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Research Output 1988 2019

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Abstract
2018
Meloidogyne incognita
root-knot nematodes
chromosome mapping
Arabidopsis thaliana
genome
2016

Discovery and identification of novel anti-viral alleles in Caenorhabditis elegans

van Sluijs, L., Sterken, M. G., Wang, Y., Snoek, L. B., Volkers, J. M., Riksen, J. A. G., Pijlman, G. P. & Kammenga, J. E., 2 Apr 2016.

Research output: Contribution to conferenceAbstractAcademic

Caenorhabditis elegans
alleles
genes
loci
quantitative trait loci

Natural Variation in Stress Response in C. elegans using a Novel Recombinant Inbred Panel

Stastna, J., Snoek, L. B., Riksen, J. A. G., Vujakovic, A., Schulenburg, H., Kammenga, J. E. & Harvey, S. C., Jul 2016.

Research output: Contribution to conferenceAbstractAcademic

Stress and recovery, natural variation, gene expression and QTL

Snoek, L. B., Jovic, K., Sterken, M. G. & Kammenga, J. E., 2016.

Research output: Contribution to conferenceAbstractAcademic

quantitative trait loci
heat stress
gene expression
inbred lines
stress response

Two complementary introgression line libraries in C. elegans

Sterken, M. G., van Creij, J., Riksen, J. A. G., Tan, B., Snoek, L. B. & Kammenga, J. E., 30 Mar 2016. 2 p.

Research output: Contribution to conferenceAbstractAcademic

introgression
genome
genetic background
loci
heat stress
2015

Opposite immune responses in Caenorhabditis elegans caused by a single gene, the neuropeptide receptor gene npr-1

Nakad, R., Snoek, L. B., Yang, W., Dierking, K., Rosenstiel, P. C., Kammenga, J. E. & Schulenburg, H., 2015, Proceedings of the 20th International C. elegans Meeting. Los Angeles, USA, p. 62-62

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Caenorhabditis elegans
immune response
avoidance behavior
Bacillus thuringiensis
Pseudomonas aeruginosa

Stress tolerance and lifespan in C. elegans are modulated by natural allelic variation in cmk-1

Sterken, M. G., Snoek, L. B., Bevers, R. P. J., Volkers, R. J. M., van 't Hof, A., Brenchley, R., Lehner, B., Cossins, A. & Kammenga, J. E., 2015, Proceedings of Molecular Biology of Ageing 2015. p. 134-134

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

stress tolerance
genes
loci
heat stress
gene expression
2014

Bar-1 loss-of-function causes a developmental delay in intertwined with a DAF-16 stress response

Sterken, M. G., van der Bent, M. L., Volkers, R. J. M., Riksen, J. A. G., Schmid, T., Hajnal, A., Kammenga, J. E. & Snoek, L. B., 2014, Proceedings of the Berlin C. elegans Meeting 2014. p. 241-241

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Wnt Signaling Pathway
Ovum
Gene Expression
Catenins
Genes

Dissecting the genetic architecture of resistance to orsay virus infection in C. elegans

Sterken, M. G., Wang, Y., Snoek, L. B., Volkers, R. J. M., Riksen, J. A. G., Bosman, K. J., Pijlman, G. P. & Kammenga, J. E., 2014, Proceedings of PhD Spring School Host-Microbe Interactomics. p. 12-12

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Virus Diseases
Viruses
Chromosomes
Host-Pathogen Interactions
RNA Interference

Dissecting the genetic architecture of resistance to orsay virus infection in C. elegans

Sterken, M. G., Wang, Y., Snoek, L. B., Volkers, R. J. M., Riksen, J. A. G., Bosman, K. J., Pijlman, G. P. & Kammenga, J. E., 2014, Proceedings of Evolutionary Biology of Caenorhabditis and other Nematodes. p. 111-111

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Virus Diseases
Viruses
Chromosomes
Host-Pathogen Interactions
RNA Interference

Genome wide mapping of stress-response and ageing pathway regulators

Sterken, M. G., Snoek, L. B., Bevers, R. P. J., Volkers, R. J. M., van 't Hof, A., Brenchley, R., van Cleef, E., Bartels, R., Laven, Y., Riksen, J. A. G., Cossins, A. R. & Kammenga, J. E., 2014, Proceedings of the Berlin C. elegans Meeting. p. 49-49

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Open Access
stress response
heat stress
genome
loci
genes

Identifying modifiers of Wnt and EGFR/RAS/MAPK signaling through quantitative C. elegans genetics

Maxeiner, S., Schmid, T., Snoek, L. B., Rodriguez Sanchez, M., Largey, F., van der Bent, L., Kammenga, J. E. & Hajnal, A. F., 2014, Proceedings of the FEBS-EMBO 2014. Vol. 281. p. 474-474

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Mutation
Modifier Genes
Gene Knockdown Techniques
Catenins
Vulva

Lifespan and the Effects of Dietary Restriction in a Multi-Parent Recombinant Inbred Line Panel in Caenorhabditis elegans

Stastna, J., Snoek, L. B., Volkers, R. J. M., Riksen, J. A. G., Kammenga, J. E. & Harvey, S., 2014, Proceedings of the Berlin C. elegans Meeting 2014. p. 240-240

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

dietary restriction
Caenorhabditis elegans
inbred lines
transgressive segregation
epistasis

Natural variation in lifespan and dietary restriction effects in a multi-parent recombinant inbred line panel in Caenorhabditis elegans

Stastna, J., Snoek, L. B., Volkers, R. J. M., Riksen, J. A. G., Schulenburg, H., Kammenga, J. E. & Harvey, S. C., 2014, Proceedings of The 2014 Evolution of Caenorhabditis and Other Nematodes Conference. p. 32-32

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

dietary restriction
Caenorhabditis elegans
inbred lines
quantitative trait loci
alleles

Next-gen genetical genomics; RNA-sequencing of a new multi-parent recombinant inbred line population of Caenorhabditis elegans

Snoek, L. B., Volkers, R. J. M., Nijveen, H., Sterken, M. G., Riksen, J. A. G., Braeckman, B., Schulenburg, H. J. G. & Kammenga, J. E., 2014, Proceedings of Evolutionary Biology of Caenorhabditis and other Nematodes. p. 77-77

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Caenorhabditis elegans
inbred lines
sequence analysis
RNA
genomics

Polymorphic regions and genes affecting gene transcription regulation of stress response and prolonged lifespan

Sterken, M. G., Snoek, L. B., Bevers, R. P. J., Volkers, R. J. M., van 't Hof, A., Brenchley, R., van Cleef, E., Bartels, R., Laven, Y., Riksen, J. A. G., Valba, O., Chavali, S., Lang, B., Francesconi, M., Bot, J., Nechaev, S., Vasieva, O., Babu, M., Lehner, B., Cossins, A. & 1 othersKammenga, J. E., 2014, Proceedings of Evolutionary Biology of Caenorhabditis and other Nematodes. p. 33-33

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

stress response
transcription (genetics)
genes
gene expression
introgression

The effects of development on gene expression in L4 Caenorhabditis elegans larvae

Riksen, J. A. G., Snoek, L. B., Sterken, M. G., Volkers, R. J. M., Klatter, M., Bosman, K., Bevers, R. P. J., Smant, G., Cossins, A. R. & Kammenga, J. E., 2014, Proceedings of the Berlin C. elegans Meeting. p. 215-215

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Caenorhabditis elegans
gene expression
larvae
genes
time series analysis

The mysterious role of the C.elegans nuclear hormone receptor NPR-1 in pathogen defense

Nakad, R., Snoek, L. B., Dierking, K., Yang, W., Kammenga, J. E. & Schulenburg, H., 2014, Proceedings of the Berlin C. elegans Meeting 2014. p. 194-194

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

hormone receptors
Caenorhabditis elegans
avoidance behavior
Bacillus thuringiensis
microorganisms
2013

Comparative proteomics and transcriptomics in two C. elegans wild-type strains

Kamkina, P., Daube, M., Roschitzki, B., Grossmann, J., Volkers, J. M., Snoek, L. B., Kammenga, J. E., Schrimpf, S. & Hengartner, M., 2013, Proceedings of the 19th International C.elegans Meeting, 26-30 June 2013, Los Angeles, California, USA. p. 399-399

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Gene-environments interactions drive genomics and transcriptomic diversity in wild Caenorhabditis elegans populations

Volkers, J. M., Snoek, L. B., van Hellenberg Hubar, C. J., Coopman, R., Chen, W., Sterken, M. G., Schulenburg, H., Braekman, B. & Kammenga, J. E., 2013, Proceedings of the 19th International C.elegans Meeting, 26-30 June 2013, Los Angeles, California, USA. p. 317-317

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Genetic basis underlying differential susceptibility to bacteria in Caenorhabditis elegans

Wang, Z., Herman, M., Snoek, L. B. & Kammenga, J. E., 2013, Proceedings of the 19th International C.elegans Meeting, 26-30 June 2013, Los Angeles, California, USA. p. 184-184

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Natural variation in Monoamine Oxidase A modulates RAS/MAPK pathway activity during C. elegans vulval development

Schmid, T., Snoek, L. B., Rodriguez, M., van der Bent, L., Despot Slade, E., Kammenga, J. E. & Hajnal, A., 2013, Proceedings of the 5th EMBO meeting, 21-24 September 2013, Amsterdam, the Netherlands. p. 49-49

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Monoamine Oxidase
Gene Transfer Techniques
Mutation
Biogenic Amines
Penetrance

Orsay Virus infection dynamics in Caenorhabditis elegans

Sterken, M. G., Snoek, L. B., Bosman, K., Daamen, J., Riksen, J. A. G., Bakker, J., Pijlman, G. P. & Kammenga, J. E., 2013, Proceedings of the 5th EMBO meeting 2013, 21-24 September 2013, Amsterdam, the Netherlands. p. 113-114

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Caenorhabditis elegans
Virus Diseases
RNA Interference
Viruses
Infection

Orsay virus replication kinetics in C. elegans strain Bristol N2

Sterken, M. G., Bosman, K., Snoek, L. B., Daamen, J., Riksen, J. A. G., Bakker, J., Pijlman, G. P. & Kammenga, J. E., 2013, Proceedings of the 19th International C.elegans Meeting, 26-30 June 2013, Los Angeles, California, USA. p. 341-341

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Studying the effect of natural variation on protein abundance in C. elegans

Singh, K. D., Kamkina, P., Roschitzki, B., Elvin, M., Rodriguez, M., Poulin, G., Snoek, L. B., Kammenga, J. E., Schrimpf, S. & Hengartner, M., 2013, Proceedings of the 19th International C.elegans Meeting, 26-30 June 2013, Los Angeles, California, USA. p. 399-399

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

The sudden transcriptional switch to adulthood in L4 stage C. elegans

Snoek, L. B., Sterken, M. G., Volkers, J. M., Klatter, M., Bosman, K., Bevers, R. P. J., Riksen, J. A. G. & Kammenga, J. E., 2013, Proceedings of the 19th International C.elegans Meeting, 26-30 June 2013, Los Angeles, California, USA. p. 331-331

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Uncovering genotype variation of Wnt signaling in C. elegans

Rodriguez, M., Snoek, L. B., Schmid, T., Samadi, N., van der Bent, L., Hajnal, A. & Kammenga, J. E., 2013, Proceedings of the 19th International C.elegans Meeting, 26-30 June 2013, Los Angeles, California, USA. p. 330-331

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Uncovering hidden Wnt/beta-catenin enhancer in Caenorhabditis elegans

Rodriguez, M., Snoek, L. B., Schmid, T., Riksen, J. A. G., Samadi, N., van der Bent, L., Grolleman, J., Hajnal, A. & Kammenga, J. E., 2013, Proceedings of 1st Annual Meeting, COST FA 1208, 09-11 October 2013, Birnam, Scotland. p. 55-55

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Caenorhabditis elegans
beta Catenin
Genotype
Catenins
Wnt Signaling Pathway

Widespread pleiotropic Bateson-Dobzhansky-Muller incompatibilities between C. elegans isolates

Orbidans, H. E., Snoek, L. B., Stastna, J., Kammenga, J. E. & Harvey, S. C., 2013, 19th International C.elegans Meeting, 26-30 June 2013, Los Angeles, California, USA. Genetics Society of America, p. 311-311

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

2012

A fitness assay for comparing RNAi effects across multiple C. elegans genotypes

Elvin, M., Snoek, L. B., Frejno, M., Klemstein, U., Kammenga, J. E. & Poulin, G., 2012, Abstracts of papers presented at the Evolution of Caenorhabditis and Other Nematodes, Cold Spring Harbor Laboratory, New York, USA, 3-6 April 2012. p. 46-46

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

quantitative trait loci
genotype
assays
Hawaii
nematology

Combining genetic variation with targeted knock-downs/outs to understand complex human disease pathways in C.elegans

Kammenga, J. E., 2012, 4th International conference on Quantitative Genetics: Understanding Variation in Complex Traits, Edinburgh, Scotland, 17-22 June, 2012. Edinburgh, Scotland: ICQG2012, p. 86-86

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Combining natural genetic variation and vulval development mutants in Caenorhabditis elegans to understand complex human disease pathways

Rodriguez Sanchez, M., Snoek, L. B., Schmid, T., Hajnal, A. & Kammenga, J. E., 2012, Model Organisms to Human Biology: Cancer Genetics, Washington, USA, 17-20 June, 2012. Washington, USA: The Genetics Society of America, p. 89-90

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Genomic and phenotypic differences in Caenorhabditis elegans isolated from different habitats

Volkers, R. J. M., Snoek, L. B., Riksen, J. A. G., Schulenburg, H., Braeckman, B. & Kammenga, J. E., 2012, Abstracts of papers presented at the Evolution of Caenorhabditis and Other Nematodes, Cold Spring Harbor Laboratory, New York, USA, 3-6 April 2012. p. 92-92

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Caenorhabditis elegans
genomics
habitats
selection response
nematology

Identification of polymorphic modifiers of ras and wnt signaling in C. elegans

Schmid, T., Largey, F., Rodriguez Sanchez, M., Snoek, L. B., Kammenga, J. E. & Hajnal, A., 2012, 4th International conference on Quantitative Genetics: Understanding Variation in Complex Traits, Edinburgh, Scotland, 17-22 June, 2012. Edinburgh, Scotland: ICQG2012, p. 224-224

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

The biological relevance of eQTLs: A genome wide confirmation of eQTLs using two types of inbred populations in C. elegans

Sterken, M. G., Snoek, L. B., Bevers, R. P. J., Brenchley, R. C., van 't Hof, A. E., Cossins, A. R. & Kammenga, J. E., 2012, 4th International Conference on Quantitative Genetics: Understanding Variation in Complex Traits, Edinburgh, Scotland, 17-22 June, 2012. Edinburgh, Scotland: ICQG2012, p. 47-47

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

The genetic architecture of the transcriptional response to heat-shock in C. elegans

Sterken, M. G., Snoek, L. B., Bevers, R. P. J., Brenchley, R., van 't Hof, A., Cossins, A. R. & Kammenga, J. E., 2012, Abstracts of papers presented at the Evolution of Caenorhabditis and Other Nematodes, Cold Spring Harbor Laboratory, New York, USA, 3-6 April 2012. p. 102-102

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

heat stress
inbred lines
quantitative trait loci
introgression
genotype

Unveiling cryptic genetic variation in C. elegans

Kammenga, J. E., 2012, Abstracts of papers presented at the Evolution of Caenorhabditis and Other Nematodes, Cold Spring Harbor Laboratory, New York, USA, 3-6 April 2012. p. 94-94

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

genetic variation
nematology
mutants
quantitative traits
mutagenesis

WormQTL – Public archive and analysis web portal for C. elegans natural variation data

Snoek, L. B., Li, Y., van der Velde, J. K., Arends, D., Beyer, A., Elvin, M., Fisher, J., Hajnal, A., Hengartner, M., Poulin, G., Rodriguez Sanchez, M., Schmid, T., Schrimpf, S., Xue, F., Zheng, X., Jansen, R. C., Kammenga, J. E. & Swertz, M. A., 2012, Abstracts of papers presented at the Evolution of Caenorhabditis and Other Nematodes, Cold Spring Harbor Laboratory, New York, USA, 3-6 April 2012. p. 48-48

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

life science
genomics
software
bioinformatics
meta-analysis

“All” the sequence polymorphisms between Hawaii (CB4856) and Bristol (N2)

Snoek, L. B., Brenchley, R., van 't Hof, A., Bevers, R. P. J., de Bono, M., Hajnal, A., Schmid, T., Weber, K., Francesconi, M., Lehner, B., Cossins, A. & Kammenga, J. E., 2012, Abstracts of papers presented at the Evolution of Caenorhabditis and Other Nematodes, Cold Spring Harbor Laboratory, New York, USA, 3-6 April 2012. p. 47-47

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Hawaii
genetic polymorphism
genome
amino acids
United Kingdom
2011

Combining Genetic Variation with Targeted Knock-downs to Construct Gene Networks of Complex Human Diseases in C. elegans

Kammenga, J. E., Fisher, J., Li, Y., Swertz, M. A., Elvin, M., Poulin, G., Snoek, L. B., Rodriguez Sanchez, M., Beyer, A., Schrimpf, S., van de Velde, J., Escobar, J., Schmid, T., Zheng, C., Hajnal, A., Hengartner, M. & Jansen, R., 2011, Abstract Book of the 12th International Conference on Systems Biology, Heidelberg/Mannheim, Germany, 28 August - 1 September 2011. Heidelberg: IBM System Storage Solutions, p. 116-116

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Gene Regulatory Networks
RNA Interference
Genes
Gene Knockdown Techniques
Vulva

QTLs and Implications for Network Analysis

Snoek, L. B., Sterken, M. G., Bevers, R. P. J., Ashelford, K., van 't Hoff, C. A., Vasieva, O., Cossins, A. R. & Kammenga, J. E., 2011, Abstract Book of the 12th International Conference on Systems Biology, Heidelberg/Mannheim, Germany, 28 August - 1 September 2011. Heidelberg: IBM System Storage Solutions, p. 119-119

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

2010

Genetic architecture of natural variation in caenorhabditis elegans pathogen avoidance

Nakad, R., Kammenga, J. E. & van de Schulenburg, J. H. G., 2010, Scientific Conference on Evolutionary Biology of Caenorhabditis and other Nematodes, Hinxton, Cambridge, UK, 5-8 June 2010. p. P35-P35

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Heritable Expression Regulation in Aging C.Elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010.

Research output: Contribution to conferenceAbstractAcademic

Heritable expression regulation in aging C. elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010, Scientific Conference on Evolutionary Biology of Caenorhabditis and other Nematodes, Hinxton, Cambridge, UK, 5-8 June 2010. Cambridge, p. T29-T29

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Natural variation of genome-wide transcription underlying longevity and stress response in C. Elegans

Rodriguez Sanchez, M., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010, Scientific Conference on Evolutionary Biology of Caenorhabditis and other Nematodes, Hinxton, Cambridge, UK, 5-8 June 2010. p. P49-P49

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Next-gen transcriptiome sequencing reveals polymorphisms and expression differences between two C.elegans wildtype isolates, CB4856 and N2

Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010, Scientific Conference on Evolutionary Biology of Caenorhabditis and other Nematodes, Hinxton, Cambridge, UK, 5-8 June 2010. p. P67-P67

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

The genetic basis of plasticity in C. Elegans responses to soil bacteria

Herman, M. A., Wang, Z., Snoek, L. B. & Kammenga, J. E., 2010, Scientific Conference on Evolutionary Biology of Caenorhabditis and other Nematodes, Hinxton, Cambridge, UK, 5-8 June 2010. p. P25-P25

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Transcriptional consequences of recombination in aging C. elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010, Scientific Conference on Evolutionary Biology of Caenorhabditis and other Nematodes, Hinxton, Cambridge, UK, 5-8 June 2010. p. P71-P71

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

2009

Genome-wide evidence for genetic robustness of the alternative: splicing machinery in C. Elegans

Snoek, L. B., Li, Y., Breitling, R., Riksen, J. A. G., Jansen, R. C. & Kammenga, J. E., 2009, Program and abstracts of the 17th International C. Elegans meeting: University of California, Los Angeles, June 24-28, 2009. p. 404 (974B)

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Open Access

Identification of QTL involved in the C. Elegans response to soil bacteria

Herman, M. A., Snoek, L. B., Wang, Z. & Kammenga, J. E., 2009, 17th International C. Elegans Meeting, Los Angeles, California, 24-28 June 2009. p. 169

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic