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Jasper Koehorst, MSc

 https://orcid.org/0000-0001-8172-8981
    20122020

    Research output per year

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    Fingerprint Dive into the research topics where Jasper Koehorst is active. These topic labels come from the works of this person. Together they form a unique fingerprint. If staff member(s) published prior to his/her WUR affiliation, it is possible that the publication overview, Fingerprint and network diagram are incomplete.

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    Research Output

    MEMOTE for standardized genome-scale metabolic model testing

    Lieven, C., Beber, M. E., Olivier, B. G., Bergmann, F. T., Ataman, M., Babaei, P., Bartell, J. A., Blank, L. M., Chauhan, S., Correia, K., Diener, C., Dräger, A., Ebert, B. E., Edirisinghe, J. N., Faria, J. P., Feist, A. M., Fengos, G., Fleming, R. M. T., García-Jiménez, B., Hatzimanikatis, V. & 49 others, van Helvoirt, W., Henry, C. S., Hermjakob, H., Herrgård, M. J., Kaafarani, A., Kim, H. U., King, Z., Klamt, S., Klipp, E., Koehorst, J. J., König, M., Lakshmanan, M., Lee, D. Y., Lee, S. Y., Lee, S., Lewis, N. E., Liu, F., Ma, H., Machado, D., Mahadevan, R., Maia, P., Mardinoglu, A., Medlock, G. L., Monk, J. M., Nielsen, J., Nielsen, L. K., Nogales, J., Nookaew, I., Palsson, B. O., Papin, J. A., Patil, K. R., Poolman, M., Price, N. D., Resendis-Antonio, O., Richelle, A., Rocha, I., Sánchez, B. J., Schaap, P. J., Malik Sheriff, R. S., Shoaie, S., Sonnenschein, N., Teusink, B., Vilaça, P., Vik, J. O., Wodke, J. A. H., Xavier, J. C., Yuan, Q., Zakhartsev, M. & Zhang, C., 1 Mar 2020, In : Nature Biotechnology. 38, 3, p. 272-276 5 p.

    Research output: Contribution to journal › Comment/Letter to the editor › Academic

    Open Access
    1 Citation (Scopus)

    NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis

    Poncheewin, W., Hermes, G. D. A., Van Dam, J. C. J., Koehorst, J. J., Smidt, H. & Schaap, P. J., 23 Jan 2020, In : Frontiers in Genetics. 10, 1366.

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access
    • 2 Citations (Scopus)

    Organohalide-respiring Desulfoluna species isolated from marine environments

    Peng, P., Goris, T., Lu, Y., Nijsse, B., Burrichter, A., Schleheck, D., Koehorst, J. J., Liu, J., Sipkema, D., Sinninghe Damste, J. S., Stams, A. J. M., Häggblom, M. M., Smidt, H. & Atashgahi, S., Mar 2020, In : ISME Journal. 14, p. 815–827

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access

    • Time-dependent transcriptome profile of genes involved in triacylglycerol (TAG) and polyunsaturated fatty acid synthesis in Nannochloropsis gaditana during nitrogen starvation

    Janssen, J. H., Spoelder, J., Koehorst, J. J., Schaap, P. J., Wijffels, R. H. & Barbosa, M. J., Apr 2020, In : Journal of Applied Phycology. 32, p. 1153-1164

    Research output: Contribution to journal › Article › Academic › peer-review

    Open Access

    • A FAIR approach to genomics

    Koehorst, J. J., 2019, Wageningen: Wageningen University. 245 p.

    Research output: Thesis › internal PhD, WU

    Open Access

    • Datasets

    Transcriptomics datasets for Clostridium autoethanogenum grown on CO in different environmental conditions

    Diender, M. (Creator), Koehorst, J. (Creator), Machado de Sousa, D. (Creator), Wageningen University & Research, 25 Jan 2019

    DOI: 10.4121/uuid:b6bd64a9-5bdb-4655-9829-520aa4600987

    Dataset

    Expected and observed genotype complexity in prokaryotes: correlation between 16S-rRNA phylogeny and protein domain content

    Koehorst, J. (Creator), Wageningen University & Research, 24 Oct 2018

    DOI: 10.4121/uuid:37346f1e-f8cf-4112-ba4b-1223a3e4edda

    Dataset

    Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

    Koehorst, J. (Creator), Wageningen University & Research, 25 Sep 2018

    DOI: 10.4121/uuid:948c10fe-7ea5-47f3-bdb2-d5b0f908820b

    Dataset

    RNA-targeting by the Type III-A CRISPR-Cas complex of Thermus thermophilus

    Staals, R. (Creator), Zhu, Y. (Creator), Taylor, D. W. (Creator), Kornfeld, J. E. (Creator), Sharma, K. (Creator), Barendregt, A. (Creator), Koehorst, J. (Creator), Vlot, M. (Creator), Neupane, N. (Creator), Varossieau, K. (Creator), Sakamoto, K. (Creator), Suzuki, T. (Creator), Schaap, P. (Creator), Urlaub, H. (Creator), Heck, A. J. R. (Creator), Nogales, E. (Creator), Doudna, J. A. (Creator), Shinkai, A. (Creator), van der Oost, J. (Creator), Wageningen University, 9 Oct 2014

    http://www.ebi.ac.uk/ena/data/view/PRJEB7461

    Dataset

    Effects of Argonaute on gene expression in Thermus thermophilus

    Swarts, D. (Creator), Koehorst, J. (Creator), Westra, E. R. (Creator), Schaap, P. (Creator), van der Oost, J. (Creator), Wageningen University, 23 Apr 2015

    https://www.ebi.ac.uk/ena/data/view/PRJEB8709

    Dataset

    Projects

    Improving outcome of necrotizing fasciitis: Elucidation of complex host and pathogen signatures that dictate severity of tissue infection.

    Koehorst, J., Martins dos Santos, V. & Schaap, P.

    1/10/12 → 25/01/19

    Project: PhD