Datasets
- 25 results
Search results
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Data underlying the publication: ‘Effects of E. coli Nissle 1917 on the Porcine Gut Microbiota and Immune System in Early Life’
Geervliet, M. (Creator), de Vries, H. (Creator), Jansen, C. (Creator), Rutten, V. (Creator), van Hees, H. M. J. (Creator), Wen, C. (Creator), Skovgaard, K. (Creator), Antonello, G. (Creator), Savelkoul, H. (Creator), Smidt, H. (Creator), Tijhaar, E. (Creator) & Wells, J. (Creator), Wageningen University & Research, 9 Feb 2022
DOI: 10.4121/15060177
Dataset
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Compositional profiling of porcine tonsillar microbiota around weaning in relation to abundance of Streptococcus suis
Gaiser, R. (Creator), Kranenbarg-Stolte, E. (Creator), Boekhorst, J. (Creator), Timmerman, H. (Creator), Kleerebezem, M. (Creator), Wells, J. (Creator) & van Baarlen, P. (Creator), Wageningen University & Research, 7 Apr 2020
Dataset
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Rothia nasimurium strain:PT-32 Genome sequencing and assembly
Gaiser, R. A. (Creator), Medema, M. H. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University, 3 Sept 2016
http://www.ebi.ac.uk/ena/data/view/PRJNA321506
Dataset
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REG3γ-deficient mice have altered mucus distribution and increased mucosal inflammatory responses to the microbiota and enteric pathogens in the ileum
van Baarlen, P. (Creator), Loonen-Jaklofsky, L. (Creator) & Wells, J. (Creator), Wageningen University, 6 Jun 2014
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44409
Dataset
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High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis
Benis, N. (Creator), Wells, J. (Creator), Smits, M. (Creator), Kar, S. (Creator), van der Hee, B. (Creator), Martins dos Santos, V. (Creator) & Schokker, D. (Creator), Wageningen University & Research, 31 Dec 2019
DOI: 10.6084/m9.figshare.c.4801542
Dataset
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Environmental and maternal factors shaping tonsillar microbiota development in piglets
Fredriksen, S. (Creator), Guan, X. (Creator), Boekhorst, J. (Creator), Molist, F. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 27 Sept 2022
DOI: 10.6084/m9.figshare.c.6218396
Dataset
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Streptococcus suis transcriptome strain comparison
Fredriksen, S. (Creator), Ruijten, S. D. E. (Creator), Murray, G. G. R. (Creator), Juanpere-Borràs, M. (Creator), van Baarlen, P. (Creator), Boekhorst, J. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 30 Jul 2022
https://www.ncbi.nlm.nih.gov/bioproject/863843
Dataset
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Transcriptomic analysis of intestinal organoids, derived from pigs divergent in feed efficiency, and their response to Escherichia coli
Madsen, O. (Creator), Rikkers, R. S. C. (Creator), Wells, J. M. (Creator), Bergsma, R. (Creator), Kar, S. K. (Creator), Taverne, N. (Creator), Taverne-Thiele, A. J. (Creator), Ellen, E. D. (Creator) & Woelders, H. (Creator), Wageningen University & Research, 30 Nov 2022
https://www.ebi.ac.uk/ena/browser/view/PRJEB57598
Dataset
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Oxford Nanopore long-read genome sequencing of mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system
Gussak, A. (Creator), Ferrando, M. L. (Creator), Schrama, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 26 Jul 2023
DOI: 10.4121/6affb4a6-2893-41e8-bdf8-d276247d7d19
Dataset
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Complement active human and porcine serum induces natural competence for genetic transformation in the emerging zoonotic pathogen Streptococcus suis
Ferrando, L. (Creator), Gussak, A. (Creator), Mentink, S. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 24 Feb 2020
Dataset
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Escherichia coli strain:DSM 8711 Genome sequencing and assembly
Fernandez-Ciruelos, B. (Creator), Potmis, T. (Creator), Solomin, V. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 7 Feb 2023
https://www.ncbi.nlm.nih.gov/bioproject/930679
Dataset
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Transcriptome profiling of porcine jejunum tissue, its derived organoids over long-term culture, and transformed cell line IPECJ2 as reference model
van der Hee, B. (Creator), Crooijmans, R. (Creator), Taverne, N. (Creator), Choudhury, R. (Creator), Loonen-Jaklofsky, L. (Creator), Madsen, O. (Creator), Smidt, H. (Creator) & Wells, J. (Creator), Wageningen University, 13 Mar 2020
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE146408
Dataset
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Data underlying the publication: "A mammalian commensal of the oropharyngeal cavity produces antibiotic and antiviral valinomycin in vivo"
Gaiser, R. (Creator), Ferrando, L. (Creator), Oddo, A. (Creator), Pereira, M. (Creator), Boekhorst, J. (Creator), Guan, X. (Creator), Molist, F. (Creator), Fernandez Gutierrez, M. (Creator), Fredriksen, S. (Creator), Bryant, C. E. (Creator), Petras, D. (Creator), Dorrestein, P. C. (Creator), Boeren, S. (Creator), Medema, M. (Creator), Hill, C. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 28 Sept 2023
Dataset
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Vectorial secretion of interleukin-8 (IL-8 or CXCL8) mediates homeostatic effects on the intestinal epithelium via apically located CXCR1
van Baarlen, P. (Creator), Rossi, O. (Creator) & Wells, J. (Creator), Wageningen University, 28 Jun 2014
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30364
Dataset
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Rothia spp from the porcine tonsil microbiota
Fernandes de Oliveira, I. (Creator), Ng, D. Y. K. (Creator), van Baarlen, P. (Creator), Stegger, M. (Creator), Andersen, P. S. (Creator) & Wells, J. (Creator), Wageningen University and Research Centre, 5 Jan 2022
https://www.ebi.ac.uk/ena/browser/view/PRJEB49523
Dataset
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Draft genome sequence of Streptococcus suis S10, a virulent strain used in experimental pig infections
Gaiser, R. A. (Creator), Zomer, A. L. (Creator), Wells, J. M. (Creator) & van Baarlen, P. (Creator), Utrecht University, 28 Mar 2019
https://www.ebi.ac.uk/ena/browser/view/PRJEB30600
Dataset
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Aging-induced decline in mucus thickness in mice is associated with changes in microbiota composition and immunity and is sex dependent
Elderman, M. (Creator), Sovran, B. (Creator), Hugenholtz, F. (Creator), Graversen, K. (Creator), Huijskes, M. (Creator), Houtsma, E. (Creator), Belzer, C. (Creator), Boekschoten, M. V. (Creator), de Vos, P. (Creator), Dekker, J. (Creator), Wells, J. M. (Creator) & Faas, M. M. (Creator), Wageningen University, 28 Aug 2017
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE94515
Dataset
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Data from: Impact of Yeast-Derived β-Glucans on the Porcine Gut Microbiota and Immune System in Early Life
de Vries, H. (Creator), Geervliet, M. (Creator), Jansen, C. A. (Creator), Rutten, V. P. M. G. (Creator), van Hees, H. M. J. (Creator), Groothuis, N. (Creator), Wells, J. (Creator), Savelkoul, H. (Creator), Tijhaar, E. (Creator) & Smidt, H. (Creator), Wageningen University & Research, 12 Nov 2020
DOI: 10.4121/12999620
Dataset
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Data: Longitudinal study on the tonsillar microbiota of piglets
Fredriksen, S. (Creator), Guan, X. (Creator), Boekhorst, J. (Creator), Molist, F. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 18 Nov 2021
Dataset
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Hybrid assemblies of Streptococcus suis isolates from transcriptomic study
Fredriksen, S. (Creator), Ruijten, S. D. E. (Creator), Murray, G. G. R. (Creator), Juanpere-Borràs, M. (Creator), van Baarlen, P. (Creator), Boekhorst, J. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 4 Jul 2022
https://www.ncbi.nlm.nih.gov/bioproject/855487
Dataset
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Shotgun and amplicon sequencing reads from piglet tonsil microbiome study
Frederiksen, S. (Creator), Neila-Ibáñez, C. (Creator), Hennig-Pauka, I. (Creator), Guan, X. (Creator), Dunkelberger, J. (Creator), Fernandes de Oliveira, I. F. (Creator), Ferrando, M. L. (Creator), Correa-Fiz, F. (Creator), Aragon, V. (Creator), Boekhorst, J. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 30 Jun 2022
https://www.ncbi.nlm.nih.gov/bioproject/854341
Dataset
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Streptococcus suis isolate genomes from tonsil microbiome study on European farms
Frederiksen, S. (Creator), Neila-Ibáñez, C. (Creator), Hennig-Pauka, I. (Creator), Guan, X. (Creator), Dunkelberger, J. (Creator), Fernandes de Oliveira, I. F. (Creator), Ferrando, M. L. (Creator), Correa-Fiz, F. (Creator), Aragon, V. (Creator), Boekhorst, J. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 3 Jun 2022
https://www.ncbi.nlm.nih.gov/bioproject/849547
Dataset
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Clinical Streptococcus suis strains from Schothorst Feed Research
Fredriksen, S. (Creator), Neila-Ibáñez, C. (Creator), Hennig-Pauka, I. (Creator), Guan, X. (Creator), Dunkelberger, J. (Creator), de Oliveira, I. F. (Creator), Ferrando, M. L. (Creator), Correa-Fiz, F. (Creator), Aragon, V. (Creator), Boekhorst, J. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 23 Jun 2022
https://www.ncbi.nlm.nih.gov/bioproject/849577
Dataset
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Illumina short-read genome sequencing of knockout mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system
Gussak, A. (Creator), Ferrando, M. L. (Creator), Schrama, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 26 Jul 2023
DOI: 10.4121/21679886
Dataset
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Transcriptomic analysis of Streptococcus suis Small Colony variants (SCVs) immune to Cas9-mediated genome editing
Gussak, A. (Creator), Ferrando, M. L. (Creator), Schrama, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 26 Jun 2023
DOI: 10.4121/21680384
Dataset