Jos Boekhorst

Search results

• Compositional profiling of porcine tonsillar microbiota around weaning in relation to abundance of Streptococcus suis

  Gaiser, R. (Creator), Kranenbarg-Stolte, E. (Creator), Boekhorst, J. (Creator), Timmerman, H. (Creator), Kleerebezem, M. (Creator), Wells, J. (Creator) & van Baarlen, P. (Creator), Wageningen University & Research, 7 Apr 2020

  DOI: 10.17026/dans-x8k-kuxs

  Dataset

• Modulation of gastro-intestinal permeability induced by 2 weeks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. M. E. (Creator), Boekhorst, J. (Creator), Smokvina, T. (Creator), Kleerebezem, M. (Creator) & Troost, F. J. (Creator), Wageningen University & Research, 9 Nov 2021

  DOI: 10.17026/dans-xnp-nkq8

  Dataset

• Omics and imaging combinatorial approach reveals butyrate-induced inflammatory effects in the zebrafish gut

  López Nadal, A. (Creator), Boekhorst, J. (Creator), Lute, C. (Creator), van den Berg, F. (Creator), Schorn-Alanjary, M. (Creator), Bergen Eriksen, T. (Creator), Peggs, D. (Creator), McGurk, C. (Creator), Sipkema, D. (Creator), Kleerebezem, M. (Creator), Wiegertjes, G. (Creator) & Brugman, S. (Creator), Wageningen University & Research, 13 Aug 2024

  DOI: 10.6084/m9.figshare.c.6591484

  Dataset

• Hybrid assemblies of Streptococcus suis isolates from transcriptomic study

  Fredriksen, S. (Creator), Ruijten, S. D. E. (Creator), Murray, G. G. R. (Creator), Juanpere-Borràs, M. (Creator), van Baarlen, P. (Creator), Boekhorst, J. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 4 Jul 2022

  https://www.ncbi.nlm.nih.gov/bioproject/855487

  Dataset

• TruCulture: Systemic immune adaptation and responsiveness induced by 2-wks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. M. E. (Creator), Boekhorst, J. (Creator), Smokvina, T. (Creator), Kleerebezem, M. (Creator) & Troost, F. J. (Creator), Wageningen University & Research, 1 Dec 2023

  DOI: 10.17026/dans-zym-ad8w

  Dataset

• Streptococcus suis transcriptome strain comparison

  Fredriksen, S. (Creator), Ruijten, S. D. E. (Creator), Murray, G. G. R. (Creator), Juanpere-Borràs, M. (Creator), van Baarlen, P. (Creator), Boekhorst, J. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 30 Jul 2022

  https://www.ncbi.nlm.nih.gov/bioproject/863843

  Dataset

• Streptococcus suis isolate genomes from tonsil microbiome study on European farms

  Frederiksen, S. (Creator), Neila-Ibáñez, C. (Creator), Hennig-Pauka, I. (Creator), Guan, X. (Creator), Dunkelberger, J. (Creator), Fernandes de Oliveira, I. F. (Creator), Ferrando, M. L. (Creator), Correa-Fiz, F. (Creator), Aragon, V. (Creator), Boekhorst, J. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 3 Jun 2022

  https://www.ncbi.nlm.nih.gov/bioproject/849547

  Dataset

• Metatranscriptome: Modulation of small intestinal microbial activity induced by 2 weeks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. M. E. (Creator), Boekhorst, J. (Creator), Smokvina, T. (Creator), Kleerebezem, M. (Creator) & Troost, F. J. (Creator), Wageningen University & Research, 23 Nov 2022

  DOI: 10.17026/dans-xvh-yww8

  Dataset

• Lactiplantibacillus plantarum strain:Lp900 Genome sequencing and assembly

  Führen, J. (Creator), Nijland, R. (Creator), Wels, M. (Creator), Boekhorst, J. (Creator) & Kleerebezem, M. (Creator), Wageningen University & Research, 16 Feb 2021

  https://www.ncbi.nlm.nih.gov/bioproject/630372

  Dataset

• Urine metabolites changes induced by 2-wks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. M. E. (Creator), Boekhorst, J. (Creator), Smokvina, T. (Creator), Kleerebezem, M. (Creator) & Troost, F. J. (Creator), Wageningen University & Research, 1 Dec 2023

  DOI: 10.17026/dans-2ad-cx47

  Dataset

• Biomarkers: Blood biomarkers and proteome response by 2-wks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. M. E. (Creator), Boekhorst, J. (Creator), Smokvina, T. (Creator), Kleerebezem, M. (Creator) & Troost, F. J. (Creator), Wageningen University & Research, 1 Dec 2023

  DOI: 10.17026/dans-xkm-6qks

  Dataset

• Metabolites Serum: Serum metabolites changes induced by 2-wks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. M. E. (Creator), Boekhorst, J. (Creator), Smokvina, T. (Creator), Kleerebezem, M. (Creator) & Troost, F. J. (Creator), Wageningen University & Research, 1 Dec 2023

  DOI: 10.17026/dans-x37-9fcp

  Dataset

• Environmental and maternal factors shaping tonsillar microbiota development in piglets

  Fredriksen, S. (Creator), Guan, X. (Creator), Boekhorst, J. (Creator), Molist, F. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 27 Sept 2022

  DOI: 10.6084/m9.figshare.c.6218396

  Dataset

• 16S: Modulation of small intestinal microbial composition induced by 2 weeks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. M. E. (Creator), Boekhorst, J. (Creator), Smokvina, T. (Creator), Kleerebezem, M. (Creator) & Troost, F. J. (Creator), Wageningen University & Research, Nov 2021

  DOI: 10.17026/dans-xhw-dhpr

  Dataset

• Determine the L. rhamnosus CNCM I-3690 survival, adaptation and small bowel microbiome impact in human in response to dietary interventions

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. (Creator), Boekhorst, J. (Creator), Chervaux, C. (Creator), Smokvina, T. (Creator), Troost, F. (Creator) & Kleerebezem, M. (Creator), Wageningen University & Research, 6 Apr 2023

  https://www.ebi.ac.uk/ena/browser/view/PRJEB61087

  Dataset

• Shotgun and amplicon sequencing reads from piglet tonsil microbiome study

  Frederiksen, S. (Creator), Neila-Ibáñez, C. (Creator), Hennig-Pauka, I. (Creator), Guan, X. (Creator), Dunkelberger, J. (Creator), Fernandes de Oliveira, I. F. (Creator), Ferrando, M. L. (Creator), Correa-Fiz, F. (Creator), Aragon, V. (Creator), Boekhorst, J. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 30 Jun 2022

  https://www.ncbi.nlm.nih.gov/bioproject/854341

  Dataset

• Data: Longitudinal study on the tonsillar microbiota of piglets

  Fredriksen, S. (Creator), Guan, X. (Creator), Boekhorst, J. (Creator), Molist, F. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 18 Nov 2021

  DOI: 10.17026/dans-xxb-56zp

  Dataset

• PBMCs: Systemic immune adaptation and blood transcriptional changes induced by 2-wks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. M. E. (Creator), Boekhorst, J. (Creator), Smokvina, T. (Creator), Kleerebezem, M. (Creator) & Troost, F. J. (Creator), Wageningen University & Research, 1 Dec 2023

  DOI: 10.17026/dans-xnr-7rch

  Dataset

• survival of rhamnosus in the human GI tract

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. (Creator), Boekhorst, J. (Creator), Chervaux, C. (Creator), Smokvina, T. (Creator), Troost, F. (Creator) & Kleerebezem, M. (Creator), Wageningen University & Research, 4 Apr 2023

  https://www.ebi.ac.uk/ena/browser/view/PRJEB61139

  Dataset

• Dietary calcium impacts gut microbiome

  Führen, J. (Creator), Schwalbe, M. (Creator), Boekhorst, J. (Creator), Rosch, C. (Creator), Schols, H. (Creator) & Kleerebezem, M. (Creator), Wageningen University, 1 May 2021

  https://www.ebi.ac.uk/ena/browser/view/PRJEB43382

  Dataset

• Data underlying the publication: "A mammalian commensal of the oropharyngeal cavity produces antibiotic and antiviral valinomycin in vivo"

  Gaiser, R. (Creator), Ferrando, L. (Creator), Oddo, A. (Creator), Pereira, M. (Creator), Boekhorst, J. (Creator), Guan, X. (Creator), Molist, F. (Creator), Fernandez Gutierrez, M. (Creator), Fredriksen, S. (Creator), Bryant, C. E. (Creator), Petras, D. (Creator), Dorrestein, P. C. (Creator), Boeren, S. (Creator), Medema, M. (Creator), Hill, C. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 28 Sept 2023

  DOI: 10.17026/dans-zf3-7tt4

  Dataset

• Modulation of small intestinal small chain fatty acid profile induced by 2 weeks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. M. E. (Creator), Boekhorst, J. (Creator), Smokvina, T. (Creator), Kleerebezem, M. (Creator) & Troost, F. J. (Creator), Wageningen University & Research, 11 Nov 2021

  DOI: 10.17026/dans-z3q-vvz4

  Dataset