Jerry Wells

Search results

• Data underlying the publication: ‘Effects of E. coli Nissle 1917 on the Porcine Gut Microbiota and Immune System in Early Life’

  Geervliet, M. (Creator), de Vries, H. (Creator), Jansen, C. (Creator), Rutten, V. (Creator), van Hees, H. M. J. (Creator), Wen, C. (Creator), Skovgaard, K. (Creator), Antonello, G. (Creator), Savelkoul, H. (Creator), Smidt, H. (Creator), Tijhaar, E. (Creator) & Wells, J. (Creator), Wageningen University & Research, 9 Feb 2022

  DOI: 10.4121/15060177

  Dataset

• Compositional profiling of porcine tonsillar microbiota around weaning in relation to abundance of Streptococcus suis

  Gaiser, R. (Creator), Kranenbarg-Stolte, E. (Creator), Boekhorst, J. (Creator), Timmerman, H. (Creator), Kleerebezem, M. (Creator), Wells, J. (Creator) & van Baarlen, P. (Creator), Wageningen University & Research, 7 Apr 2020

  DOI: 10.17026/dans-x8k-kuxs

  Dataset

• Rothia nasimurium strain:PT-32 Genome sequencing and assembly

  Gaiser, R. A. (Creator), Medema, M. H. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University, 3 Sept 2016

  http://www.ebi.ac.uk/ena/data/view/PRJNA321506

  Dataset

• REG3γ-deficient mice have altered mucus distribution and increased mucosal inflammatory responses to the microbiota and enteric pathogens in the ileum

  van Baarlen, P. (Creator), Loonen-Jaklofsky, L. (Creator) & Wells, J. (Creator), Wageningen University, 6 Jun 2014

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44409

  Dataset

• High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis

  Benis, N. (Creator), Wells, J. (Creator), Smits, M. (Creator), Kar, S. (Creator), van der Hee, B. (Creator), Martins dos Santos, V. (Creator) & Schokker, D. (Creator), Wageningen University & Research, 31 Dec 2019

  DOI: 10.6084/m9.figshare.c.4801542

  Dataset

• Environmental and maternal factors shaping tonsillar microbiota development in piglets

  Fredriksen, S. (Creator), Guan, X. (Creator), Boekhorst, J. (Creator), Molist, F. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 27 Sept 2022

  DOI: 10.6084/m9.figshare.c.6218396

  Dataset

• Streptococcus suis transcriptome strain comparison

  Fredriksen, S. (Creator), Ruijten, S. D. E. (Creator), Murray, G. G. R. (Creator), Juanpere-Borràs, M. (Creator), van Baarlen, P. (Creator), Boekhorst, J. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 30 Jul 2022

  https://www.ncbi.nlm.nih.gov/bioproject/863843

  Dataset

• Transcriptomic analysis of intestinal organoids, derived from pigs divergent in feed efficiency, and their response to Escherichia coli

  Madsen, O. (Creator), Rikkers, R. S. C. (Creator), Wells, J. M. (Creator), Bergsma, R. (Creator), Kar, S. K. (Creator), Taverne, N. (Creator), Taverne-Thiele, A. J. (Creator), Ellen, E. D. (Creator) & Woelders, H. (Creator), Wageningen University & Research, 30 Nov 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB57598

  Dataset

• Oxford Nanopore long-read genome sequencing of mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system

  Gussak, A. (Creator), Ferrando, M. L. (Creator), Schrama, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 26 Jul 2023

  DOI: 10.4121/6affb4a6-2893-41e8-bdf8-d276247d7d19

  Dataset

• Complement active human and porcine serum induces natural competence for genetic transformation in the emerging zoonotic pathogen Streptococcus suis

  Ferrando, L. (Creator), Gussak, A. (Creator), Mentink, S. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 24 Feb 2020

  DOI: 10.17026/dans-z5w-v5m3

  Dataset

• Escherichia coli strain:DSM 8711 Genome sequencing and assembly

  Fernandez-Ciruelos, B. (Creator), Potmis, T. (Creator), Solomin, V. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 7 Feb 2023

  https://www.ncbi.nlm.nih.gov/bioproject/930679

  Dataset

• Transcriptome profiling of porcine jejunum tissue, its derived organoids over long-term culture, and transformed cell line IPECJ2 as reference model

  van der Hee, B. (Creator), Crooijmans, R. (Creator), Taverne, N. (Creator), Choudhury, R. (Creator), Loonen-Jaklofsky, L. (Creator), Madsen, O. (Creator), Smidt, H. (Creator) & Wells, J. (Creator), Wageningen University, 13 Mar 2020

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE146408

  Dataset

• Data underlying the publication: "A mammalian commensal of the oropharyngeal cavity produces antibiotic and antiviral valinomycin in vivo"

  Gaiser, R. (Creator), Ferrando, L. (Creator), Oddo, A. (Creator), Pereira, M. (Creator), Boekhorst, J. (Creator), Guan, X. (Creator), Molist, F. (Creator), Fernandez Gutierrez, M. (Creator), Fredriksen, S. (Creator), Bryant, C. E. (Creator), Petras, D. (Creator), Dorrestein, P. C. (Creator), Boeren, S. (Creator), Medema, M. (Creator), Hill, C. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 28 Sept 2023

  DOI: 10.17026/dans-zf3-7tt4

  Dataset

• Vectorial secretion of interleukin-8 (IL-8 or CXCL8) mediates homeostatic effects on the intestinal epithelium via apically located CXCR1

  van Baarlen, P. (Creator), Rossi, O. (Creator) & Wells, J. (Creator), Wageningen University, 28 Jun 2014

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30364

  Dataset

• Rothia spp from the porcine tonsil microbiota

  Fernandes de Oliveira, I. (Creator), Ng, D. Y. K. (Creator), van Baarlen, P. (Creator), Stegger, M. (Creator), Andersen, P. S. (Creator) & Wells, J. (Creator), Wageningen University and Research Centre, 5 Jan 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB49523

  Dataset

• Draft genome sequence of Streptococcus suis S10, a virulent strain used in experimental pig infections

  Gaiser, R. A. (Creator), Zomer, A. L. (Creator), Wells, J. M. (Creator) & van Baarlen, P. (Creator), Utrecht University, 28 Mar 2019

  https://www.ebi.ac.uk/ena/browser/view/PRJEB30600

  Dataset

• Aging-induced decline in mucus thickness in mice is associated with changes in microbiota composition and immunity and is sex dependent

  Elderman, M. (Creator), Sovran, B. (Creator), Hugenholtz, F. (Creator), Graversen, K. (Creator), Huijskes, M. (Creator), Houtsma, E. (Creator), Belzer, C. (Creator), Boekschoten, M. V. (Creator), de Vos, P. (Creator), Dekker, J. (Creator), Wells, J. M. (Creator) & Faas, M. M. (Creator), Wageningen University, 28 Aug 2017

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE94515

  Dataset

• Data from: Impact of Yeast-Derived β-Glucans on the Porcine Gut Microbiota and Immune System in Early Life

  de Vries, H. (Creator), Geervliet, M. (Creator), Jansen, C. A. (Creator), Rutten, V. P. M. G. (Creator), van Hees, H. M. J. (Creator), Groothuis, N. (Creator), Wells, J. (Creator), Savelkoul, H. (Creator), Tijhaar, E. (Creator) & Smidt, H. (Creator), Wageningen University & Research, 12 Nov 2020

  DOI: 10.4121/12999620

  Dataset

• Data: Longitudinal study on the tonsillar microbiota of piglets

  Fredriksen, S. (Creator), Guan, X. (Creator), Boekhorst, J. (Creator), Molist, F. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 18 Nov 2021

  DOI: 10.17026/dans-xxb-56zp

  Dataset

• Hybrid assemblies of Streptococcus suis isolates from transcriptomic study

  Fredriksen, S. (Creator), Ruijten, S. D. E. (Creator), Murray, G. G. R. (Creator), Juanpere-Borràs, M. (Creator), van Baarlen, P. (Creator), Boekhorst, J. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 4 Jul 2022

  https://www.ncbi.nlm.nih.gov/bioproject/855487

  Dataset

• Shotgun and amplicon sequencing reads from piglet tonsil microbiome study

  Frederiksen, S. (Creator), Neila-Ibáñez, C. (Creator), Hennig-Pauka, I. (Creator), Guan, X. (Creator), Dunkelberger, J. (Creator), Fernandes de Oliveira, I. F. (Creator), Ferrando, M. L. (Creator), Correa-Fiz, F. (Creator), Aragon, V. (Creator), Boekhorst, J. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 30 Jun 2022

  https://www.ncbi.nlm.nih.gov/bioproject/854341

  Dataset

• Streptococcus suis isolate genomes from tonsil microbiome study on European farms

  Frederiksen, S. (Creator), Neila-Ibáñez, C. (Creator), Hennig-Pauka, I. (Creator), Guan, X. (Creator), Dunkelberger, J. (Creator), Fernandes de Oliveira, I. F. (Creator), Ferrando, M. L. (Creator), Correa-Fiz, F. (Creator), Aragon, V. (Creator), Boekhorst, J. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 3 Jun 2022

  https://www.ncbi.nlm.nih.gov/bioproject/849547

  Dataset

• Clinical Streptococcus suis strains from Schothorst Feed Research

  Fredriksen, S. (Creator), Neila-Ibáñez, C. (Creator), Hennig-Pauka, I. (Creator), Guan, X. (Creator), Dunkelberger, J. (Creator), de Oliveira, I. F. (Creator), Ferrando, M. L. (Creator), Correa-Fiz, F. (Creator), Aragon, V. (Creator), Boekhorst, J. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 23 Jun 2022

  https://www.ncbi.nlm.nih.gov/bioproject/849577

  Dataset

• Illumina short-read genome sequencing of knockout mutants in Streptococcus suis strain P1/7 constructed using pSStarget, a novel plasmid-based CRISPR/Cas9 genome editing system

  Gussak, A. (Creator), Ferrando, M. L. (Creator), Schrama, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 26 Jul 2023

  DOI: 10.4121/21679886

  Dataset

• Transcriptomic analysis of Streptococcus suis Small Colony variants (SCVs) immune to Cas9-mediated genome editing

  Gussak, A. (Creator), Ferrando, M. L. (Creator), Schrama, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 26 Jun 2023

  DOI: 10.4121/21680384

  Dataset