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Research Output 2002 2019

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Article
2019

Genetic correlations between growth performance and carcass traits of purebred and crossbred pigs raised in tropical and temperate climates1

Godinho, R. M., Bergsma, R., Silva, F. F., Sevillano, C. A., Knol, E. F., Komen, H., Guimarães, S. E. F., Lopes, M. S. & Bastiaansen, J. W. M., 3 Sep 2019, In : Journal of Animal Science. 97, 9, p. 3648-3657 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

purebreds
Climate
carcass characteristics
genetic correlation
growth performance

Response to a selection index including environmental costs and risk preferences of producers

Ali, B. M., Bastiaansen, J. W. M., de Mey, Y. & Oude Lansink, A. G. J. M., 1 Jan 2019, In : Journal of Animal Science. 97, 1, p. 156-171

Research output: Contribution to journalArticleAcademicpeer-review

selection index
economic valuation
Economics
dams (mothers)
Costs and Cost Analysis

Use of geographic information system tools to predict animal breed suitability for different agro-ecological zones

Lozano-Jaramillo, M., Bastiaansen, J. W. M., Dessie, T. & Komen, H., Jul 2019, In : Animal. 13, 7, p. 1536-1543

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
agroecological zones
geographic information systems
breeds
animals
environmental factors
2018
3 Citations (Scopus)

A stochastic bio-economic pig farm model to assess the impact of innovations on farm performance

Ali, B. M., Berentsen, P. B. M., Bastiaansen, J. W. M. & Oude Lansink, A., Apr 2018, In : Animal. 12, 4, p. 819-830 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

bioeconomics
coproducts
profits and margins
finishing
farms
2 Citations (Scopus)
Open Access
livestock breeding
economic valuation
Breeding
Swine
Economics
3 Citations (Scopus)

Genetic correlations between feed efficiency traits, and growth performance and carcass traits in purebred and crossbred pigs

Godinho, R. M., Bergsma, R., Silva, F. F., Sevillano, C. A., Knol, E. F., Lopes, M. S., Lopes, P. S., Bastiaansen, J. W. M. & Guimarães, S. E. F., 3 Apr 2018, In : Journal of Animal Science. 96, 3, p. 817-829

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
purebreds
carcass characteristics
genetic correlation
growth performance
crossbreds
2 Citations (Scopus)

Genotype by feed interaction for feed efficiency and growth performance traits in pigs

Godinho, R. M., Bastiaansen, J. W. M., Sevillano, C. A., Silva, F. F., Guimarães, S. E. F. & Bergsma, R., 29 Sep 2018, In : Journal of Animal Science. 96, 10, p. 4125-4135

Research output: Contribution to journalArticleAcademicpeer-review

growth performance
Swine
feed conversion
Genotype
Diet

On farm observations to increase genetic gain in breeding schemes for village poultry production - A simulation study

Chu, T. T., Bastiaansen, J. W. M., Norberg, E. & Berg, P., 14 Nov 2018, In : Acta Agriculturae Scandinavica A: Animal Sciences. 68, 1, p. 1-10 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

poultry production
Poultry
genetic improvement
Breeding
villages
6 Citations (Scopus)
Open Access
Livestock
selection response
livestock
marker-assisted selection
Multifactorial Inheritance
2 Citations (Scopus)

Weighted single-step GWAS and gene network analysis reveal new candidate genes for semen traits in pigs

Marques, D. B. D., Bastiaansen, J. W. M., Broekhuijse, M. L. W. J., Lopes, M. S., Knol, E. F., Harlizius, B., Guimarães, S. E. F., Silva, F. F. & Lopes, P. S., 6 Aug 2018, In : Genetics Selection Evolution. 50, 1, 40.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Regulatory Networks
Quantitative Trait Loci
Genome-Wide Association Study
network analysis
Semen
2017
9 Citations (Scopus)
Nutrition
economic impact
pig
environmental impact
Land use
6 Citations (Scopus)

Genetic parameters for semen quality and quantity traits in five pig lines

Marques, D. B. D., Lopes, M. S., Broekhuijse, M. L. W. J., Guimarães, S. E. F., Kno, E. F., Bastiaansen, J. W. M., Silva, F. & Lopes, P. S., 1 Oct 2017, In : Journal of Animal Science. 95, 10, p. 4251-4259

Research output: Contribution to journalArticleAcademicpeer-review

Semen Analysis
Sperm Motility
Semen
semen
heritability
7 Citations (Scopus)

Genomic evaluation for a three-way crossbreeding system considering breed-of-origin of alleles

Sevillano del Aguila, C., Vandenplas, J., Bastiaansen, J. W. M., Bergsma, R. & Calus, M. P. L., 23 Oct 2017, In : Genetics, Selection, Evolution. 49, 14 p., 75.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genetic Hybridization
genomics
allele
Alleles
alleles
8 Citations (Scopus)

Genomic selection for crossbred performance accounting for breed-specific effects

Soares Lopes, M., Bovenhuis, H., Marubayashi Hidalgo, A., Van Arendonk, J. A. M., Knol, E. F. & Bastiaansen, J. W. M., 2017, In : Genetics, Selection, Evolution. 49, 1, 51.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Litter Size
marker-assisted selection
genomics
crossbreds
Alleles
9 Citations (Scopus)

Using markers with large effect in genetic and genomic predictions

Soares Lopes, M., Bovenhuis, H., van Son, M., Nordbø, Grindflek, E. H., Knol, E. F. & Bastiaansen, J. W. M., 2017, In : Journal of Animal Science. 95, 1, p. 59-71

Research output: Contribution to journalArticleAcademicpeer-review

Genome-Wide Association Study
Single Nucleotide Polymorphism
genomics
prediction
marker-assisted selection
2016
3 Citations (Scopus)

Accounting for genetic architecture in single- and multipopulation genomic prediction using weights from genomewide association studies in pigs

Veroneze, R., Lopes, P. S., Lopes, M. S., Hidalgo, A. M., Guimarães, S. E. F., Harlizius, B., Knol, E. F., van Arendonk, J. A. M., Silva, F. F. & Bastiaansen, J. W. M., 2016, In : Journal of Animal Breeding and Genetics. 133, 3, p. 187-196

Research output: Contribution to journalArticleAcademicpeer-review

Genome-Wide Association Study
Swine
genomics
Weights and Measures
swine
6 Citations (Scopus)

Accuracy of genomic prediction of purebreds for cross bred performance in pigs

Marubayashi Hidalgo, A., Bastiaansen, J. W. M., Lopes, M. S., Calus, M. P. L. & de Koning, D. J., 2016, In : Journal of Animal Breeding and Genetics. 133, 6, p. 443-451

Research output: Contribution to journalArticleAcademicpeer-review

Genetic Crosses
purebreds
Breeding
crossbreds
Swine
20 Citations (Scopus)

Accuracy of genomic prediction using imputed whole-genome sequence data in white layers

Heidaritabar, M., Calus, M. P. L., Megens, H. J., Vereijken, A., Groenen, M. A. M. & Bastiaansen, J. W. M., 2016, In : Journal of Animal Breeding and Genetics. p. 167-179 3.

Research output: Contribution to journalArticleAcademicpeer-review

Single Nucleotide Polymorphism
Genome
genomics
genome
prediction
11 Citations (Scopus)

Assigning breed origin to alleles in crossbred animals

Vandenplas, J., Calus, M. P. L., Sevillano del Aguila, C., Windig, J. J. & Bastiaansen, J. W. M., 2016, In : Genetics, Selection, Evolution. 48, 22 p., 61.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
crossbreds
allele
Alleles
alleles
breeds
7 Citations (Scopus)

Dwarfism with joint laxity in Friesian horses is associated with a splice site mutation in B4GALT7

Leegwater, P. A., Vos-Loohuis, M., Ducro, B. J., Boegheim, I. J., Bastiaansen, J. W. M., Dibbits, B. W. & Schurink, A., 2016, In : BMC Genomics. 17, 1, 839.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Joint Instability
Dwarfism
Horses
Mutation
Growth Plate
11 Citations (Scopus)

Empirical determination of breed-of-origin of alleles in three-breed cross pigs

Sevillano del Aguila, C., Vandenplas, J., Bastiaansen, J. W. M. & Calus, M. P. L., 2016, In : Genetics, Selection, Evolution. 48, 12 p., 55.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
pig
allele
Swine
Alleles
alleles
5 Citations (Scopus)

Genome-wide association study reveals regions associated with gestation length in two pig populations

Hidalgo, A. M., Lopes, M. S., Harlizius, B. & Bastiaansen, J. W. M., 2016, In : Animal Genetics. 47, 2, p. 223-226

Research output: Contribution to journalArticleAcademicpeer-review

Genome-Wide Association Study
Swine
single nucleotide polymorphism
pregnancy
Single Nucleotide Polymorphism

Genomic prediction of crossbred performance

Harlizius, B., Lopes, M. S., Vandenplas, J., Sevillano Del Aguila, C. A. & Bastiaansen, J. W. M., 2016, In : Journal of Animal Science. 99, suppl. 5, p. 142-143

Research output: Contribution to journalArticleAcademic

5 Citations (Scopus)

Genomic prediction of growth in pigs based on a model including additive and dominance effects

Lopes, M. S., Bastiaansen, J. W. M., Janss, L., Knol, E. F. & Bovenhuis, H., 2016, In : Journal of Animal Breeding and Genetics. p. 180-186 133.

Research output: Contribution to journalArticleAcademicpeer-review

dominance (genetics)
Breeding
breeding value
Swine
Phenotype
9 Citations (Scopus)

Impact of fitting dominance and additive effects on accuracy of genomic prediction of breeding values in layers

Heidaritabar, M., Wolc, A., Arango, J., Zeng, J., Settar, P., Fulton, J. E., O'Sullivan, N. P., Bastiaansen, J. W. M., Fernando, R. L., Garrick, D. J. & Dekkers, J. C. M., 2016, In : Journal of Animal Breeding and Genetics. 133, p. 334-346

Research output: Contribution to journalArticleAcademicpeer-review

breeding value
additive effect
dominance (genetics)
Breeding
genomics
19 Citations (Scopus)

Revealing new candidate genes for reproductive traits in pigs: Combining Bayesian GWAS and functional pathways

Verardo, L. L., Silva, F. F., Lopes, M. S., Madsen, O., Bastiaansen, J. W. M., Knol, E. F., Kelly, M., Varona, L., Lopes, P. S. & Guimarães, S. E. F., 2016, In : Genetics, Selection, Evolution. 48, 1, 189.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome-Wide Association Study
reproductive traits
pig
teats
piglets
2015
5 Citations (Scopus)

Accuracy of genome-enabled prediction exploring purebred and crossbred pig populations

Veroneze, R., Soares Lopes, M., Marubayashi Hidalgo, A., Guimaraes, S. E. F., Silva, F. F., Harlizius, B., Lopes, P. S., Knol, E. F., van Arendonk, J. A. M. & Bastiaansen, J. W. M., 2015, In : Journal of Animal Science. 93, 10, p. 4684-4691

Research output: Contribution to journalArticleAcademicpeer-review

purebreds
crossbreds
Swine
Genome
swine
7 Citations (Scopus)

Accuracy of genomic prediction using deregressed breeding values estimated from purebred and crossbred offspring phenotypes in pigs

Marubayashi Hidalgo, A., Bastiaansen, J. W. M., Soares Lopes, M., Veroneze, R., Groenen, M. A. M. & de Koning, D. J., 2015, In : Journal of Animal Science. 93, 7, p. 3313-3321

Research output: Contribution to journalArticleAcademicpeer-review

purebreds
breeding value
Breeding
crossbreds
Swine
6 Citations (Scopus)

Accuracy of imputation using the most common sires as reference population in layer chickens

Heidaritabar, M., Calus, M. P. L., Vereijken, A., Groenen, M. A. M. & Bastiaansen, J. W. M., 2015, In : BMC Genetics. 16, 14 p., 101.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Single Nucleotide Polymorphism
Chickens
Gene Frequency
Population
Population Density
22 Citations (Scopus)

Accuracy of Predicted Genomic Breeding Values in Purebred and Crossbred Pigs

Marubayashi Hidalgo, A., Bastiaansen, J. W. M., Soares Lopes, M., Harlizius, B., Groenen, M. A. M. & de Koning, D. J., 2015, In : G3 : Genes Genomes Genetics. 5, 8, p. 1575-1583

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Breeding
Swine
Population
Insemination
Pedigree
7 Citations (Scopus)

A nonsense mutation in B3GALNT2 is concordant with hydrocephalus in Friesian horses

Ducro, B. J., Schurink, A., Bastiaansen, J. W. M., Boegheim, I. J. M., van Steenbeek, F. G., Vos-Loohuis, M., Nijman, I. J., Monroe, G. R., Hellinga, I., Dibbits, B. W., Back, W. & Leegwater, P. A. J., 2015, In : BMC Genomics. 16, 9 p., 761.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Nonsense Codon
Hydrocephalus
Horses
Mutation
Population
11 Citations (Scopus)

Artificial selection on introduced Asian haplotypes shaped the genetic architecture in european commercial pigs

Bosse, M., Soares Lopes, M., Madsen, O., Megens, H. J., Crooijmans, R. P. M. A., Frantz, L. A. F., Harlizius, B., Bastiaansen, J. W. M. & Groenen, M. A. M., 2015, In : Proceedings of the Royal Society. B: Biological Sciences. 282, 1821, 9 p., 20152019.

Research output: Contribution to journalArticleAcademicpeer-review

artificial selection
pig
Haplotypes
haplotypes
Swine
17 Citations (Scopus)

Bayesian GWAS and network analysis revealed new candidate genes for number of teats in pigs

Verardo, L. L., Silva, F. F., Varona, L., Resende, R., Bastiaansen, J. W. M., Lopes, P. S. & Guimaraes, S. E. F., 2015, In : Journal of Applied Genetics. 56, 1, p. 123-132

Research output: Contribution to journalArticleAcademicpeer-review

Genome-Wide Association Study
Single Nucleotide Polymorphism
Swine
Genes
Gene Regulatory Networks
18 Citations (Scopus)

Estimation of Additive, Dominance and Imprinting Genetic Variance Using Genomic Data

Soares Lopes, M., Bastiaansen, J. W. M., Janss, L., Knol, E. F. & Bovenhuis, H., 2015, In : G3 : Genes Genomes Genetics. 5, 12, p. 2629-2637

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genomic Imprinting
Single Nucleotide Polymorphism
Chromosomes
Livestock
Pedigree
6 Citations (Scopus)

Genome wide association study using deregressed breeding values for cryptorchidism and scrotal/inguinal hernia in two pig lines

Sevillano Del Aguila, C. A., Soares Lopes, M., Harlizius, B., Hanenberg, E. H. A. T., Knol, E. F. & Bastiaansen, J. W. M., 2015, In : Genetics, Selection, Evolution. 47, 8 p., 18.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
cryptorchidism
Cryptorchidism
hernia
Inguinal Hernia
Genome-Wide Association Study
2 Citations (Scopus)

Prior genetic architecture impacting genomic regions under selection: an example using genomic selection in two poultry breeds

Zhang, X., Misztal, I., Heidaritabar, M., Bastiaansen, J. W. M., Borg, R. & Okimoto, R., 2015, In : Livestock Science. 171, p. 1-11

Research output: Contribution to journalArticleAcademicpeer-review

poultry breeds
Poultry
Gene Frequency
marker-assisted selection
breeds
2014
20 Citations (Scopus)

A Genome-Wide Association Study Reveals Dominance Effects on Number of Teats in Pigs

Lopes, M. S., Bastiaansen, J. W. M., Harlizius, B., Knol, E. F. & Bovenhuis, H., 2014, In : PLoS ONE. 9, 8, 8 p., e105867.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome-Wide Association Study
teats
dominance (genetics)
Single Nucleotide Polymorphism
Swine
1 Citation (Scopus)

Asian low-androstenone haplotype on pig chromosome 6 does not unfavorably affect production and reproduction traits.

Hidalgo, A. M., Bastiaansen, J. W. M., Harlizius, B., Knol, E. F., Lopes, M. S., De Koning, D. J. & Groenen, M., 2014, In : Animal Genetics. 45, 6, p. 874-877

Research output: Contribution to journalArticleAcademicpeer-review

Chromosomes, Human, Pair 6
Haplotypes
Reproduction
haplotypes
Swine
1 Citation (Scopus)
Open Access
DNA Sequence Analysis
Genome
Population
Physiological Phenomena
Chromosomes, Human, Pair 14
17 Citations (Scopus)

Linkage disequilibrium patterns and persistence of phase in purebred and crossbred pig (Sus scrofa) populations

Veroneze, R., Bastiaansen, J. W. M., Knol, E. F., Guimaraes, S. E. F., Silva, F. F., Harlizius, B., Lopes, M. S. & Lopes, P. S., 2014, In : BMC Genetics. 15, 9 p., 126.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sus scrofa
Linkage Disequilibrium
Swine
Quantitative Trait Loci
Population
5 Citations (Scopus)
Open Access
Chromosomes, Human, Pair 6
Haplotypes
Testis
Alleles
Quantitative Trait Loci
22 Citations (Scopus)

Sire evaluation for total number born in pigs using a genomic reaction norms approach

Silva, F. F., Mulder, H. A., Knol, E. F., Lopes, M. S., Guimaraes, S. E. F., Lopes, P. S., Mathur, P. K., Viana, J. M. S. & Bastiaansen, J. W. M., 2014, In : Journal of Animal Science. 92, 9, p. 3825-3834

Research output: Contribution to journalArticleAcademicpeer-review

sire evaluation
Swine
genomics
swine
Single Nucleotide Polymorphism
16 Citations (Scopus)
Open Access
purebreds
genetic correlation
Breeding
crossbreds
sires
11 Citations (Scopus)

Systematic differences in the response of genetic variation to pedigree and genome-based selection methods

Heidaritabar, M., Vereijken, A., Muir, W. M., Meuwissen, T. H. E., Cheng, H., Megens, H. J. W. C., Groenen, M. & Bastiaansen, J. W. M., 2014, In : Heredity. 113, p. 503-513

Research output: Contribution to journalArticleAcademicpeer-review

Pedigree
Genome
Gene Frequency
Chickens
Breeding
2013
69 Citations (Scopus)

Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication

Paudel, Y., Madsen, O., Megens, H. J. W. C., Frantz, L. A. F., Bosse, M., Bastiaansen, J. W. M., Crooijmans, R. P. M. A. & Groenen, M., 2013, In : BMC Genomics. 14, 449.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sus scrofa
Swine
Genome
Genes
Demography
11 Citations (Scopus)

Fine mapping and single nucleotide polymorphism effects estimation on pig chromosomes 1, 4, 7, 8, 17 and X

Hidalgo, A. M., Lopes, P. S., Paixao, M., Silva, F., Bastiaansen, J. W. M. & Paiva, A., 2013, In : Genetics and Molecular Biology. 36, 4, p. 511-519

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chromosomes, Human, Pair 4
Chromosomes, Human, Pair 1
Quantitative Trait Loci
Single Nucleotide Polymorphism
Swine
5 Citations (Scopus)

Genetic parameters for natural antibody isotype titers in milk of Dutch Holstein-Friesians

Wijga, S., Bovenhuis, H., Bastiaansen, J. W. M., van Arendonk, J. A. M., Ploegaert, T. C. W., Tijhaar, E. & van der Poel, J. J., 2013, In : Animal Genetics. 44, 5, p. 485-492

Research output: Contribution to journalArticleAcademicpeer-review

Milk
Holstein
milk
antibodies
Antibodies
11 Citations (Scopus)

Genome-wide association study of insect bite hypersensitivity in Dutch Shetland pony mares

Schurink, A., Ducro, B. J., Bastiaansen, J. W. M., Frankena, K. & van Arendonk, J. A. M., 2013, In : Animal Genetics. 44, 1, p. 44-52

Research output: Contribution to journalArticleAcademicpeer-review

Insect Bites and Stings
Genome-Wide Association Study
hypersensitivity
mares
Hypersensitivity
2012
33 Citations (Scopus)

Genome-wide associations for fertility traits in Holstein–Friesian dairy cows using data from experimental research herds in four European countries

Berry, D. P., Bastiaansen, J. W. M., Veerkamp, R. F., Wijga, S., Wall, E., Berglund, B. & Calus, M. P. L., 2012, In : Animal. 6, 8, p. 1206-1215

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
corpus luteum
progesterone
heritability
Holstein
dairy cows
16 Citations (Scopus)

Genomic associations with somatic cell score in first-lactation Holstein cows

Wijga, S., Bastiaansen, J. W. M., Wall, E., Strandberg, E. & de Haas, Y., 2012, In : Journal of Dairy Science. 95, 2, p. 899-908

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
somatic cells
Lactation
single nucleotide polymorphism
Single Nucleotide Polymorphism
Holstein