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Research Output 2003 2019

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Article
2019

Assessment of sire contribution and breed-of-origin of alleles in a three-way crossbred broiler dataset

Calus, M. P. L., Vandenplas, J., Hulsegge, I., Borg, R., Henshall, J. M. & Hawken, R., 1 Dec 2019, In : Poultry Science. 98, 12, p. 6270-6280 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
sires
purebreds
crossbreds
broiler chickens
alleles
1 Citation (Scopus)

Boosted trees to predict pneumonia, growth, and meat percentage of growing-finishing pigs

Mollenhorst, H., Ducro, B. J., de Greef, K. H., Hulsegge, I. & Kamphuis, C., 3 Oct 2019, In : Journal of Animal Science. 97, 10, p. 4152-4159

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Meat
pneumonia
finishing
Pneumonia
Swine
1 Citation (Scopus)

Development of a genetic tool for determining breed purity of cattle

Hulsegge, I., Schoon, M., Windig, J., Neuteboom, M., Hiemstra, S. J. & Schurink, A., 1 May 2019, In : Livestock Science. 223, p. 60-67 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
purity
breeds
cattle
Pedigree
purebreds

Impact of merging commercial breeding lines on the genetic diversity of Landrace pigs

Hulsegge, I., Calus, M., Hoving-Bolink, R., Lopes, M., Megens, H. J. & Oldenbroek, K., 29 Oct 2019, In : Genetics Selection Evolution. 51, 1, 60.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Dutch Landrace
breeding lines
pig
landraces
Breeding

Plasticity of intestinal gene expression profile signatures reflected by nutritional interventions in piglets

Schokker, D., Hulsegge, I., Woelders, H. & Rebel, J. M. J., 23 May 2019, In : BMC Genomics. 20, 1, 414.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Transcriptome
Biological Phenomena
Meta-Analysis
Jejunum
Gene Expression
2018

A time-series approach for clustering farms based on slaughterhouse health aberration data

Hulsegge, I. & de Greef, K. H., 1 May 2018, In : Preventive Veterinary Medicine. 153, p. 64-70

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Abattoirs
slaughterhouses
Cluster Analysis
time series analysis
farms

Met DNA-onderzoek aantonen tot welk ras een rund behoort

Schoon, M., Hulsegge, B., Schurink, A. & Hiemstra, S. J., 15 Aug 2018, In : Zeldzaam huisdier. 43, 3, p. 10-11

Research output: Contribution to journalArticlePopular

Open Access
2 Citations (Scopus)

The impact of using old germplasm on genetic merit and diversity - A cattle breed case study

Eynard, S. E., Windig, J. J., Hulsegge, I., Hiemstra, S. J. & Calus, M. P. L., Aug 2018, In : Journal of Animal Breeding and Genetics. 135, 4, p. 311-322

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
genetic merit
cattle breeds
germplasm
case studies
genetic variation
2017
3 Citations (Scopus)
Open Access
breeds
cattle
cattle breeds
Gene Pool
Pedigree
7 Citations (Scopus)

Genomics of a revived breed: Case study of the Belgian campine cattle

François, L., Wijnrocx, K., Coline, F. G., Gengler, N., Hulsegge, I., Windig, J. J., Buys, N. & Janssens, S., 2017, In : PLoS ONE. 12, 4, e0175916.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Beef
Genomics
Farms
Animals
Genes
2 Citations (Scopus)

Study of potential health effects of electromagnetic fields of telephony and Wi-Fi, using chicken embryo development as animal model

Woelders, H., de Wit, A. A. C., Lourens, A., Stockhofe, N., Engel, B., Hulsegge, B., Schokker, D., van Heijningen, P., Vossen, S., Bekers, D. & Zwamborn, P., 2017, In : Bioelectromagnetics. 38, 3, p. 186-203

Research output: Contribution to journalArticleAcademicpeer-review

Electromagnetic Fields
Eggs
Embryonic Development
Chickens
Animal Models
2015
28 Citations (Scopus)

Genomic prediction for dry matter intake of dairy cattle from an international data set consisting of research herds in Europe, North America and Australasia

de Haas, Y., Pryce, J. E., Calus, M. P. L., Wall, E., Berry, D. P., Lovendahl, P., Krattenmacher, N., Miglior, F., Weigel, K., Spurlock, D., MacDonald, K. A., Hulsegge, B. & Veerkamp, R. F., 2015, In : Journal of Dairy Science. 98, 9, p. 6522-6534

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Australasia
Australasian region
North America
dry matter intake
dairy cattle
2014
61 Citations (Scopus)

Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle

van Binsbergen, R., Bink, M. C. A. M., Calus, M. P. L., van Eeuwijk, F. A., Hayes, B. J., Hulsegge, B. & Veerkamp, R. F., 2014, In : Genetics, Selection, Evolution. 46, 25 p., 41.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Single Nucleotide Polymorphism
cattle
Holstein
genome
Genome

DNA-onderzoek beantwoordt veel vragen over het Roodbont Fries Vee

Oldenbroek, J. K., Calus, M. P. L., Windig, J. J. & Hulsegge, B., 2014, In : Zeldzaam huisdier. 39, 3, p. 12-15

Research output: Contribution to journalArticleProfessional

Open Access
358 Citations (Scopus)

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

Daetwyler, H. D., Capitan, A., Pausch, H., Stothard, P., van Binsbergen, R., Brondum, R. F., Liao, X., Djari, A., Rodriguez, S. C., Grohs, C., Esquerré, D., Bouchez, O., Rossignol, M. N., Klopp, C., Rocha, D., Fritz, S., Eggen, A., Bowman, P. J., Coote, D., Chamberlain, A. J. & 10 others, Anderson, C. L., Tassel, C. P., Hulsegge, B., Goddard, M. E., Guldbrandsten, B., Lund, M. S., Veerkamp, R. F., Boichard, D. A., Fries, R. & Hayes, B. J., 2014, In : Nature Genetics. 46, p. 858-865

Research output: Contribution to journalArticleAcademicpeer-review

Genome
Animal Welfare
Mutation
Genome-Wide Association Study
Milk
2013
4 Citations (Scopus)

Functional analysis of inter-individual transcriptome differential expression in pig longissimus muscle

Zhao, S., Hulsegge, B., Harders, F. L., Bossers, R., Keuning, E., Hoekman, A. J. W., Hoving-Bolink, A. H. & te Pas, M. F. W., 2013, In : Journal of Animal Breeding and Genetics. 130, 1, p. 72-78

Research output: Contribution to journalArticleAcademicpeer-review

Transcriptome
transcriptome
longissimus muscle
Swine
Muscles
5 Citations (Scopus)

Prioritization of candidate genes for cattle reproductive traits, based on protein-protein interactions, gene expression, and text-mining

Hulsegge, B., Woelders, H., Smits, M. A., Schokker, D., Jiang, L. & Sorensen, P., 2013, In : Physiological genomics. 45, 10, p. 400-406

Research output: Contribution to journalArticleAcademicpeer-review

Data Mining
Hypothalamus
Gene Expression
Amygdala
Genes
13 Citations (Scopus)

Selection of SNP from 50K and 777K arrays to predict breed of origin in cattle

Hulsegge, B., Calus, M. P. L., Windig, J. J., Hoving, A. H., Maurice - Van Eijndhoven, M. H. T. & Hiemstra, S. J., 2013, In : Journal of Animal Science. 91, 11, p. 5128-5134

Research output: Contribution to journalArticleAcademicpeer-review

selection methods
Single Nucleotide Polymorphism
breeds
cattle
cattle breeds

Toggenburger in de genenbank. NOG nieuws (interview)

Schenk, M., Sulkers, H., Hulsegge, B. & Hoving-Bolink, A. H., 2013, In : Geitenhouderij. 17, 6, p. 34-35

Research output: Contribution to journalArticleProfessional

Open Access
2012
3 Citations (Scopus)

Contributions to an animal trait ontology

Hulsegge, B., Smits, M. A., te Pas, M. F. W. & Woelders, H., 2012, In : Journal of Animal Science. 90, 6, p. 2061-2066

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Host-Pathogen Interactions
host-pathogen relationships
reproductive traits
terminology
Livestock
9 Citations (Scopus)

Meta-analysis of Chicken - Salmonella infection experiments

te Pas, M. F. W., Hulsegge, B., Schokker, D. J., Smits, M. A., Fife, M., Zoorob, R., Endale, M. L. & Rebel, J. M. J., 2012, In : BMC Genomics. 13, 28 p., 146.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Salmonella Infections
Meta-Analysis
Chickens
Salmonella
Genes
2010
22 Citations (Scopus)

Longissimus muscle transcriptome profiles related to carcass and meat quality traits in fresh meat Pietrain carcasses

te Pas, M. F. W., Keuning, E., Hulsegge, B., Hoving-Bolink, A. H., Evans, G. & Mulder, H. A., 2010, In : Journal of Animal Science. 88, 12, p. 4044-4055

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Pietrain
carcass quality
Transcriptome
transcriptome
longissimus muscle
2009

Methods for interpreting lists of affected genes obstained in a DNA microarray experiment

Hedegaard, J., Arce, A. M. G., Bicciato, S., Bonnet, A., Buitenhuis, B., Collado, M. C., Conley, L. N., San Cristobal, M., Ferrari, F., Garrido, J. J., Groenen, M. A. M., Hornshoj, H., Hulsegge, B., Jiang, L., Jimenez-Marin, A., Kommadath, A., Lagarrigue, S., Leunissen, J. A. M., Liaubet, L., Neerincx, P. & 11 others, Nie, H., van der Poel, W. H. M., Prickett, D., Ramirez-Boo, M., Rebel, J. M. J., Robert-Granie, C., Skarman, A., Smits, M. A., Sorensen, P., Tosser-klopp, G. & Watson, M., 2009, In : BMC Proceedings. 3, Suppl.4, p. S5 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microarrays
Oligonucleotide Array Sequence Analysis
Genes
DNA
Eimeria
2008

A Pathway Analysis Tool for Analyzing Microarray Data of Species with Low Physiological Information

te Pas, M. F. W., van Hemert, S., Hulsegge, B., Hoekman, A. J. W., Pool, M. H., Rebel, J. M. J. & Smits, M. A., 2008, In : Advances in Bioinformatics. 2008, p. 719468 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microarrays
Genes
Databases
Gene Ontology
Names
2007
3 Citations (Scopus)

Analysis of a simulated microarray dataset: Comparison of methods for data normalisation and detection of differntial expression

Watson, M., Perez-Alegre, M., Denis Baron, M., Delmas, C., Dovc, P., Duval, M., Foulley, J. L., Garrido-Pavon, J. J., Hulsegge, B., Jafrezic, F., Jiménez-Marín, A., Lavric, M., Lê Cao, K. A., Marot, G., Mouzaki, D., Pool, M. H., Robert-Granié, C., San Cristobal, M., Tosser-Klop, G., Waddington, D. & 1 others, de Koning, D. J., 2007, In : Genetics, Selection, Evolution. 39, 6, p. 669-683

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
gene
selection criteria
methodology
data quality
statistical analysis
11 Citations (Scopus)

Analysis of the real EADGENE data set: Comparison of methods and guidelines for data normalisation and selection of differentially expressed genes

Jafrezic, F., de Koning, D. J., Boettcher, P., Bonnet, A., Buitenhuis, B., Closset, R., Dejean, S., Delmas, C., Detilleux, J. C., Dovc, P., Duval, M., Foulley, J. L., Hedegaard, J., Hoprnshoj, H., Hulsegge, B., Janss, L., Jensen, K., Jiang, L., Lavric, M., Cao Le, K. A. & 18 others, Lund, M. S., Malinverni, R., Marot, G., Nie, H., Petzl, W., Pool, M. H., Robert-Granie, C., Cristobal, M., van Schothorst, E. M., Schuberth, H. J., Sorensen, P., Stella, A., Tosser-klopp, G., Waddington, D., Watson, M., Yang, M., Zerbe, H. & Seyfert, H. M., 2007, In : Genetics, Selection, Evolution. 39, p. 633-650

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Animal Diseases
animal diseases
Genomics
genomics
Guidelines

Analysis of the real EADGENE data set: Multivariate approaches and post analyis

Sorensen, P., Bonnet, A., Buitenhuis, B., Closset, R., Dejean, S., Delmas, C., Duval, M., Glass, L., Hedegaard, J., Hornshoj, H., Hulsegge, B., Jaffrezic, F., Jensen, K., Jiang, L., de Koning, D. J., Lê Cao, K. A., Nie, H., Petzl, W., Pool, M. H., Robert-Granie, C. & 10 others, San Cristobal, M., Lund, M. S., van Schothorst, E. M., Schuberth, H. J., Seyfert, H. M., Tosser-klopp, G., Waddington, D., Watson, D., Yang, W. & Zerbe, H., 2007, In : Genetics, Selection, Evolution. 39, 6, p. 651-668

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
gene
Genes
Principal Component Analysis
genes
Cluster Analysis
46 Citations (Scopus)

Biochemical pathways analysis of microarray results: regulation of myogenesis in pigs

te Pas, M. F. W., Hulsegge, B., Coster, A., Pool, M. H., Heuven, H. C. M. & Janss, L. L. G., 2007, In : BMC Developmental Biology. 7, 15 p., 66.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Muscle Development
Microarray Analysis
Swine
Databases
Myoblasts
5 Citations (Scopus)

Pathways analysis: combining microarray data and physiological data to study myogenesis

te Pas, M. F. W., Hulsegge, B. & Pool, M. H., 2007, In : Archiv fuer Tierzucht. 50, Special, p. 27-31

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Muscle Development
muscle development
Microarray Analysis
Databases
Biological Phenomena
2006

Analysis of the differential transcriptome expression profiles during prenatal muscle tissue development in pigs (workshop contribution)

te Pas, M. F. W., Pool, M. H., Hulsegge, B. & Janss, L. L. G., 2006, In : Archiv fuer Tierzucht. 49, p. 110-115

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Muscle Development
Duroc
Transcriptome
muscle tissues
transcriptome
2004
44 Citations (Scopus)

Decision support system with semantic model to assess the risk of tail biting in pigs. 1. Modelling

Bracke, M. B. M., Hulsegge, B., Blokhuis, H. J. & Keeling, L., 2004, In : Applied Animal Behaviour Science. 87, p. 31-44

Research output: Contribution to journalArticleAcademicpeer-review

decision support systems
Semantics
Tail
tail
Swine
20 Citations (Scopus)

Decision support system with semantic model to assess the risk of tail biting in pigs. 2. 'Validation'

Bracke, M. B. M., Keeling, L., Blokhuis, H. J. & Hulsegge, B., 2004, In : Applied Animal Behaviour Science. 87, 1-2, p. 45-54

Research output: Contribution to journalArticleAcademicpeer-review

decision support systems
Semantics
Tail
tail
Swine
23 Citations (Scopus)

Effects of housing conditions of slaughter pigs on some post mortem muscle metabolites and pork quality characteristics

Lambooij, E., Hulsegge, B., Klont, R. E., Winkelman-Goedhart, H. A., Reimert, H. G. M. & Kranen, R. W., 2004, In : Meat Science. 66, p. 855-862

Research output: Contribution to journalArticleAcademicpeer-review

meat quality
slaughter
Swine
Meat
metabolites
2003
84 Citations (Scopus)

Lying characteristics as determinants for space requirements in pigs

Ekkel, E. D., Spoolder, H. A. M., Hulsegge, B. & Hopster, H., 2003, In : Applied Animal Behaviour Science. 80, p. 19-30

Research output: Contribution to journalArticleAcademicpeer-review

Swine
swine
posture
Posture
Weights and Measures