Jasper Koehorst

dr.

Postdoc, Systems and Synthetic Biology
PhD Student, Systems and Synthetic Biology
PhD Student, VLAG

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30 Article
1 Abstract
1 Comment/Letter to the editor
1 Pamphlet
More
- 1 internal PhD, WU
- 1 Working paper

A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration
Kampers, L. F. C., Koehorst, J. J., van Heck, R. J. A., Suarez-Diez, M., Stams, A. J. M. & Schaap, P. J., 6 Jan 2021, In : BMC Microbiology. 21, 1, 9.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses
Waagmeester, A., Willighagen, E. L., Su, A. I., Kutmon, M., Labra Gayo, J. E., Fernández-Alvarez, D., Groom, Q., Schaap, P. J., Verhagen, L. M. & Koehorst, J. J., 22 Jan 2021, In : BMC Biology. 19, 12.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
Experimental infrastructure requirements for quantitative research on microbial communities
Kleerebezem, R., Stouten, G., Koehorst, J., Langenhoff, A., Schaap, P. & Smidt, H., 14 Feb 2021, In : Current Opinion in Biotechnology. 67, p. 158-165 8 p.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
Data for Digital Twins: Deliverable of the project “Data Access and Use by Digital Twins”
Knapen, M. J. R., Koehorst, J. J., Ringersma, J. & Top, J. L., Dec 2020, 27 p.
Research output: Other contribution › Pamphlet
MEMOTE for standardized genome-scale metabolic model testing
Lieven, C., Beber, M. E., Olivier, B. G., Bergmann, F. T., Ataman, M., Babaei, P., Bartell, J. A., Blank, L. M., Chauhan, S., Correia, K., Diener, C., Dräger, A., Ebert, B. E., Edirisinghe, J. N., Faria, J. P., Feist, A. M., Fengos, G., Fleming, R. M. T., García-Jiménez, B., Hatzimanikatis, V. & 49 others, van Helvoirt, W., Henry, C. S., Hermjakob, H., Herrgård, M. J., Kaafarani, A., Kim, H. U., King, Z., Klamt, S., Klipp, E., Koehorst, J. J., König, M., Lakshmanan, M., Lee, D. Y., Lee, S. Y., Lee, S., Lewis, N. E., Liu, F., Ma, H., Machado, D., Mahadevan, R., Maia, P., Mardinoglu, A., Medlock, G. L., Monk, J. M., Nielsen, J., Nielsen, L. K., Nogales, J., Nookaew, I., Palsson, B. O., Papin, J. A., Patil, K. R., Poolman, M., Price, N. D., Resendis-Antonio, O., Richelle, A., Rocha, I., Sánchez, B. J., Schaap, P. J., Malik Sheriff, R. S., Shoaie, S., Sonnenschein, N., Teusink, B., Vilaça, P., Vik, J. O., Wodke, J. A. H., Xavier, J. C., Yuan, Q., Zakhartsev, M. & Zhang, C., 19 Mar 2020, In : Nature Biotechnology. 38, 3, p. 272-276 5 p.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access

28 Citations (Scopus)

Transcriptomics datasets for Clostridium autoethanogenum grown on CO in different environmental conditions
Diender, M. (Creator), Koehorst, J. (Creator) & Machado de Sousa, D. (Creator), Wageningen University & Research, 25 Jan 2019
DOI: 10.4121/uuid:b6bd64a9-5bdb-4655-9829-520aa4600987
Dataset
Expected and observed genotype complexity in prokaryotes: correlation between 16S-rRNA phylogeny and protein domain content
Koehorst, J. (Creator), Schaap, P. (Contributor) & Suarez Diez, M. (Contributor), Wageningen University & Research, 24 Oct 2018
DOI: 10.4121/uuid:37346f1e-f8cf-4112-ba4b-1223a3e4edda
Dataset
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
Koehorst, J. (Creator), van Dam, J. C. J. (Contributor), van Heck, R. G. A. (Contributor), Saccenti, E. (Contributor), Martins dos Santos, V. (Contributor), Suarez Diez, M. (Contributor) & Schaap, P. (Contributor), Wageningen University & Research, 25 Sep 2018
DOI: 10.4121/uuid:948c10fe-7ea5-47f3-bdb2-d5b0f908820b
Dataset
Comparative genomics, symbiotic capacities and high metabolic flexibility of the marine genus Pseudovibrio
Versluis, D. (Creator), Nijsse, B. (Creator), Mohamad, M. A. N. (Creator), Koehorst, J. (Creator), Wiese, J. (Creator), Imhoff, J. F. (Creator), Schaap, P. (Creator), van Passel, M. W. J. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University, 28 Jun 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB20602
Dataset
RNA-targeting by the Type III-A CRISPR-Cas complex of Thermus thermophilus
Staals, R. (Creator), Zhu, Y. (Creator), Taylor, D. W. (Creator), Kornfeld, J. E. (Creator), Sharma, K. (Creator), Barendregt, A. (Creator), Koehorst, J. (Creator), Vlot, M. (Creator), Neupane, N. (Creator), Varossieau, K. (Creator), Sakamoto, K. (Creator), Suzuki, T. (Creator), Schaap, P. (Creator), Urlaub, H. (Creator), Heck, A. J. R. (Creator), Nogales, E. (Creator), Doudna, J. A. (Creator), Shinkai, A. (Creator) & van der Oost, J. (Creator), Wageningen University, 9 Oct 2014
http://www.ebi.ac.uk/ena/data/view/PRJEB7461
Dataset

1 Finished

Improving outcome of necrotizing fasciitis: Elucidation of complex host and pathogen signatures that dictate severity of tissue infection.
Koehorst, J., Martins dos Santos, V. & Schaap, P.
1/10/12 → 25/01/19
Project: PhD