Datasets
- 19 results
Search results
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Data for iPRESTO: automated discovery of biosynthetic sub-clusters linked to specific natural product substructures
Louwen, J. J. R. (Creator), Kautsar, S. A. (Creator), van der Burg, S. (Creator), Medema, M. (Creator) & van der Hooft, J. (Creator), Wageningen University & Research, 2 Aug 2022
Dataset
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From mass spectral features to molecules in molecular networks: MolNotator LDB dataset.
Olivier-Jimenez, D. (Creator), Bouchouireb, Z. (Creator), Ollivier, S. (Creator), Mocquard, J. (Creator), Allard, P. (Creator), Bernadat, G. (Creator), Chollet-Krugler, M. (Creator), Rondeau, D. (Creator), Boustie, J. (Creator), van der Hooft, J. (Creator) & Wolfender, J. (Creator), 16 Dec 2021
Dataset
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Data from: Assessing specialized metabolite diversity in the cosmopolitan plant genus Euphorbia L.
Ernst, M. (Creator), Nothias, L. F. (Creator), van der Hooft, J. (Creator), Silva, R. R. (Creator), Saslis-Lagoudakis, C. H. (Creator), Grace, O. M. (Creator), Martinez-Swatson, K. (Creator), Hassemer, G. (Creator), Funez, L. A. (Creator), Simonsen, H. T. (Creator), Medema, M. (Creator), Staerk, D. (Creator), Nilsson, N. (Creator), Lovato, P. (Creator), Dorrestein, P. C. (Creator) & Rønsted, N. (Creator), 17 Jul 2019
Dataset
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Supporting data for "BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters"
Kautsar, S. (Creator), van der Hooft, J. (Creator), de Ridder, D. (Creator) & Medema, M. (Creator), Wageningen University & Research, 24 Nov 2020
DOI: 10.5524/100826
Dataset
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Collection of fragmentation mass spectra (all from GNPS, accessed on 2020-05-11)
Huber, F. (Creator), Ridder, L. (Creator), Verhoeven, S. (Creator), Spaaks, J. H. (Creator), Diblen, F. (Creator), Rogers, S. (Creator) & van der Hooft, J. (Creator), 11 Aug 2020
Dataset
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A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters
Witjes, L. (Creator), Kooke, R. (Creator), van der Hooft, J. (Creator), de Vos, R. (Creator), Keurentjes, J. (Creator), Medema, M. (Creator) & Nijveen, H. (Creator), Wageningen University & Research, 2 Apr 2019
DOI: 10.6084/m9.figshare.c.4456952
Dataset
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Solanum lycopersicum non-smoky glycosyltransferase 1 (NSGT1) mRNA, complete cds
Tikunov, Y. (Creator), Molthoff, J. (Creator), de Vos, R. (Creator), Beekwilder, M. J. (Creator), van Houwelingen, A. (Creator), van der Hooft, J. (Creator), Nijenhuis, M. (Creator), Labrie, C. (Creator), Verkerke, W. (Creator), van de Geest, H. C. (Creator), Viquez Zamora, M. (Creator), Presa, S. (Creator), Rambla Nebot, J. L. (Creator), Granell, A. (Creator), Hall, R. (Creator) & Bovy, A. (Creator), Wageningen University & Research, 23 Aug 2013
https://www.ncbi.nlm.nih.gov/popset/512493188
Dataset
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GNPS - Stool (fecal) HILIC LC-MS/MS and LC-MS NEG mode data from clinical cohort - used for MS2LDA substructure discovery
van der Hooft, J. (Creator), Wageningen University, 2020
DOI: 10.25345/c5tq4q
Dataset
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GNPS-The effect of olive mill solid waste (OMSW) on the diversity of medicinal mushrooms specialized metabolism. Positive ion mode
van der Hooft, J. (Creator) & Khatib, S. (Creator), Wageningen University & Research, 16 Dec 2022
DOI: 10.25345/c5w669d5f
Dataset
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GNPS-The effect of olive mill solid waste (OMSW) on the diversity of medicinal mushrooms specialized metabolism. Negative ion mode
van der Hooft, J. (Creator) & Khatib, S. (Creator), Wageningen University & Research, 16 Dec 2022
DOI: 10.25345/c5rj49041
Dataset
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Pre-computed MGCs from human microbiome reference genomes
Andreu, V. P. (Creator), Augustijn, H. (Creator), van den Berg, K. (Creator), van der Hooft, J. (Creator), Fischbach, M. A. (Creator) & Medema, M. (Creator), Wageningen University, 26 Oct 2022
Dataset
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Ranunculales supplementary data
Mutabdžija, L. (Creator), Myoli, A. (Creator), de Jonge, N. (Creator), Damiani, T. (Creator), Schmid, R. (Creator), van der Hooft, J. (Creator), Tugizimana, F. (Creator) & Pluskal, T. (Creator), Zenodo, 30 Mar 2023
Dataset
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GNPS - Urine LC-MS/MS data used for Antihypertensive Drug Screening Validation Study
van der Hooft, J. (Creator), Barrett, M. (Creator) & Padmanabhan, S. (Creator), Wageningen University, 2021
DOI: 10.25345/c5ws0h
Dataset
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GNPS - Stool (fecal) HILIC LC-MS/MS and LC-MS POS mode data from clinical cohort - used for MS2LDA substructure discovery
van der Hooft, J. (Creator), Wageningen University, 2020
DOI: 10.25345/c5zd70
Dataset
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NPOmix 1: antiSMASH results from 1,040 PoDP paired samples
Leao, T. F. (Creator), Wang, M. (Creator), Silva, R. (Creator), Gurevich, A. (Creator), Bauermeister, A. (Creator), Gomes, P. W. P. (Creator), Brejnrod, A. (Creator), Glukhov, E. (Creator), Aron, A. T. (Creator), Louwen, J. (Creator), Kim, H. W. (Creator), Reher, R. (Creator), Fiore, M. F. (Creator), van der Hooft, J. (Creator), Gerwick, L. (Creator), Gerwick, W. H. (Creator), Bandeira, N. (Creator) & Dorrestein, P. C. (Creator), University of California, 13 Jun 2022
Dataset
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BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes
Pascal Andreu, V. (Creator), Augustijn, H. (Creator), van den Berg, K. (Creator), van der Hooft, J. (Creator), Fischbach, M. A. (Creator) & Medema, M. (Creator), Wageningen University, 15 Dec 2020
Dataset
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Cleaned and pre-processed MS/MS datset (build from all positive ionmode spectra in GNPS) - zip file
Huber, F. (Creator), Ridder, L. (Creator), Verhoeven, S. (Creator), Spaaks, J. H. (Creator), Diblen, F. (Creator), Rogers, S. (Creator) & van der Hooft, J. (Creator), 10 Aug 2020
Dataset
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Paired omics Data Platform projects
Verhoeven, S. (Creator), Schorn, M. (Contributor), Medema, M. (Contributor), Dorrestein, P. C. (Creator) & van der Hooft, J. (Creator), 1 Apr 2020
Dataset
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The Natural Products Atlas - data download
Van Santen, J. A. (Creator), Jacob, G. (Creator), Singh, A. L. (Creator), Aniebok, V. (Creator), Balunas, M. J. (Creator), Bunsko, D. (Creator), Neto, F. C. (Creator), Castaño-Espriu, L. (Creator), Chang, C. (Creator), Clark, T. N. (Creator), Cleary Little, J. L. (Creator), Delgadillo, D. A. (Creator), Dorrestein, P. C. (Creator), Duncan, K. R. (Creator), Egan, J. M. (Creator), Galey, M. M. (Creator), Haeckl, J. (Creator), Hua, A. (Creator), Hughes, A. H. (Creator), Iskakova, D. (Creator), Khadilkar, A. (Creator), Lee, J. H. (Creator), Lee, S. (Creator), Legrow, N. (Creator), Liu, D. Y. (Creator), Macho, J. M. (Creator), McCaughey, C. S. (Creator), Medema, M. (Creator), Neupane, R. P. (Creator), O'Donnell, T. J. (Creator), Paula, J. S. (Creator), Sanchez, L. M. (Creator), Shaikh, A. F. (Creator), Soldatou, S. (Creator), Terlouw, B. (Creator), Tran, T. A. (Creator), Valentine, M. (Creator), van der Hooft, J. (Creator), Vo, D. A. (Creator), Wang, M. (Creator), Wilson, D. (Creator), Zink, K. E. (Creator) & Linington, R. G. (Creator), Wageningen University, 19 May 2021
Dataset