If you made any changes in Pure these will be visible here soon.

Research Output 1988 2020

2013

Widespread pleiotropic Bateson-Dobzhansky-Muller incompatibilities between C. elegans isolates

Orbidans, H. E., Snoek, L. B., Stastna, J., Kammenga, J. E. & Harvey, S. C., 2013, 19th International C.elegans Meeting, 26-30 June 2013, Los Angeles, California, USA. Genetics Society of America, p. 311-311

Research output: Chapter in Book/Report/Conference proceedingAbstract

22 Citations (Scopus)

WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp

Snoek, L. B., van der Velde, K. J., Arends, D., Li, Y., Beyer, A., Elvin, M., Fisher, J., Hajnal, A., Hengartner, M., Poulin, G., Rodriguez Sanchez, M., Schmid, T., Schrimpf, S., Xue, F., Jansen, R. C., Kammenga, J. E. & Swertz, M. A., 2013, In : Nucleic acids research. 41, D1, p. D738-D743

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Caenorhabditis
Caenorhabditis elegans
Systems Biology
Chromosome Mapping
Meta-Analysis
77 Citations (Scopus)

Worms under stress: C. elegans stress response and its relevance to complex human disease and aging

Rodriguez Sanchez, M., Snoek, L. B., de Bono, M. & Kammenga, J. E., 2013, In : Trends in Genetics. 29, 6, p. 367-374

Research output: Contribution to journalArticleAcademicpeer-review

Heat-Shock Response
Osmotic Pressure
Caenorhabditis elegans
Medical Genetics
Drug Discovery
2012

A fitness assay for comparing RNAi effects across multiple C. elegans genotypes

Elvin, M., Snoek, L. B., Frejno, M., Klemstein, U., Kammenga, J. E. & Poulin, G., 2012, Abstracts of papers presented at the Evolution of Caenorhabditis and Other Nematodes, Cold Spring Harbor Laboratory, New York, USA, 3-6 April 2012. p. 46-46

Research output: Chapter in Book/Report/Conference proceedingAbstract

quantitative trait loci
genotype
assays
Hawaii
nematology
31 Citations (Scopus)

Aging Uncouples Heritability and Expression-QTL in Caenorhabditis elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2012, In : G3 : Genes Genomes Genetics. 2, 5, p. 597-605

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Caenorhabditis elegans
Gene Expression
Gene Expression Regulation
Transcriptome
Population

Combining genetic variation with targeted knock-downs/outs to understand complex human disease pathways in C.elegans

Kammenga, J. E., 2012, 4th International conference on Quantitative Genetics: Understanding Variation in Complex Traits, Edinburgh, Scotland, 17-22 June, 2012. Edinburgh, Scotland: ICQG2012, p. 86-86

Research output: Chapter in Book/Report/Conference proceedingAbstract

Combining natural genetic variation and vulval development mutants in Caenorhabditis elegans to understand complex human disease pathways

Rodriguez Sanchez, M., Snoek, L. B., Schmid, T., Hajnal, A. & Kammenga, J. E., 2012, Model Organisms to Human Biology: Cancer Genetics, Washington, USA, 17-20 June, 2012. Washington, USA: The Genetics Society of America, p. 89-90

Research output: Chapter in Book/Report/Conference proceedingAbstract

40 Citations (Scopus)

Genetic variation for stress-response hormesis in C. elegans lifespan

Rodriguez Sanchez, M., Snoek, L. B., Riksen, J. A. G., Bevers, R. P. J. & Kammenga, J. E., 2012, In : Experimental Gerontology. 47, 8, p. 581-587

Research output: Contribution to journalArticleAcademicpeer-review

Hormesis
Hot Temperature
Quantitative Trait Loci
Shock
Chromosomes

Genomic and phenotypic differences in Caenorhabditis elegans isolated from different habitats

Volkers, R. J. M., Snoek, L. B., Riksen, J. A. G., Schulenburg, H., Braeckman, B. & Kammenga, J. E., 2012, Abstracts of papers presented at the Evolution of Caenorhabditis and Other Nematodes, Cold Spring Harbor Laboratory, New York, USA, 3-6 April 2012. p. 92-92

Research output: Chapter in Book/Report/Conference proceedingAbstract

Caenorhabditis elegans
genomics
habitats
selection response
nematology

Identification of polymorphic modifiers of ras and wnt signaling in C. elegans

Schmid, T., Largey, F., Rodriguez Sanchez, M., Snoek, L. B., Kammenga, J. E. & Hajnal, A., 2012, 4th International conference on Quantitative Genetics: Understanding Variation in Complex Traits, Edinburgh, Scotland, 17-22 June, 2012. Edinburgh, Scotland: ICQG2012, p. 224-224

Research output: Chapter in Book/Report/Conference proceedingAbstract

The biological relevance of eQTLs: A genome wide confirmation of eQTLs using two types of inbred populations in C. elegans

Sterken, M. G., Snoek, L. B., Bevers, R. P. J., Brenchley, R. C., van 't Hof, A. E., Cossins, A. R. & Kammenga, J. E., 2012, 4th International Conference on Quantitative Genetics: Understanding Variation in Complex Traits, Edinburgh, Scotland, 17-22 June, 2012. Edinburgh, Scotland: ICQG2012, p. 47-47

Research output: Chapter in Book/Report/Conference proceedingAbstract

The genetic architecture of the transcriptional response to heat-shock in C. elegans

Sterken, M. G., Snoek, L. B., Bevers, R. P. J., Brenchley, R., van 't Hof, A., Cossins, A. R. & Kammenga, J. E., 2012, Abstracts of papers presented at the Evolution of Caenorhabditis and Other Nematodes, Cold Spring Harbor Laboratory, New York, USA, 3-6 April 2012. p. 102-102

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

heat stress
inbred lines
quantitative trait loci
introgression
genotype

Unveiling cryptic genetic variation in C. elegans

Kammenga, J. E., 2012, Abstracts of papers presented at the Evolution of Caenorhabditis and Other Nematodes, Cold Spring Harbor Laboratory, New York, USA, 3-6 April 2012. p. 94-94

Research output: Chapter in Book/Report/Conference proceedingAbstract

genetic variation
nematology
mutants
quantitative traits
mutagenesis

WormQTL – Public archive and analysis web portal for C. elegans natural variation data

Snoek, L. B., Li, Y., van der Velde, J. K., Arends, D., Beyer, A., Elvin, M., Fisher, J., Hajnal, A., Hengartner, M., Poulin, G., Rodriguez Sanchez, M., Schmid, T., Schrimpf, S., Xue, F., Zheng, X., Jansen, R. C., Kammenga, J. E. & Swertz, M. A., 2012, Abstracts of papers presented at the Evolution of Caenorhabditis and Other Nematodes, Cold Spring Harbor Laboratory, New York, USA, 3-6 April 2012. p. 48-48

Research output: Chapter in Book/Report/Conference proceedingAbstract

life science
genomics
software
bioinformatics
meta-analysis

“All” the sequence polymorphisms between Hawaii (CB4856) and Bristol (N2)

Snoek, L. B., Brenchley, R., van 't Hof, A., Bevers, R. P. J., de Bono, M., Hajnal, A., Schmid, T., Weber, K., Francesconi, M., Lehner, B., Cossins, A. & Kammenga, J. E., 2012, Abstracts of papers presented at the Evolution of Caenorhabditis and Other Nematodes, Cold Spring Harbor Laboratory, New York, USA, 3-6 April 2012. p. 47-47

Research output: Chapter in Book/Report/Conference proceedingAbstract

Hawaii
genetic polymorphism
genome
amino acids
United Kingdom
2011
21 Citations (Scopus)

A fitness assay for comparing RNAi effects across multiple C. elegans genotypes

Elvin, M., Snoek, L. B., Frejno, M., Klemstein, U., Kammenga, J. E. & Poulin, G., 2011, In : BMC Genomics. 12, 14 p., 510.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
RNA Interference
Genotype
Population
Escherichia coli
Developmental Biology

Combining Genetic Variation with Targeted Knock-downs to Construct Gene Networks of Complex Human Diseases in C. elegans

Kammenga, J. E., Fisher, J., Li, Y., Swertz, M. A., Elvin, M., Poulin, G., Snoek, L. B., Rodriguez Sanchez, M., Beyer, A., Schrimpf, S., van de Velde, J., Escobar, J., Schmid, T., Zheng, C., Hajnal, A., Hengartner, M. & Jansen, R., 2011, Abstract Book of the 12th International Conference on Systems Biology, Heidelberg/Mannheim, Germany, 28 August - 1 September 2011. Heidelberg: IBM System Storage Solutions, p. 116-116

Research output: Chapter in Book/Report/Conference proceedingAbstract

Gene Regulatory Networks
RNA Interference
Genes
Gene Knockdown Techniques
Vulva
10 Citations (Scopus)

Gene Expression Modifications by Temperature-Toxicants Interactions in Caenorhabditis elegans

Vinuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2011, In : PLoS ONE. 6, 9, 11 p., e24676.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
organophosphorus pesticides
Caenorhabditis elegans
toxic substances
Pesticides
Gene expression

Genetic architecture of natural variation in Caenorhabditis elegans pathogen avoidance

Nakad, R., Snoek, L. B., Ellendt, S., Mohr, T. G., Dierking, K., Kammenga, J. E. & van de Schulenburg, J. H. G., 2011.

Research output: Contribution to conferencePosterProfessional

Open Access

Genome-wide conformation of expression QTLs

Snoek, L. B., Bevers, R. P. J., Sterken, M. G., van 't Hof, A., Ashelford, K., Cossins, A. R. & Kammenga, J. E., 2011.

Research output: Contribution to conferencePosterProfessional

QTLs and Implications for Network Analysis

Snoek, L. B., Sterken, M. G., Bevers, R. P. J., Ashelford, K., van 't Hoff, C. A., Vasieva, O., Cossins, A. R. & Kammenga, J. E., 2011, Abstract Book of the 12th International Conference on Systems Biology, Heidelberg/Mannheim, Germany, 28 August - 1 September 2011. Heidelberg: IBM System Storage Solutions, p. 119-119

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Quantitative pathway analysis of natural variation in complex disease signaling in C. elegans

Zheng, C., Li, X., Laczko, E., Elvin, M., Poulin, G., Snoek, L. B., Kammenga, J. E., Jovanovic, M., Schrimpf, S. & Hengartner, M., 2011.

Research output: Contribution to conferencePosterProfessional

2010

Genetic architecture of natural variation in caenorhabditis elegans pathogen avoidance

Nakad, R., Kammenga, J. E. & van de Schulenburg, J. H. G., 2010, Scientific Conference on Evolutionary Biology of Caenorhabditis and other Nematodes, Hinxton, Cambridge, UK, 5-8 June 2010. p. P35-P35

Research output: Chapter in Book/Report/Conference proceedingAbstract

34 Citations (Scopus)

Genome-Wide Gene Expression Analysis in Response to Organophosphorus Pesticide Chlorpyrifos and Diazion in C.Elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010, In : PLoS ONE. 5, 8, 8 p., e12145.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Diazinon
Chlorpyrifos
organophosphorus pesticides
chlorpyrifos
Caenorhabditis elegans
72 Citations (Scopus)

Genome-wide gene expression regulation as a function of genotype and age in C. elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010, In : Genome Research. 20, 7, p. 929-937

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Expression Regulation
Genotype
Genome
Genes
Gene Expression
35 Citations (Scopus)

Global Genetic Robustness of the Alternative Splicing Machinery in Caenorhabditis elegans

Li, Y., Breitling, R., Snoek, L. B., van der Velde, K. J., Swertz, M. A., Riksen, J. A. G., Jansen, R. C. & Kammenga, J. E., 2010, In : Genetics. 186, p. 405-410

Research output: Contribution to journalArticleAcademicpeer-review

Caenorhabditis elegans
Alternative Splicing
Genome
Genes
Quantitative Trait Loci

Heritable Expression Regulation in Aging C.Elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010.

Research output: Contribution to conferenceAbstractAcademic

Heritable expression regulation in aging C. elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010, Scientific Conference on Evolutionary Biology of Caenorhabditis and other Nematodes, Hinxton, Cambridge, UK, 5-8 June 2010. Cambridge, p. T29-T29

Research output: Chapter in Book/Report/Conference proceedingAbstract

Heritable Expression Regulation in Aging C. Elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010.

Research output: Contribution to conferencePosterProfessional

Open Access

Natural variation of genome-wide transcription underlying longevity and stress response in C. Elegans

Rodriguez Sanchez, M., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010, Scientific Conference on Evolutionary Biology of Caenorhabditis and other Nematodes, Hinxton, Cambridge, UK, 5-8 June 2010. p. P49-P49

Research output: Chapter in Book/Report/Conference proceedingAbstract

Natural variation of the dynamics of global gene transcription regulation in aging worms

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010.

Research output: Contribution to conferencePosterProfessional

Next-gen transcriptiome sequencing reveals polymorphisms and expression differences between two C.elegans wildtype isolates, CB4856 and N2

Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010, Scientific Conference on Evolutionary Biology of Caenorhabditis and other Nematodes, Hinxton, Cambridge, UK, 5-8 June 2010. p. P67-P67

Research output: Chapter in Book/Report/Conference proceedingAbstract

The genetic basis of plasticity in C. Elegans responses to soil bacteria

Herman, M. A., Wang, Z., Snoek, L. B. & Kammenga, J. E., 2010, Scientific Conference on Evolutionary Biology of Caenorhabditis and other Nematodes, Hinxton, Cambridge, UK, 5-8 June 2010. p. P25-P25

Research output: Chapter in Book/Report/Conference proceedingAbstract

Transcriptional consequences of recombination in aging C. elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2010, Scientific Conference on Evolutionary Biology of Caenorhabditis and other Nematodes, Hinxton, Cambridge, UK, 5-8 June 2010. p. P71-P71

Research output: Chapter in Book/Report/Conference proceedingAbstract

2009
50 Citations (Scopus)

A genome-wide library of CB4856/N2 introgression lines of Caenorhabditis elegans

Doroszuk, A., Snoek, L. B., Fradin, E., Riksen, J. A. G. & Kammenga, J. E., 2009, In : Nucleic acids research. 37, 16, p. e110 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genomic Library
Caenorhabditis elegans
Libraries
Chromosome Mapping
Genetic Association Studies

Genome-wide evidence for genetic robustness of the alternative: splicing machinery in C. Elegans

Snoek, L. B., Li, Y., Breitling, R., Riksen, J. A. G., Jansen, R. C. & Kammenga, J. E., 2009, Program and abstracts of the 17th International C. Elegans meeting: University of California, Los Angeles, June 24-28, 2009. p. 404 (974B)

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Identification of QTL involved in the C. Elegans response to soil bacteria

Herman, M. A., Snoek, L. B., Wang, Z. & Kammenga, J. E., 2009, 17th International C. Elegans Meeting, Los Angeles, California, 24-28 June 2009. p. 169

Research output: Chapter in Book/Report/Conference proceedingAbstract

Mapping Quantitative Trait Loci Involved in Caenorhabditis elegans Response to Soil Bacteria

Wang, Z., Herman, M. A., Snoek, L. B. & Kammenga, J. E., 2009, Poster abstracts of the Ecological Genomics Symposium: Genes in Ecology. Ecology in Genes, November 13-15, 2009, Kansas, USA. Kansas City, p. 28 (53)

Research output: Chapter in Book/Report/Conference proceedingAbstract

Stenotrophomonas maltophilia
soil bacteria
Caenorhabditis elegans
quantitative trait loci
soil nematodes

Natural variation of the dynamics of global gene transcription: regulation in aging worms

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2009, Program and abstracts of the 17th International C. Elegans meeting, University of California, Los Angeles, June 24-28, 2009. Los Angeles, p. 355 (832A)

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Natural variation of the dynamics of global gene transcription: regulation in aging worms

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2009, European Conference on Complex Systems' 09, Warwick, UK, 21-25 September 2009. Warwick, p. 144-144

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access
Genes
Diptera
Genome
Chromosome Mapping
Caenorhabditis elegans

Natural variation of the dynamics of global gene transcription regulation in aging worms

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2009, Abstract book of the 1 symposium on Systems Genetics: from man to microbe, from genotype to phenotype, Groningen, The Netherlands, 1-2 October 2009. p. 56

Research output: Chapter in Book/Report/Conference proceedingAbstract

Natural variation reveals the autophagy gene unc-51 as a key connection between sex and death in C. Elegans

Snoek, L. B., Viñuela Rodriguez, A., Gutteling, E. W., Riksen, J. A. G. & Kammenga, J. E., 2009, Program and abstracts of the 17th International C. Elegans meeting, University of California, Los Angeles, June 24-28, 2009. Los Angeles, p. 184 (328A)

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Nematicidal activity of plant extracts against the root-knot nematode, Meloidogyne incognita

Wiratno, Taniwiryono, D., van den Berg, J. H. J., Riksen, J. A. G., Rietjens, I., Djiwanti, S. R., Kammenga, J. E. & Murk, A. J., 2009, In : The Open Natural Products Journal. 2, p. 77-85

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tylenchoidea
Syzygium
Plant Extracts
Pesticides
Acorus

The transcriptional architecture of the trade-off between lifespan and offspring

Snoek, L. B., Viñuela Rodriguez, A., Gutteling, E. W., Doroszuk, A., Riksen, J. A. G. & Kammenga, J. E., 2009, Abstracts ESEB, 24-29 September 2009, Torino, Italy. Torino: ESEB, p. 10-60 Poster

Research output: Chapter in Book/Report/Conference proceedingAbstract

life history
genes
mutagenesis
inbred lines
chromosome mapping

The transcriptional mechanisms of organophosphorus pesticide mixtures in C. Elegans

Viñuela Rodriguez, A., Snoek, L. B., Riksen, J. A. G. & Kammenga, J. E., 2009, 17th International C. Elegans Meeting, Los Angeles, California, 24-28 June 2009. Los Angeles, p. 379

Research output: Chapter in Book/Report/Conference proceedingAbstract

2008
37 Citations (Scopus)

Beyond induced mutants: using worms to study natural variation in genetic pathways

Kammenga, J. E., Philips, P. C., de Bono, M. & Doroszuk, A., 2008, In : Trends in Genetics. 24, 4, p. 178-185

Research output: Contribution to journalArticleAcademicpeer-review

Caenorhabditis
Caenorhabditis elegans
Mutation
Genetic Phenomena
Phenotype
36 Citations (Scopus)

Rapid Divergence of Genetic Variance-Covariance Matrix within a Natural Population

Doroszuk, A., Wojewodzic, M. W., Gort, G. & Kammenga, J. E., 2008, In : American Naturalist. 171, 3, p. 291-304

Research output: Contribution to journalArticleAcademicpeer-review

genetic variance
divergence
matrix
Acrobeloides
genetic covariance

The genetic architecture of life-history variation

Kammenga, J. E. & Snoek, L. B., 2008, Keystone symposia on Molecular and Cellular Biology 2008 abstract book, February 29 - March 5, 2008, Santa Fe, New Mexico, USA. Silverthorne, p. 54-54

Research output: Chapter in Book/Report/Conference proceedingAbstract

2007
63 Citations (Scopus)

A Caenorhabditis elegans Wild Type Defies the Temperature-Size Rule Owing to a Single Nucleotide Polymorphism in tra-3

Kammenga, J. E., Doroszuk, A., Riksen, J. A. G., Hazendonk, E., Spiridon, L. N., Petrescu, A. J., Tijsterman, M., Plasterk, R. H. A. & Bakker, J., 2007, In : Plos Genetics. 3, 3, e34.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Caenorhabditis elegans
single nucleotide polymorphism
Single Nucleotide Polymorphism
polymorphism
Temperature

Adaptation to multiple stressors through stress-specific mechnisms in natural populations

Doroszuk, A., Garcia-Gallego, R. & Kammenga, J. E., 2007, XI Congress European Society for Evolutionary Biology, 20-25 August, 2007, Uppsala, Sweden. Uppsala, p. 48

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access