1988 …2020

Research output per year

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Article
2020

Genetic Variation in Caenorhabditis elegans Responses to Pathogenic Microbiota

Huang, Y. & Kammenga, J. E., 24 Apr 2020, In : Microorganisms. 8, 4, 618.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

Snoek, B. L., Sterken, M. G., Hartanto, M., Van Zuilichem, A-J., Kammenga, J. E., De Ridder, D. & Nijveen, H., 21 Jan 2020, In : Database : the Journal of Biological Databases and Curation. 2020, baz149.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2019

A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits

Snoek, B. L., Volkers, J. M., Nijveen, H., Petersen, C., Dirksen, P., Sterken, M. G., Nakad, R., Riksen, J. A. G., Rosenstiel, P. C., Stastna, J. J., Braekman, B. P., Harvey, S. C., Schulenburg, H. & Kammenga, J. E., 12 Mar 2019, In : BMC Biology. 17, 17 p., 24.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Genetic background modifies phenotypic and transcriptional responses in a C. elegans model of α-synuclein toxicity

Wang, Y. A., Snoek, B. L., Sterken, M. G., Riksen, J. A. G., Stastna, J. J., Kammenga, J. E. & Harvey, S. C., 20 Mar 2019, In : BMC Genomics. 20, 1, 12 p., 232.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Selection and gene flow shape niche-associated variation in pheromone response

Lee, D., Zdraljevic, S., Cook, D. E., Frézal, L., Hsu, J-C., Sterken, M. G., Riksen, J. A. G., Wang, J., Kammenga, J. E., Braendle, C., Félix, M-A., Schroeder, F. C. & Andersen, E. C., 1 Oct 2019, In : Nature Ecology & Evolution. 3, p. 1455-1463

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

The hypoxia-response pathway modulates RAS/MAPK–mediated cell fate decisions in Caenorhabditis elegans

Maxeiner, S., Grolleman, J., Schmid, T., Kammenga, J. E. & Hajnal, A., 24 May 2019, In : Life Science Alliance. 2, 3, e201800255.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Transcriptome resilience predicts thermotolerance in Caenorhabditis elegans

Jovic, K., Grilli, J., Sterken, M. G., Snoek, B. L., Riksen, J. A. G., Allesina, S. & Kammenga, J. E., 10 Dec 2019, In : BMC Biology. 17, 1, 102.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2018

Forward and reverse genetics approaches to uncover metabolic aging pathways in Caenorhabditis elegans

Gao, A. W., uit de Bos, J., Sterken, M. G., Kammenga, J. E., Smith, R. L. & Houtkooper, R. H., Sep 2018, In : Biochimica et Biophysica Acta. Molecular Basis of Disease. 1864, 9A, p. 2697-2706 36 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)
Open Access
6 Citations (Scopus)

Natural genetic variation in C. elegans identified genomic loci controlling metabolite levels

Gao, A. W., Sterken, M. G., Uit De Bos, J., van Creij, J., Kamble, R., Snoek, B. L., Kammenga, J. E. & Houtkooper, R. H., 14 Aug 2018, In : Genome Research. 28, 8, p. 1296-1308

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Natural plant hormones cytokinins increase stress resistance and longevity of Caenorhabditis elegans

Kadlecová, A., Jirsa, T., Novák, O., Kammenga, J., Strnad, M. & Voller, J., Apr 2018, In : Biogerontology. 19, 2, p. 109-120

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Quantifying resilience of humans and other animals

Scheffer, M., Bolhuis, J. E., Borsboom, D., Buchman, T. G., Gijzel, S. M. W., Goulson, D., Kammenga, J. E., Kemp, B., van de Leemput, I. A., Levin, S., Martin, C. M., Melis, R. J. F., van Nes, E. H., Romero, L. M. & Olde Rikkert, M. G. M., 20 Nov 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 47, p. 11883-11890

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
31 Citations (Scopus)

Rictor/TORC2 mediates gut-to-brain signaling in the regulation of phenotypic plasticity in C. elegans

O’Donnell, M. P., Chao, P-H., Kammenga, J. E. & Sengupta, P., 7 Feb 2018, In : Plos Genetics. 14, 2, e1007213.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)
2017

AraQTL - Workbench and Archive for systems genetics in Arabidopsis thaliana

Nijveen, H., Ligterink, W., Keurentjes, J. J. B., Loudet, O., Long, J., Sterken, M. G., Prins, P., Hilhorst, H. W., De Ridder, D., Kammenga, J. E. & Snoek, B. L., 2017, In : The Plant Journal. 89, 6, p. 1225-1235

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans

Snoek, B. L., Sterken, M. G., Bevers, R. P. J., Volkers, R. J. M., van 't Hof, A., Brenchley, R., Riksen, J. A. G., Cossins, A. & Kammenga, J. E., 2017, In : BMC Genomics. 18, 15 p., 500.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Disparate gain and loss of parasitic abilities among nematode lineages

Holterman, M., Karegar, A., Mooijman, P., van Megen, H., van den Elsen, S., Vervoort, M. T. W., Quist, C. W., Karssen, G., Decraemer, W., Opperman, C. H., Bird, D. M., Kammenga, J., Goverse, A., Smant, G. & Helder, H., 2017, In : PLoS ONE. 12, 9, 18 p., e0185445.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)

Genetic variation in neurodegenerative diseases and its accessibility in the modelorganism Caenorhabditis elegans

Wang, Y. A., Kammenga, J. E. & Harvey, S. C., 2017, In : Human Genomics. 11, 12.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

Ras/MAPK Modifier Loci Revealed by eQTL in Caenorhabditis elegans

Sterken, M. G., van Bemmelen-van der Plaat, L., Riksen, J. A., Rodriguez, M., Schmid, T., Hajnal, A., Kammenga, J. E. & Snoek, B. L., 2017, In : G3 : Genes Genomes Genetics. 7, 9, p. 3185-3193

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

reGenotyper: Detecting mislabeled samples in genetic data

Zych, K., Snoek, B. L., Elvin, M., Rodriguez, M., Van Der Velde, K. J., Arends, D., Westra, H-J., Swertz, M. A., Poulin, G., Kammenga, J. E., Breitling, R., Jansen, R. C. & Li, Y., 2017, In : PLoS ONE. 12, 2, e0171324.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Temporal dynamics of gene expression in heat-stressed Caenorhabditis elegans

Jovic, K., Sterken, M. G., Grilli, J., Bevers, R. P. J., Rodriguez Sanchez, M., Riksen, J. A. G., Allesina, S., Kammenga, J. E. & Snoek, L. B., 11 Dec 2017, In : PLoS ONE. 12, 12, 16 p., e0189445.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

The background puzzle: how identical mutations in the same gene lead to different disease symptoms

Kammenga, J. E., 16 Oct 2017, In : FEBS Journal. 284, 20, p. 3362-3373

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
21 Citations (Scopus)

Why do Individuals Differ in Viral Susceptibility? A Story Told by Model Organisms

van Sluijs, L., Pijlman, G. P. & Kammenga, J. E., 2017, In : Viruses. 9, 10, 284.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)
2016

Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1

Nakad, R., Snoek, B., Yang, W., Ellendt, S., Schneider, F., Mohr, T. G., Rösingh, L., Masche, A. C., Rosenstiel, P. C., Dierking, K., Kammenga, J. E. & Schulenburg, H., 1 Dec 2016, In : BMC Genomics. 17, 1, 20 p., 280.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
15 Citations (Scopus)

Natural genetic variation differentially affects the proteome and transcriptome in Caenorhabditis elegans

Kamkina, P., Snoek, L. B., Grossmann, J., Volkers, R. J. M., Sterken, M. G., Daube, M., Roschitzki, B., Fortes, C., Schlapbach, R., Roth, A., von Mering, C., Hengartner, M. O., Schrimpf, S. P. & Kammenga, J. E., 2016, In : Molecular and Cellular Proteomics. 15, 5, p. 1670-1680

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Natural Genetic Variation Influences Protein Abundances in C. elegans Developmental Signalling Pathways

Singh, K. D., Roschitzki, B., Snoek, B., Grossmann, J., Zheng, X., Elvin, M., Kamkina, P., Schrimpf, S. P., Poulin, G. B., Kammenga, J. E., Hengartner, M. O. & Rutherford, S. (ed.), 2016, In : PLoS ONE. 11, 3, e0149418.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length

Cook, D. C., Zdraljevic, S., Tanny, R. E., Seo, B., Riccardi, D. D., Noble, L. M., Rockman, M. V., Alkema, M. J., Braendle, C., Kammenga, J. E., Wang, J., Kruglyak, L., Felix, M. A., Lee, J. & Andersen, E. C., 2016, In : Genetics. 204, 1, p. 371-383

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
36 Citations (Scopus)
2015

Caenorhabditis elegans DAF-16/FOXO Transcription Factor and Its Mammalian Homologs Associate with Age-Related Disease

Hesp, K., Smant, G. & Kammenga, J. E., 2015, In : Experimental Gerontology. 72, p. 1-7

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
38 Citations (Scopus)

Genotype-dependent lifespan effects in peptone deprived Caenorhabditis elegans

Stastna, J., Snoek, L. B., Kammenga, J. E. & Harvey, S. C., 2015, In : Scientific Reports. 5, 9 p., 16259.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)

On predicting regulatory genes by analysis of functional networks in C. elegans

Valba, O. V., Nechaev, S., Sterken, M. G., Snoek, L. B., Kammenga, J. E. & Vasieva, O., 2015, In : BioData Mining. 8, 1, 16 p., 33.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Remarkably divergent regions punctuate the genome assembly of the Caenorhabditis elegans Hawaiian strain CB4856

Thompson, O. A., Snoek, L. B., Nijveen, H., Sterken, M. G., Volkers, R. J. M., Brenchley, R., van 't Hof, A., Bevers, R. P. J., Cossins, A. R., Yanai, I., Hajnal, A., Schmid, T., Perkins, J. D., Spencer, D., Kruglyak, L., Andersen, E. C., Moerman, D. G., Hillier, L. W., Kammenga, J. E. & Waterston, R. H., 2015, In : Genetics. 200, 3, p. 975-989

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
43 Citations (Scopus)

Systemic Regulation of RAS/MAPK Signaling by the Serotonin Metabolite 5-HIAA

Schmid, T., Snoek, L. B., Fröhli, E., van der Bent, M. L., Kammenga, J. E. & Hajnal, A., 2015, In : Plos Genetics. 11, 5, 16 p., e1005236.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
17 Citations (Scopus)

The laboratory domestication of Caenorhabditis elegans

Sterken, M. G., Snoek, L. B., Kammenga, J. E. & Andersen, E. C., 2015, In : Trends in Genetics. 31, 6, p. 224-231

Research output: Contribution to journalArticleAcademicpeer-review

58 Citations (Scopus)
2014

A heritable antiviral RNAi response limits Orsay virus infection in Caenorhabditis elegans N2

Sterken, M. G., Snoek, L. B., Bosman, K. J., Daamen, J., Riksen, J. A. G., Bakker, J., Pijlman, G. P. & Kammenga, J. E., 2014, In : PLoS ONE. 9, 2, e89760.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
16 Citations (Scopus)

A rapid and massive gene expression shift marking adolescent transition in C. elegans

Snoek, L. B., Sterken, M. G., Volkers, R. J. M., Klatter, M., Bosman, K. J., Bevers, R. P. J., Riksen, J. A. G., Smant, G., Cossins, A. R. & Kammenga, J. E., 2014, In : Scientific Reports. 4, 3912.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
18 Citations (Scopus)

Loss-of-function of b-catenin bar-1 slows development and activates the Wnt pathway in Caenorhabditis elegans

van der Bent, M. L., Sterken, M. G., Volkers, J. M., Riksen, J. A. G., Schmid, T., Hajnal, A., Kammenga, J. E. & Snoek, L. B., 2014, In : Scientific Reports. 4, 7 p., 4926.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Nematode endogenous small RNA pathways

Hoogstrate, S. W., Volkers, R. J. M., Sterken, M. G., Kammenga, J. E. & Snoek, L. B., 2014, In : Worm. 3, 1, 10 p., e28234.

Research output: Contribution to journalArticleAcademicpeer-review

Widespread Genomic Incompatibilities in Caenorhabditis elegans

Snoek, L. B., Orbidans, H. E., Stastna, J., Aartse, A., Rodriguez Sanchez, M., Riksen, J. A. G., Kammenga, J. E. & Harvey, S. C., 2014, In : G3 : Genes Genomes Genetics. 4, 10, p. 1813-1823

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
21 Citations (Scopus)

WormQTL HD—a web database for linking human disease to natural variation data in C. elegans

van der Velde, K. J., de Haan, M., Zych, K., Arends, D., Snoek, L. B., Kammenga, J. E., Jansen, R. C., Swertz, M. A. & Li, Y., 2014, In : Nucleic acids research. 42, D1, p. D794-D801

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
15 Citations (Scopus)

Worm variation made accessible: Take your shopping cart to store, link, and investigate!

Snoek, L. B., van der Velde, K. J., Li, Y., Jansen, R. C., Swertz, M. A. & Kammenga, J. E., 2014, In : Worm. 3, 1, 7 p., e28357.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2013

Benut variatie modelworm beter (interview met dr. ir. J.E. Kammenga en dr.ir. L.B. Snoek)

Kammenga, J. E., Snoek, L. B. & van Maanen, G., 2013, In : Bionieuws. 23, 14, p. 1-1

Research output: Contribution to journalArticleProfessional

Open Access

Gene-environment and protein degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations

Volkers, J. M., Snoek, L. B., van Hellenberg Hubar, C. J., Coopman, R., Chen, W., Yang, W., Sterken, M. G., Schulenburg, H., Braeckman, B. & Kammenga, J. E., 2013, In : BMC Biology. 11, 13 p., 93.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
29 Citations (Scopus)

Genetic mapping of variation in dauer larvae development in growing populations of Caenorhabditis elegans

Green, J. W. M., Snoek, L. B., Kammenga, J. E. & Harvey, S. C., 2013, In : Heredity. 111, p. 306-313 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

20 Citations (Scopus)

Maintenance of muscle myosin levels in adult C. elegans requires both the double bromodomain protein BET-1 and sumoylation

Fisher, K., Gee, F., Wang, S., Xue, F., Knapp, S., Philpott, M., Wells, C., Rodriguez, M., Snoek, L. B., Kammenga, J. E. & Poulin, G., 2013, In : Biology Open. 2, p. 1354-1363

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp

Snoek, L. B., van der Velde, K. J., Arends, D., Li, Y., Beyer, A., Elvin, M., Fisher, J., Hajnal, A., Hengartner, M., Poulin, G., Rodriguez Sanchez, M., Schmid, T., Schrimpf, S., Xue, F., Jansen, R. C., Kammenga, J. E. & Swertz, M. A., 2013, In : Nucleic acids research. 41, D1, p. D738-D743

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
22 Citations (Scopus)

Worms under stress: C. elegans stress response and its relevance to complex human disease and aging

Rodriguez Sanchez, M., Snoek, L. B., de Bono, M. & Kammenga, J. E., 2013, In : Trends in Genetics. 29, 6, p. 367-374

Research output: Contribution to journalArticleAcademicpeer-review

83 Citations (Scopus)
2012

Aging Uncouples Heritability and Expression-QTL in Caenorhabditis elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2012, In : G3 : Genes Genomes Genetics. 2, 5, p. 597-605

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
31 Citations (Scopus)

Genetic variation for stress-response hormesis in C. elegans lifespan

Rodriguez Sanchez, M., Snoek, L. B., Riksen, J. A. G., Bevers, R. P. J. & Kammenga, J. E., 2012, In : Experimental Gerontology. 47, 8, p. 581-587

Research output: Contribution to journalArticleAcademicpeer-review

40 Citations (Scopus)
2011

A fitness assay for comparing RNAi effects across multiple C. elegans genotypes

Elvin, M., Snoek, L. B., Frejno, M., Klemstein, U., Kammenga, J. E. & Poulin, G., 2011, In : BMC Genomics. 12, 14 p., 510.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
21 Citations (Scopus)

Gene Expression Modifications by Temperature-Toxicants Interactions in Caenorhabditis elegans

Vinuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2011, In : PLoS ONE. 6, 9, 11 p., e24676.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)
2010

Genome-Wide Gene Expression Analysis in Response to Organophosphorus Pesticide Chlorpyrifos and Diazion in C.Elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010, In : PLoS ONE. 5, 8, 8 p., e12145.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
35 Citations (Scopus)