Justin van der Hooft

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1 Similar Researchers

63 Article
2 Comment/Letter to the editor
2 Software
1 Chapter
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An isotopic labeling approach linking natural products with biosynthetic gene clusters
McCaughey, C. S., van Santen, J. A., van der Hooft, J. J. J., Medema, M. H. & Linington, R. G., Mar 2022, In: Nature Chemical Biology. 18, 3, p. 295-304
Research output: Contribution to journal › Article › Academic › peer-review
Fungi population metabolomics and molecular network study reveal novel biomarkers for early detection of aflatoxigenic Aspergillus species
Xie, H., Wang, X., van der Hooft, J. J. J., Medema, M. H., Chen, Z. Y., Yue, X., Zhang, Q. & Li, P., 15 Feb 2022, In: Journal of Hazardous Materials. 424, 127173.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
2 Citations (Scopus)
A community resource for paired genomic and metabolomic data mining
Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A., Brejnrod, A. & 90 others, Bugni, T. S., Calteau, A., Cao, L., Carrión, V. J., Castelo-Branco, R., Chanana, S., Chase, A. B., Chevrette, M. G., Costa-Lotufo, L. V., Crawford, J. M., Currie, C. R., Cuypers, B., Dang, T., de Rond, T., Demko, A. M., Dittmann, E., Du, C., Drozd, C., Dujardin, J-C., Dutton, R. J., Edlund, A., Fewer, D. P., Garg, N., Gauglitz, J. M., Gentry, E. C., Gerwick, L., Glukhov, E., Gross, H., Gugger, M., Guillén Matus, D. G., Helfrich, E. J. N., Hempel, B-F., Hur, J-S., Iorio, M., Jensen, P. R., Kang, K. B., Kaysser, L., Kelleher, N. L., Kim, C. S., Kim, K. H., Koester, I., König, G. M., Leao, T., Lee, S. R., Lee, Y-Y., Li, X., Little, J. C., Maloney, K. N., Männle, D., Martin H., C., Mcavoy, A. C., Metcalf, W. W., Mohimani, H., Molina-Santiago, C., Moore, B. S., Mullowney, M. W., Muskat, M., Nothias, L-F., O’Neill, E. C., Parkinson, E. I., Petras, D., Piel, J., Pierce, E. C., Pires, K., Reher, R., Romero, D., Roper, M. C., Rust, M., Saad, H., Saenz, C., Sanchez, L. M., Sørensen, S. J., Sosio, M., Süssmuth, R. D., Sweeney, D., Tahlan, K., Thomson, R. J., Tobias, N. J., Trindade-Silva, A. E., van Wezel, G. P., Wang, M., Weldon, K. C., Zhang, F., Ziemert, N., Duncan, K. R., Crüsemann, M., Rogers, S., Dorrestein, P. C., Medema, M. H. & van der Hooft, J. J. J., 2021, In: Nature Chemical Biology. 17, 4, p. 363-368
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
27 Citations (Scopus)
Advancements in capturing and mining mass spectrometry data are transforming natural products research
Jarmusch, S. A., van der Hooft, J. J. J., Dorrestein, P. C. & Jarmusch, A. K., 2021, In: Natural Product Reports. 38, 11, p. 2066-2082
Research output: Contribution to journal › Article › Academic › peer-review
2 Citations (Scopus)
Advances in decomposing complex metabolite mixtures using substructure- and network-based computational metabolomics approaches
Beniddir, M. A., Kang, K. B., Genta-jouve, G., Huber, F., Rogers, S. & Van Der Hooft, J. J. J., 1 Nov 2021, In: Natural Product Reports. 38, 11, p. 1967-1993
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
8 Citations (Scopus)

Collection of fragmentation mass spectra (all from GNPS, accessed on 2020-05-11)
Huber, F. (Creator), Ridder, L. (Creator), Verhoeven, S. (Creator), Spaaks, J. H. (Creator), Diblen, F. (Creator), Rogers, S. (Creator) & van der Hooft, J. (Creator), 11 Aug 2020
DOI: 10.5281/zenodo.3979010
Dataset
Data from: Assessing specialized metabolite diversity in the cosmopolitan plant genus Euphorbia L.
Ernst, M. (Creator), Nothias, L. F. (Creator), van der Hooft, J. (Creator), Silva, R. R. (Creator), Saslis-Lagoudakis, C. H. (Creator), Grace, O. M. (Creator), Martinez-Swatson, K. (Creator), Hassemer, G. (Creator), Funez, L. A. (Creator), Simonsen, H. T. (Creator), Medema, M. (Creator), Staerk, D. (Creator), Nilsson, N. (Creator), Lovato, P. (Creator), Dorrestein, P. C. (Creator) & Rønsted, N. (Creator), 17 Jul 2019
DOI: 10.5061/dryad.t513409
Dataset
Paired omics Data Platform projects
Verhoeven, S. (Creator), Schorn, M. (Contributor), Medema, M. (Contributor), Dorrestein, P. C. (Creator) & van der Hooft, J. (Creator), 1 Apr 2020
DOI: 10.5281/zenodo.3736430
Dataset
A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters
Witjes, L. (Creator), Kooke, R. (Creator), van der Hooft, J. (Creator), de Vos, R. (Creator), Keurentjes, J. (Creator), Medema, M. (Creator) & Nijveen, H. (Creator), Wageningen University & Research, 2 Apr 2019
DOI: 10.6084/m9.figshare.c.4456952
Dataset
Cleaned and pre-processed MS/MS datset (build from all positive ionmode spectra in GNPS) - zip file
Huber, F. (Creator), Ridder, L. (Creator), Verhoeven, S. (Creator), Spaaks, J. H. (Creator), Diblen, F. (Creator), Rogers, S. (Creator) & van der Hooft, J. (Creator), 10 Aug 2020
DOI: 10.5281/zenodo.3978118
Dataset

1 Oral presentation

A community-driven paired data platform to accelerate natural product mining
J.J.J. van der Hooft (Speaker)
12 Dec 2018
Activity: Talk or presentation › Oral presentation › Other

The universal language of the molecule : interview
Justin van der Hooft
14/10/21 → 15/10/21
2 Media contributions
Press/Media: Expert Comment › Professional

1 Active
4 Finished

DECIPHER
Meijer, D., Medema, M., de Ridder, D. & van der Hooft, J.
15/10/21 → …
Project: PhD
Integrated omics analysis for small molecule-mediated host-microbiome inteeractions (iOMEGA - integrated omics for metabolomics and genomics annotation)
van der Hooft, J., de Ridder, D. & Medema, M.
5/05/18 → 30/04/21
Project: PostDoc
Novel approaches to combine large-scale metabolomics and genomics data
van der Hooft, J. & Medema, M.
15/09/17 → 15/09/19
Project: PostDoc

File
Novel approaches to combine large-scale metabolomics and genomics data
van der Hooft, J., Medema, M. & Dorrestein, P. C.
15/09/17 → 14/09/19
Project: PostDoc
Metabolite identification: Combining high resolution UPLC-FTMS and HPLC-SPE-NMR in phytonutrients metabolomics.
van der Hooft, J., Bino, R., Vervoort, J., de Vos, R. & de Vries, S.
1/05/08 → 4/10/12
Project: PhD

Justin van der Hooft

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An isotopic labeling approach linking natural products with biosynthetic gene clusters

Fungi population metabolomics and molecular network study reveal novel biomarkers for early detection of aflatoxigenic Aspergillus species

A community resource for paired genomic and metabolomic data mining

Advancements in capturing and mining mass spectrometry data are transforming natural products research

Advances in decomposing complex metabolite mixtures using substructure- and network-based computational metabolomics approaches

Collection of fragmentation mass spectra (all from GNPS, accessed on 2020-05-11)

Data from: Assessing specialized metabolite diversity in the cosmopolitan plant genus Euphorbia L.

Paired omics Data Platform projects

A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters

Cleaned and pre-processed MS/MS datset (build from all positive ionmode spectra in GNPS) - zip file

A community-driven paired data platform to accelerate natural product mining

The universal language of the molecule : interview

DECIPHER

Integrated omics analysis for small molecule-mediated host-microbiome inteeractions (iOMEGA - integrated omics for metabolomics and genomics annotation)

Novel approaches to combine large-scale metabolomics and genomics data

Novel approaches to combine large-scale metabolomics and genomics data

Metabolite identification: Combining high resolution UPLC-FTMS and HPLC-SPE-NMR in phytonutrients metabolomics.

Justin van der Hooft

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