20022020

Research output per year

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Article
2019

Genetic correlations between growth performance and carcass traits of purebred and crossbred pigs raised in tropical and temperate climates1

Godinho, R. M., Bergsma, R., Silva, F. F., Sevillano, C. A., Knol, E. F., Komen, H., Guimarães, S. E. F., Lopes, M. S. & Bastiaansen, J. W. M., 3 Sep 2019, In : Journal of Animal Science. 97, 9, p. 3648-3657 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Optimized grouping to increase accuracy of prediction of breeding values based on group records in genomic selection breeding programs

Chu, T. T., Bastiaansen, J. W. M., Berg, P. & Komen, H., 15 Nov 2019, In : Genetics Selection Evolution. 51, 1, 12 p., 64.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Response to a selection index including environmental costs and risk preferences of producers

Ali, B. M., Bastiaansen, J. W. M., de Mey, Y. & Oude Lansink, A. G. J. M., 1 Jan 2019, In : Journal of Animal Science. 97, 1, p. 156-171

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Use of genomic information to exploit genotype-by-environment interactions for body weight of broiler chicken in bio-secure and production environments

Chu, T. T., Bastiaansen, J. W. M., Berg, P., Romé, H., Marois, D., Henshall, J. & Jensen, J., 18 Sep 2019, In : Genetics Selection Evolution. 51, 1, 50.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Use of geographic information system tools to predict animal breed suitability for different agro-ecological zones

Lozano-Jaramillo, M., Bastiaansen, J. W. M., Dessie, T. & Komen, H., Jul 2019, In : Animal. 13, 7, p. 1536-1543

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Using phenotypic distribution models to predict livestock performance

Lozano-Jaramillo, M., Alemu, S. W., Dessie, T., Komen, H. & Bastiaansen, J. W. M., 25 Oct 2019, In : Scientific Reports. 9, 1, 15371.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2018

A stochastic bio-economic pig farm model to assess the impact of innovations on farm performance

Ali, B. M., Berentsen, P. B. M., Bastiaansen, J. W. M. & Oude Lansink, A., Apr 2018, In : Animal. 12, 4, p. 819-830 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)
Open Access
3 Citations (Scopus)

Genetic correlations between feed efficiency traits, and growth performance and carcass traits in purebred and crossbred pigs

Godinho, R. M., Bergsma, R., Silva, F. F., Sevillano, C. A., Knol, E. F., Lopes, M. S., Lopes, P. S., Bastiaansen, J. W. M. & Guimarães, S. E. F., 3 Apr 2018, In : Journal of Animal Science. 96, 3, p. 817-829

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

Genotype by feed interaction for feed efficiency and growth performance traits in pigs

Godinho, R. M., Bastiaansen, J. W. M., Sevillano, C. A., Silva, F. F., Guimarães, S. E. F. & Bergsma, R., 29 Sep 2018, In : Journal of Animal Science. 96, 10, p. 4125-4135

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

On farm observations to increase genetic gain in breeding schemes for village poultry production - A simulation study

Chu, T. T., Bastiaansen, J. W. M., Norberg, E. & Berg, P., 14 Nov 2018, In : Acta Agriculturae Scandinavica A: Animal Sciences. 68, 1, p. 1-10 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access
8 Citations (Scopus)

Weighted single-step GWAS and gene network analysis reveal new candidate genes for semen traits in pigs

Marques, D. B. D., Bastiaansen, J. W. M., Broekhuijse, M. L. W. J., Lopes, M. S., Knol, E. F., Harlizius, B., Guimarães, S. E. F., Silva, F. F. & Lopes, P. S., 6 Aug 2018, In : Genetics Selection Evolution. 50, 1, 40.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)
2017
12 Citations (Scopus)

Genetic parameters for semen quality and quantity traits in five pig lines

Marques, D. B. D., Lopes, M. S., Broekhuijse, M. L. W. J., Guimarães, S. E. F., Kno, E. F., Bastiaansen, J. W. M., Silva, F. & Lopes, P. S., 1 Oct 2017, In : Journal of Animal Science. 95, 10, p. 4251-4259

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

Genomic evaluation for a three-way crossbreeding system considering breed-of-origin of alleles

Sevillano del Aguila, C., Vandenplas, J., Bastiaansen, J. W. M., Bergsma, R. & Calus, M. P. L., 23 Oct 2017, In : Genetics, Selection, Evolution. 49, 14 p., 75.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Genomic selection for crossbred performance accounting for breed-specific effects

Soares Lopes, M., Bovenhuis, H., Marubayashi Hidalgo, A., Van Arendonk, J. A. M., Knol, E. F. & Bastiaansen, J. W. M., 2017, In : Genetics, Selection, Evolution. 49, 1, 51.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Using markers with large effect in genetic and genomic predictions

Soares Lopes, M., Bovenhuis, H., van Son, M., Nordbø, Grindflek, E. H., Knol, E. F. & Bastiaansen, J. W. M., 2017, In : Journal of Animal Science. 95, 1, p. 59-71

Research output: Contribution to journalArticleAcademicpeer-review

13 Citations (Scopus)
2016

Accounting for genetic architecture in single- and multipopulation genomic prediction using weights from genomewide association studies in pigs

Veroneze, R., Lopes, P. S., Lopes, M. S., Hidalgo, A. M., Guimarães, S. E. F., Harlizius, B., Knol, E. F., van Arendonk, J. A. M., Silva, F. F. & Bastiaansen, J. W. M., 2016, In : Journal of Animal Breeding and Genetics. 133, 3, p. 187-196

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Accuracy of genomic prediction of purebreds for cross bred performance in pigs

Marubayashi Hidalgo, A., Bastiaansen, J. W. M., Lopes, M. S., Calus, M. P. L. & de Koning, D. J., 2016, In : Journal of Animal Breeding and Genetics. 133, 6, p. 443-451

Research output: Contribution to journalArticleAcademicpeer-review

8 Citations (Scopus)

Accuracy of genomic prediction using imputed whole-genome sequence data in white layers

Heidaritabar, M., Calus, M. P. L., Megens, H. J., Vereijken, A., Groenen, M. A. M. & Bastiaansen, J. W. M., 2016, In : Journal of Animal Breeding and Genetics. p. 167-179 3.

Research output: Contribution to journalArticleAcademicpeer-review

22 Citations (Scopus)

Assigning breed origin to alleles in crossbred animals

Vandenplas, J., Calus, M. P. L., Sevillano del Aguila, C., Windig, J. J. & Bastiaansen, J. W. M., 2016, In : Genetics, Selection, Evolution. 48, 22 p., 61.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
14 Citations (Scopus)

Dwarfism with joint laxity in Friesian horses is associated with a splice site mutation in B4GALT7

Leegwater, P. A., Vos-Loohuis, M., Ducro, B. J., Boegheim, I. J., Bastiaansen, J. W. M., Dibbits, B. W. & Schurink, A., 2016, In : BMC Genomics. 17, 1, 839.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
13 Citations (Scopus)

Empirical determination of breed-of-origin of alleles in three-breed cross pigs

Sevillano del Aguila, C., Vandenplas, J., Bastiaansen, J. W. M. & Calus, M. P. L., 2016, In : Genetics, Selection, Evolution. 48, 12 p., 55.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
13 Citations (Scopus)

Genome-wide association study reveals regions associated with gestation length in two pig populations

Hidalgo, A. M., Lopes, M. S., Harlizius, B. & Bastiaansen, J. W. M., 2016, In : Animal Genetics. 47, 2, p. 223-226

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Genomic prediction of crossbred performance

Harlizius, B., Lopes, M. S., Vandenplas, J., Sevillano Del Aguila, C. A. & Bastiaansen, J. W. M., 2016, In : Journal of Animal Science. 99, suppl. 5, p. 142-143

Research output: Contribution to journalArticleAcademic

Genomic prediction of growth in pigs based on a model including additive and dominance effects

Lopes, M. S., Bastiaansen, J. W. M., Janss, L., Knol, E. F. & Bovenhuis, H., 2016, In : Journal of Animal Breeding and Genetics. p. 180-186 133.

Research output: Contribution to journalArticleAcademicpeer-review

9 Citations (Scopus)

Impact of fitting dominance and additive effects on accuracy of genomic prediction of breeding values in layers

Heidaritabar, M., Wolc, A., Arango, J., Zeng, J., Settar, P., Fulton, J. E., O'Sullivan, N. P., Bastiaansen, J. W. M., Fernando, R. L., Garrick, D. J. & Dekkers, J. C. M., 2016, In : Journal of Animal Breeding and Genetics. 133, p. 334-346

Research output: Contribution to journalArticleAcademicpeer-review

12 Citations (Scopus)

Revealing new candidate genes for reproductive traits in pigs: Combining Bayesian GWAS and functional pathways

Verardo, L. L., Silva, F. F., Lopes, M. S., Madsen, O., Bastiaansen, J. W. M., Knol, E. F., Kelly, M., Varona, L., Lopes, P. S. & Guimarães, S. E. F., 2016, In : Genetics, Selection, Evolution. 48, 1, 189.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
24 Citations (Scopus)
2015

Accuracy of genome-enabled prediction exploring purebred and crossbred pig populations

Veroneze, R., Soares Lopes, M., Marubayashi Hidalgo, A., Guimaraes, S. E. F., Silva, F. F., Harlizius, B., Lopes, P. S., Knol, E. F., van Arendonk, J. A. M. & Bastiaansen, J. W. M., 2015, In : Journal of Animal Science. 93, 10, p. 4684-4691

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Accuracy of genomic prediction using deregressed breeding values estimated from purebred and crossbred offspring phenotypes in pigs

Marubayashi Hidalgo, A., Bastiaansen, J. W. M., Soares Lopes, M., Veroneze, R., Groenen, M. A. M. & de Koning, D. J., 2015, In : Journal of Animal Science. 93, 7, p. 3313-3321

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

Accuracy of imputation using the most common sires as reference population in layer chickens

Heidaritabar, M., Calus, M. P. L., Vereijken, A., Groenen, M. A. M. & Bastiaansen, J. W. M., 2015, In : BMC Genetics. 16, 14 p., 101.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)

Accuracy of Predicted Genomic Breeding Values in Purebred and Crossbred Pigs

Marubayashi Hidalgo, A., Bastiaansen, J. W. M., Soares Lopes, M., Harlizius, B., Groenen, M. A. M. & de Koning, D. J., 2015, In : G3 : Genes Genomes Genetics. 5, 8, p. 1575-1583

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
23 Citations (Scopus)

A nonsense mutation in B3GALNT2 is concordant with hydrocephalus in Friesian horses

Ducro, B. J., Schurink, A., Bastiaansen, J. W. M., Boegheim, I. J. M., van Steenbeek, F. G., Vos-Loohuis, M., Nijman, I. J., Monroe, G. R., Hellinga, I., Dibbits, B. W., Back, W. & Leegwater, P. A. J., 2015, In : BMC Genomics. 16, 9 p., 761.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Artificial selection on introduced Asian haplotypes shaped the genetic architecture in european commercial pigs

Bosse, M., Soares Lopes, M., Madsen, O., Megens, H. J., Crooijmans, R. P. M. A., Frantz, L. A. F., Harlizius, B., Bastiaansen, J. W. M. & Groenen, M. A. M., 2015, In : Proceedings of the Royal Society. B: Biological Sciences. 282, 1821, 9 p., 20152019.

Research output: Contribution to journalArticleAcademicpeer-review

13 Citations (Scopus)

Bayesian GWAS and network analysis revealed new candidate genes for number of teats in pigs

Verardo, L. L., Silva, F. F., Varona, L., Resende, R., Bastiaansen, J. W. M., Lopes, P. S. & Guimaraes, S. E. F., 2015, In : Journal of Applied Genetics. 56, 1, p. 123-132

Research output: Contribution to journalArticleAcademicpeer-review

19 Citations (Scopus)

Estimation of Additive, Dominance and Imprinting Genetic Variance Using Genomic Data

Soares Lopes, M., Bastiaansen, J. W. M., Janss, L., Knol, E. F. & Bovenhuis, H., 2015, In : G3 : Genes Genomes Genetics. 5, 12, p. 2629-2637

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
21 Citations (Scopus)

Genome wide association study using deregressed breeding values for cryptorchidism and scrotal/inguinal hernia in two pig lines

Sevillano Del Aguila, C. A., Soares Lopes, M., Harlizius, B., Hanenberg, E. H. A. T., Knol, E. F. & Bastiaansen, J. W. M., 2015, In : Genetics, Selection, Evolution. 47, 8 p., 18.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Prior genetic architecture impacting genomic regions under selection: an example using genomic selection in two poultry breeds

Zhang, X., Misztal, I., Heidaritabar, M., Bastiaansen, J. W. M., Borg, R. & Okimoto, R., 2015, In : Livestock Science. 171, p. 1-11

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)
2014

A Genome-Wide Association Study Reveals Dominance Effects on Number of Teats in Pigs

Lopes, M. S., Bastiaansen, J. W. M., Harlizius, B., Knol, E. F. & Bovenhuis, H., 2014, In : PLoS ONE. 9, 8, 8 p., e105867.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
27 Citations (Scopus)

Asian low-androstenone haplotype on pig chromosome 6 does not unfavorably affect production and reproduction traits.

Hidalgo, A. M., Bastiaansen, J. W. M., Harlizius, B., Knol, E. F., Lopes, M. S., De Koning, D. J. & Groenen, M., 2014, In : Animal Genetics. 45, 6, p. 874-877

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)
Open Access
1 Citation (Scopus)

Linkage disequilibrium patterns and persistence of phase in purebred and crossbred pig (Sus scrofa) populations

Veroneze, R., Bastiaansen, J. W. M., Knol, E. F., Guimaraes, S. E. F., Silva, F. F., Harlizius, B., Lopes, M. S. & Lopes, P. S., 2014, In : BMC Genetics. 15, 9 p., 126.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
18 Citations (Scopus)
Open Access
5 Citations (Scopus)

Sire evaluation for total number born in pigs using a genomic reaction norms approach

Silva, F. F., Mulder, H. A., Knol, E. F., Lopes, M. S., Guimaraes, S. E. F., Lopes, P. S., Mathur, P. K., Viana, J. M. S. & Bastiaansen, J. W. M., 2014, In : Journal of Animal Science. 92, 9, p. 3825-3834

Research output: Contribution to journalArticleAcademicpeer-review

24 Citations (Scopus)
Open Access
20 Citations (Scopus)

Systematic differences in the response of genetic variation to pedigree and genome-based selection methods

Heidaritabar, M., Vereijken, A., Muir, W. M., Meuwissen, T. H. E., Cheng, H., Megens, H. J. W. C., Groenen, M. & Bastiaansen, J. W. M., 2014, In : Heredity. 113, p. 503-513

Research output: Contribution to journalArticleAcademicpeer-review

13 Citations (Scopus)
2013

Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication

Paudel, Y., Madsen, O., Megens, H. J. W. C., Frantz, L. A. F., Bosse, M., Bastiaansen, J. W. M., Crooijmans, R. P. M. A. & Groenen, M., 2013, In : BMC Genomics. 14, 449.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
76 Citations (Scopus)

Fine mapping and single nucleotide polymorphism effects estimation on pig chromosomes 1, 4, 7, 8, 17 and X

Hidalgo, A. M., Lopes, P. S., Paixao, M., Silva, F., Bastiaansen, J. W. M. & Paiva, A., 2013, In : Genetics and Molecular Biology. 36, 4, p. 511-519

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)

Genetic parameters for natural antibody isotype titers in milk of Dutch Holstein-Friesians

Wijga, S., Bovenhuis, H., Bastiaansen, J. W. M., van Arendonk, J. A. M., Ploegaert, T. C. W., Tijhaar, E. & van der Poel, J. J., 2013, In : Animal Genetics. 44, 5, p. 485-492

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)