Rocca, S. M., Yamada, K., Yang, D., Yang, D., Yu, J., Zhou, Z., Ziemert, N., Zimmer, L., Zimmermann, A., Zimmermann, C., van der Hooft, J. J. J., Linington, R. G., Weber, T. & Medema, M. H., 6 Jan 2025, In: Nucleic acids research. 53, D1, 13 p.

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access
      21 Citations (Scopus)

    • Effective data visualization strategies in untargeted metabolomics

      Mildau, K., Ehlers, H., Meisenburg, M., Del Pup, E., Koetsier, R. A., Torres Ortega, L. R., de Jonge, N. F., Singh, K. S., Ferreira, D., Othibeng, K., Tugizimana, F., Huber, F. & van der Hooft, J. J. J., 2 Dec 2024, (E-pub ahead of print) In: Natural Product Reports. 38 p.

      Research output: Contribution to journal › Literature review › peer-review

      Open Access

    • Pairing omics to decode the diversity of plant specialized metabolism

      Wolters, F. C., Del Pup, E., Singh, K. S., Bouwmeester, K., Schranz, E., van der Hooft, J. J. J. & Medema, M. H., Dec 2024, In: Current Opinion in Plant Biology. 82, 9 p., 102657.

      Research output: Contribution to journal › Literature review › peer-review

      Open Access
      1 Citation (Scopus)

    • MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

      Terlouw, B. R., Blin, K., Navarro-Muñoz, J. C., Avalon, N. E., Chevrette, M. G., Egbert, S., Lee, S., Meijer, D., Recchia, M. J. J., Reitz, Z., van Santen, J., Selem-Mojica, N., Tørring, T., Zaroubi, L., Alanjary, M., Aleti, G., Aguilar, C., Al-Salihi, S. A., Augustijn, H. & Avelar-Rivas, J. A. & 62 others, Avitia-Domínguez, L., Barona-Gómez, F., Bernaldo-Agüero, J., Bielinski, V. A., Biermann, F., Booth, T., Carrion Bravo, V., Castelo-Branco, R., Chagas, F., Cruz-Morales, P., Du, C., Duncan, K., Gavriilidou, A., Gayrard, D., Gutiérrez-García, K., Haslinger, K., Helfrich, E. N., van der Hooft, J. J., Jati, A., Kalkreuter, E., Kalyvas, N., Kang, K., Kautsar, S., Kim, W., Kunjapur, A., Li, Y.-X., Lin, G.-M., Loureiro, C., Louwen, J. R., Louwen, N. L., Lund, G., Parra, J., Philmus, B., Pourmohsenin, B., Pronk, L. U., Rego, A., Rex, D., Robinson, S., Rosas-Becerra, L. R., Roxborough, E., Schorn, M., Scobie, D., Singh, K., Sokolova, N., Tang, X., Udwary, D., Vigneshwari, A., Vind, K., Vromans, S. J. M., Waschulin, V., Williams, S., Winter, J., Witte, T., Xie, H., Yang, D., Yu, J., Zdouc, M., Zhong, Z., Collemare, J., Linington, R., Weber, T. & Medema, M., 6 Jan 2023, In: Nucleic acids research. 51, D1, p. D603-D610

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access
      229 Citations (Scopus)

    • Draft Genome Sequences of the Vibrio parahaemolyticus Strains VHT1 and VHT2, Pasteurization-Resistant Isolates from Environmental Seafood

      Meza, G., Majrshi, H., Singh, K. S., Deole, R. & Tiong, H. K., 17 Oct 2022, In: Microbiology Resource Announcements. 11, 11, p. 1-2

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access
      2 Citations (Scopus)
    View all 8 research outputs

    • D.chry2.2 assembly

      Singh, K. (Creator), De-Kayne, R. (Creator), Omufwoko, K. S. (Creator), Martins, D. J. (Creator), Bass, C. (Creator), Ffrench-Constant, R. (Creator) & Martin, S. H. (Creator), University of Edinburgh, 2 Oct 2021

      https://www.ncbi.nlm.nih.gov/bioproject/PRJEB47812

      Dataset

    • Data from: Genome assembly of Danaus chrysippus and comparison with the Monarch Danaus plexippus

      Singh, K. S. (Creator), De-Kayne, R. (Creator), Omufwoko, K. S. (Creator), Martins, D. (Creator), Bass, C. (Creator), Ffrench-Constant, R. (Creator) & Martin, S. H. (Creator), Wageningen University, 27 Nov 2021

      DOI: 10.5281/zenodo.5731560

      Dataset

    • The Minimum Information about a Biosynthetic Gene Cluster (MIBiG) data repository

      Zdouc, M. M. (Creator), Blin, K. (Creator), Louwen, N. L. L. (Creator), Navarro, J. (Creator), Loureiro, C. (Creator), Bader, C. D. (Creator), Bailey, C. B. (Creator), Barra, L. (Creator), Booth, T. J. (Creator), Bozhüyük, K. A. J. (Creator), Cediel-Becerra, J. D. D. (Creator), Charlop-Powers, Z. (Creator), Chevrette, M. G. (Creator), Chooi, Y. H. (Creator), D’Agostino, P. M. (Creator), de Rond, T. (Creator), Pup, E. D. (Creator), Duncan, K. R. (Creator), Gu, W. (Creator), Hanif, N. (Creator), Helfrich, E. (Creator), Jenner, M. (Creator), Katsuyama, Y. (Creator), Korenskaia, A. (Creator), Krug, D. (Creator), Libis, V. (Creator), Lund, G. A. (Creator), Mantri, S. (Creator), Morgan, K. D. (Creator), Owen, C. (Creator), Phan, C. S. (Creator), Philmus, B. (Creator), Reitz, Z. (Creator), Robinson, S. L. (Creator), Singh, K. S. (Creator), Teufel, R. (Creator), Tong, Y. (Creator), Tugizimana, F. (Creator), Ulanova, D. (Creator), Winter, J. (Creator), Aguilar, C. (Creator), Akiyama, D. Y. (Creator), Al-Salihi, S. (Creator), Alanjary, M. (Creator), Alberti, F. (Creator), Aleti, G. (Creator), Alharthi, S. A. (Creator), Arias Rojo, M. Y. (Creator), Arishi, A. (Creator), Augustijn, H. E. (Creator), Avalon, N. E. (Creator), Avelar-Rivas, A. (Creator), Axt, K. K. (Creator), Barbieri, H. B. (Creator), Barbosa, J. C. J. (Creator), Segato, L. G. B. (Creator), Barrett, S. E. (Creator), Baunach, M. (Creator), Beemelmanns, C. (Creator), Beqaj, D. (Creator), Berger, T. (Creator), Bernaldo-Agüero, J. (Creator), Bettenbühl, S. M. (Creator), Bielinski, V. A. (Creator), Biermann, F. (Creator), Borges, R. M. (Creator), Borriss, R. (Creator), Breitenbach, M. (Creator), Bretscher, K. M. (Creator), Brigham, M. W. (Creator), Buedenbender, L. (Creator), Bulcock, B. W. (Creator), Cano-Prieto, C. (Creator), Capela, J. (Creator), Carrion, V. J. (Creator), Carter, R. S. (Creator), Castelo-Branco, R. (Creator), Castro-Falcón, G. (Creator), Chagas, F. O. (Creator), Charria-Girón, E. (Creator), Chaudhri, A. A. (Creator), Chaudhry, V. (Creator), Choi, H. (Creator), Choi, Y. (Creator), Choupannejad, R. (Creator), Chromy, J. (Creator), Chue Donahey, M. S. (Creator), Collemare, J. (Creator), Connolly, J. A. (Creator), Creamer, K. E. (Creator), Crüsemann, M. (Creator), Cruz, A. A. (Creator), Cumsille, A. (Creator), Dallery, J. F. (Creator), Damas-Ramos, L. C. (Creator), Damiani, T. (Creator), de Kruijff, M. (Creator), Martín, B. D. (Creator), Sala, G. D. (Creator), Dillen, J. (Creator), Doering, D. T. (Creator), Dommaraju, S. R. (Creator), Durusu, S. (Creator), Egbert, S. (Creator), Ellerhorst, M. (Creator), Faussurier, B. (Creator), Fetter, A. (Creator), Feuermann, M. (Creator), Fewer, D. P. (Creator), Foldi, J. (Creator), Frediansyah, A. (Creator), Garza, E. A. (Creator), Gavriilidou, A. (Creator), Gentile, A. (Creator), Gerke, J. (Creator), Gerstmans, H. (Creator), Gomez-Escribano, J. P. (Creator), González-Salazar, L. A. (Creator), Grayson, N. E. (Creator), Greco, C. (Creator), Gris Gomez, J. E. (Creator), Guerra, S. (Creator), Flores, S. G. (Creator), Gurevich, A. (Creator), Gutiérrez-García, K. (Creator), Hart, L. (Creator), Haslinger, K. (Creator), He, B. (Creator), Hebra, T. (Creator), Hemmann, J. L. (Creator), Hindra, H. (Creator), Höing, L. (Creator), Holland, D. C. (Creator), Holme, J. E. (Creator), Horch, T. (Creator), Hrab, P. (Creator), Hu, J. (Creator), Huynh, T. H. (Creator), Hwang, J. Y. (Creator), Iacovelli, R. (Creator), Iftime, D. (Creator), Iorio, M. (Creator), Jayachandran, S. (Creator), Jeong, E. (Creator), Jing, J. (Creator), Jung, J. J. (Creator), Kakumu, Y. (Creator), Kalkreuter, E. (Creator), Kang, K. B. (Creator), Kang, S. (Creator), Kim, W. (Creator), Kim, G. J. (Creator), Kim, H. (Creator), Kim, H. U. (Creator), Klapper, M. (Creator), Koetsier, R. A. (Creator), Kollten, C. (Creator), Kovács, Á. T. (Creator), Kriukova, Y. (Creator), Kubach, N. (Creator), Kunjapur, A. M. (Creator), Kushnareva, A. K. (Creator), Kust, A. (Creator), Lamber, J. (Creator), Larralde, M. (Creator), Larsen, N. J. (Creator), Launay, A. P. (Creator), Le, N. T. H. (Creator), Lebeer, S. (Creator), Lee, B. T. (Creator), Lee, K. (Creator), Lev, K. L. (Creator), Li, S. M. (Creator), Li, Y. X. (Creator), Licona-Cassani, C. (Creator), Lien, A. (Creator), Liu, J. (Creator), Lopez, J. A. V. (Creator), Machushynets, N. V. (Creator), Macias, M. I. (Creator), Mahmud, T. (Creator), Maleckis, M. (Creator), Martinez-Martinez, A. M. (Creator), Mast, Y. (Creator), Maximo, M. F. (Creator), McBride, C. M. (Creator), McLellan, R. M. (Creator), Bhatt, K. M. (Creator), Melkonian, C. (Creator), Merrild, A. (Creator), Metsä-Ketelä, M. (Creator), Mitchell, D. A. (Creator), Müller, A. V. (Creator), Nguyen, G. S. (Creator), Nguyen, H. T. (Creator), Niedermeyer, T. H. J. (Creator), O’Hare, J. H. (Creator), Ossowicki, A. (Creator), Ostash, B. O. (Creator), Otani, H. (Creator), Padva, L. (Creator), Paliyal, S. (Creator), Pan, X. (Creator), Panghal, M. (Creator), Parade, D. S. (Creator), Park, J. (Creator), Parra, J. (Creator), Rubio, M. P. (Creator), Pham, H. T. (Creator), Pidot, S. J. (Creator), Piel, J. (Creator), Pourmohsenin, B. (Creator), Rakhmanov, M. (Creator), Ramesh, S. (Creator), Rasmussen, M. H. (Creator), Rego, A. (Creator), Reher, R. (Creator), Rice, A. J. (Creator), Rigolet, A. (Creator), Romero-Otero, A. (Creator), Rosas-Becerra, L. R. (Creator), Rosiles, P. Y. (Creator), Rutz, A. (Creator), Ryu, B. (Creator), Sahadeo, L. A. (Creator), Saldanha, M. (Creator), Salvi, L. (Creator), Sánchez-Carvajal, E. (Creator), Santos-Medellin, C. (Creator), Sbaraini, N. (Creator), Schoellhorn, S. M. (Creator), Schumm, C. (Creator), Sehnal, L. (Creator), Selem, N. (Creator), Shah, A. D. (Creator), Shishido, T. K. (Creator), Sieber, S. (Creator), Silviani, V. (Creator), Singh, G. (Creator), Singh, H. (Creator), Sokolova, N. (Creator), Sonnenschein, E. C. (Creator), Sosio, M. (Creator), Sowa, S. T. (Creator), Steffen, K. (Creator), Stegmann, E. (Creator), Streiff, A. B. (Creator), Strüder, A. (Creator), Surup, F. (Creator), Svenningsen, T. (Creator), Sweeney, D. (Creator), Szenei, J. (Creator), Tagirdzhanov, A. (Creator), Tan, B. (Creator), Tarnowski, M. J. (Creator), Terlouw, B. R. (Creator), Rey, T. (Creator), Thome, N. U. (Creator), Ortega, L. R. T. (Creator), Tørring, T. (Creator), Trindade, M. (Creator), Truman, A. W. (Creator), Tvilum, M. (Creator), Udwary, D. W. (Creator), Ulbricht, C. (Creator), Vader, L. (Creator), van Wezel, G. P. (Creator), Walmsley, M. (Creator), Warnasinghe, R. (Creator), Weddeling, H. G. (Creator), Weir, A. N. M. (Creator), Williams, K. (Creator), Williams, S. E. (Creator), Witte, T. E. (Creator), Wood Rocca, S. M. (Creator), Yamada, K. (Creator), Yang, D. (Creator), Yang, D. (Creator), Yu, J. (Creator), Zhou, Z. (Creator), Ziemert, N. (Creator), Zimmer, L. (Creator), Zimmermann, A. (Creator), Zimmermann, C. (Creator), van der Hooft, J. J. J. (Creator), Linington, R. G. (Creator), Weber, T. (Creator) & Medema, M. H. (Creator), Wageningen University & Research, 15 Nov 2024

      DOI: 10.5281/zenodo.13367755

      Dataset