20032019

Research output per year

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Research Output

Abstract

Boosted regression trees to predict pneumonia, growth and meat percentage of slaughter pigs

Mollenhorst, H., de Greef, K. H., Ducro, B. J., Hulsegge, B., Hoving, A. H., Veerkamp, R. F. & Kamphuis, C., 27 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 437-437 (Book of abstracts; no. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Delineating spatio-temporal processes in the gut mucosa of pigs

Hulsegge, B., Rebel, J. M. J., Schokker, D. & Smits, M. A., 2016, Book of Abstracts of the 67th Annual Meeting of the European Federation of Animal Science: EAAP – 67th Annual Meeting, Belfast 201. Wageningen: Wageningen Academic Publishers, p. 542-542 (Book of abstracts; no. 22).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Diverse ways to visualize microarray data on physiological pathways increases insight

te Pas, M. F. W. & Hulsegge, B., 2009, 18th Annual Growth Factor and Signal Transduction Symposium, Ames Iowa USA 11-6-2009 tm 14-06-2009. p. 27-27

Research output: Chapter in Book/Report/Conference proceedingAbstract

Genetic analysis to support the re-establishment of the Kempen breed

Francois, L., Janssens, S., Colinet, F. G., Gengler, N., Hulsegge, B., Windig, J. J. & Buys, N., 2015, Book of Abstracts 66th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, Vol. 21. p. 99-99

Research output: Chapter in Book/Report/Conference proceedingAbstract

Global Perspectives on animal trait ontology

Reecy, J. M., Park, C. A., Hu, Z. L., Hulsegge, B., van der Steen, H. A. M. & Hocquette, J. F., 2009, Book of abstracts of the 60th Annual Meeting of the European Association for Animal Production, Barcelona Spain, 24-27 August 2009. Wageningen: Wageningen Academic Publishers, p. 319-319

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Impact of merging different commercial lines on genetic diversity of the Dutch Landrace pigs

Hulsegge, B., Calus, M. P. L., Hoving-Bolink, A. H., Lopes, M. S., Megens, H. J. W. C. & Oldenbroek, J. K., 27 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 554-554 (Book of abstracts; no. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Improving genomic prediction in numerically small Red dairy cattle populations

Marjanovic, J., Hulsegge, B., Schurink, A. & Calus, M. P. L., 27 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 121-121 (Book of abstracts; no. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Integrating genomic data in National Genebanks for targeted re-use of collections

Groeneveld, E., Hulsegge, B. & Hiemstra, S. J., 2015, Book of Abstracts of the 66th Annual Meeting of the European Association for Animal Production. Wageningen: Wageningen Academic Publishers, Vol. 21. p. 104-104

Research output: Chapter in Book/Report/Conference proceedingAbstract

Pathways analysis of microarray data

te Pas, M. F. W., Hulsegge, B., Pool, M. H., Rebel, J. M. J. & van Hemert, S., 2006.

Research output: Contribution to conferenceAbstractAcademic

Recent innovations and tools of molecular genetics applied to animal breeding for the improvement of animal productions

te Pas, M. F. W., Smits, M. A., Veerkamp, R. F., Calus, M. P. L., Hulsegge, B., Hiemstra, S. J., Boer, M. & Windig, J. J., 2013, Proceedings of the 20th Congress of Animal Science and Production Association, 11-13 June 2013, Bologna, Italy. Vol. 12. p. C-001-C-001

Research output: Chapter in Book/Report/Conference proceedingAbstract

Supporting genetic management of live populations with gene bank material in a cattle populations

Windig, J. J., Hiemstra, S. J., Hulsegge, B., Francois, L. & Buys, N., 2015, Book of Abstracts of the 66th Annual Meeting of the EAAP. Wageningen: Wageningen Academic Publishers, Vol. 21. p. 100-100

Research output: Chapter in Book/Report/Conference proceedingAbstract

The ASGBioinformatics microarray analysis pipeline

Hulsegge, B., te Pas, M. F. W. & Pool, M. H., 2007, 4 th international symposium on networks on bioinformatics/ NBIC/ ISNB, 16-19 April 2007. Amsterdam, p. 65-65

Research output: Chapter in Book/Report/Conference proceedingAbstract

Towards an antology for farm animal reproduction traits

Hulsegge, B., Smits, M. A., te Pas, M. F. W. & Woelders, H., 2010, Proceedings of the 9th European Conference on Computational Biology (ECCB2010), Ghent, Belgium, 26-29 September 2010. p. 85-86

Research output: Chapter in Book/Report/Conference proceedingAbstract

Towards physiological understanding of microarray results

Hulsegge, B., van Hemert, S., Rebel, J. M. J., Smits, M. A., Hoekman, A. J. W. & te Pas, M. F. W., 2007.

Research output: Contribution to conferenceAbstractAcademic

Visualization microarray data on pathways increases understanding of results

te Pas, M. F. W. & Hulsegge, B., 2010.

Research output: Contribution to conferenceAbstractAcademic

Article

Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle

van Binsbergen, R., Bink, M. C. A. M., Calus, M. P. L., van Eeuwijk, F. A., Hayes, B. J., Hulsegge, B. & Veerkamp, R. F., 2014, In : Genetics, Selection, Evolution. 46, 25 p., 41.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
63 Citations (Scopus)

Analysis of a simulated microarray dataset: Comparison of methods for data normalisation and detection of differntial expression

Watson, M., Perez-Alegre, M., Denis Baron, M., Delmas, C., Dovc, P., Duval, M., Foulley, J. L., Garrido-Pavon, J. J., Hulsegge, B., Jafrezic, F., Jiménez-Marín, A., Lavric, M., Lê Cao, K. A., Marot, G., Mouzaki, D., Pool, M. H., Robert-Granié, C., San Cristobal, M., Tosser-Klop, G., Waddington, D. & 1 others, de Koning, D. J., 2007, In : Genetics, Selection, Evolution. 39, 6, p. 669-683

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Analysis of the differential transcriptome expression profiles during prenatal muscle tissue development in pigs (workshop contribution)

te Pas, M. F. W., Pool, M. H., Hulsegge, B. & Janss, L. L. G., 2006, In : Archiv fuer Tierzucht. 49, p. 110-115

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Analysis of the real EADGENE data set: Comparison of methods and guidelines for data normalisation and selection of differentially expressed genes

Jafrezic, F., de Koning, D. J., Boettcher, P., Bonnet, A., Buitenhuis, B., Closset, R., Dejean, S., Delmas, C., Detilleux, J. C., Dovc, P., Duval, M., Foulley, J. L., Hedegaard, J., Hoprnshoj, H., Hulsegge, B., Janss, L., Jensen, K., Jiang, L., Lavric, M., Cao Le, K. A. & 18 others, Lund, M. S., Malinverni, R., Marot, G., Nie, H., Petzl, W., Pool, M. H., Robert-Granie, C., Cristobal, M., van Schothorst, E. M., Schuberth, H. J., Sorensen, P., Stella, A., Tosser-klopp, G., Waddington, D., Watson, M., Yang, M., Zerbe, H. & Seyfert, H. M., 2007, In : Genetics, Selection, Evolution. 39, p. 633-650

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)

Analysis of the real EADGENE data set: Multivariate approaches and post analyis

Sorensen, P., Bonnet, A., Buitenhuis, B., Closset, R., Dejean, S., Delmas, C., Duval, M., Glass, L., Hedegaard, J., Hornshoj, H., Hulsegge, B., Jaffrezic, F., Jensen, K., Jiang, L., de Koning, D. J., Lê Cao, K. A., Nie, H., Petzl, W., Pool, M. H., Robert-Granie, C. & 10 others, San Cristobal, M., Lund, M. S., van Schothorst, E. M., Schuberth, H. J., Seyfert, H. M., Tosser-klopp, G., Waddington, D., Watson, D., Yang, W. & Zerbe, H., 2007, In : Genetics, Selection, Evolution. 39, 6, p. 651-668

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A Pathway Analysis Tool for Analyzing Microarray Data of Species with Low Physiological Information

te Pas, M. F. W., van Hemert, S., Hulsegge, B., Hoekman, A. J. W., Pool, M. H., Rebel, J. M. J. & Smits, M. A., 2008, In : Advances in Bioinformatics. 2008, p. 719468 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Assessment of sire contribution and breed-of-origin of alleles in a three-way crossbred broiler dataset

Calus, M. P. L., Vandenplas, J., Hulsegge, I., Borg, R., Henshall, J. M. & Hawken, R., 1 Dec 2019, In : Poultry Science. 98, 12, p. 6270-6280 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A time-series approach for clustering farms based on slaughterhouse health aberration data

Hulsegge, I. & de Greef, K. H., 1 May 2018, In : Preventive Veterinary Medicine. 153, p. 64-70

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Biochemical pathways analysis of microarray results: regulation of myogenesis in pigs

te Pas, M. F. W., Hulsegge, B., Coster, A., Pool, M. H., Heuven, H. C. M. & Janss, L. L. G., 2007, In : BMC Developmental Biology. 7, 15 p., 66.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
46 Citations (Scopus)

Boosted trees to predict pneumonia, growth, and meat percentage of growing-finishing pigs

Mollenhorst, H., Ducro, B. J., de Greef, K. H., Hulsegge, I. & Kamphuis, C., 3 Oct 2019, In : Journal of Animal Science. 97, 10, p. 4152-4159

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)
Open Access
3 Citations (Scopus)

Contributions to an animal trait ontology

Hulsegge, B., Smits, M. A., te Pas, M. F. W. & Woelders, H., 2012, In : Journal of Animal Science. 90, 6, p. 2061-2066

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Decision support system with semantic model to assess the risk of tail biting in pigs. 1. Modelling

Bracke, M. B. M., Hulsegge, B., Blokhuis, H. J. & Keeling, L., 2004, In : Applied Animal Behaviour Science. 87, p. 31-44

Research output: Contribution to journalArticleAcademicpeer-review

44 Citations (Scopus)

Decision support system with semantic model to assess the risk of tail biting in pigs. 2. 'Validation'

Bracke, M. B. M., Keeling, L., Blokhuis, H. J. & Hulsegge, B., 2004, In : Applied Animal Behaviour Science. 87, 1-2, p. 45-54

Research output: Contribution to journalArticleAcademicpeer-review

20 Citations (Scopus)

Development of a genetic tool for determining breed purity of cattle

Hulsegge, I., Schoon, M., Windig, J., Neuteboom, M., Hiemstra, S. J. & Schurink, A., 1 May 2019, In : Livestock Science. 223, p. 60-67 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

DNA-onderzoek beantwoordt veel vragen over het Roodbont Fries Vee

Oldenbroek, J. K., Calus, M. P. L., Windig, J. J. & Hulsegge, B., 2014, In : Zeldzaam huisdier. 39, 3, p. 12-15

Research output: Contribution to journalArticleProfessional

Open Access

Effects of housing conditions of slaughter pigs on some post mortem muscle metabolites and pork quality characteristics

Lambooij, E., Hulsegge, B., Klont, R. E., Winkelman-Goedhart, H. A., Reimert, H. G. M. & Kranen, R. W., 2004, In : Meat Science. 66, p. 855-862

Research output: Contribution to journalArticleAcademicpeer-review

23 Citations (Scopus)

Functional analysis of inter-individual transcriptome differential expression in pig longissimus muscle

Zhao, S., Hulsegge, B., Harders, F. L., Bossers, R., Keuning, E., Hoekman, A. J. W., Hoving-Bolink, A. H. & te Pas, M. F. W., 2013, In : Journal of Animal Breeding and Genetics. 130, 1, p. 72-78

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Genomic prediction for dry matter intake of dairy cattle from an international data set consisting of research herds in Europe, North America and Australasia

de Haas, Y., Pryce, J. E., Calus, M. P. L., Wall, E., Berry, D. P., Lovendahl, P., Krattenmacher, N., Miglior, F., Weigel, K., Spurlock, D., MacDonald, K. A., Hulsegge, B. & Veerkamp, R. F., 2015, In : Journal of Dairy Science. 98, 9, p. 6522-6534

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
29 Citations (Scopus)

Genomics of a revived breed: Case study of the Belgian campine cattle

François, L., Wijnrocx, K., Coline, F. G., Gengler, N., Hulsegge, I., Windig, J. J., Buys, N. & Janssens, S., 2017, In : PLoS ONE. 12, 4, e0175916.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

Impact of merging commercial breeding lines on the genetic diversity of Landrace pigs

Hulsegge, I., Calus, M., Hoving-Bolink, R., Lopes, M., Megens, H. J. & Oldenbroek, K., 29 Oct 2019, In : Genetics Selection Evolution. 51, 1, 60.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Longissimus muscle transcriptome profiles related to carcass and meat quality traits in fresh meat Pietrain carcasses

te Pas, M. F. W., Keuning, E., Hulsegge, B., Hoving-Bolink, A. H., Evans, G. & Mulder, H. A., 2010, In : Journal of Animal Science. 88, 12, p. 4044-4055

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
22 Citations (Scopus)

Lying characteristics as determinants for space requirements in pigs

Ekkel, E. D., Spoolder, H. A. M., Hulsegge, B. & Hopster, H., 2003, In : Applied Animal Behaviour Science. 80, p. 19-30

Research output: Contribution to journalArticleAcademicpeer-review

84 Citations (Scopus)

Meta-analysis of Chicken - Salmonella infection experiments

te Pas, M. F. W., Hulsegge, B., Schokker, D. J., Smits, M. A., Fife, M., Zoorob, R., Endale, M. L. & Rebel, J. M. J., 2012, In : BMC Genomics. 13, 28 p., 146.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Met DNA-onderzoek aantonen tot welk ras een rund behoort

Schoon, M., Hulsegge, B., Schurink, A. & Hiemstra, S. J., 15 Aug 2018, In : Zeldzaam huisdier. 43, 3, p. 10-11

Research output: Contribution to journalArticlePopular

Open Access

Methods for interpreting lists of affected genes obstained in a DNA microarray experiment

Hedegaard, J., Arce, A. M. G., Bicciato, S., Bonnet, A., Buitenhuis, B., Collado, M. C., Conley, L. N., San Cristobal, M., Ferrari, F., Garrido, J. J., Groenen, M. A. M., Hornshoj, H., Hulsegge, B., Jiang, L., Jimenez-Marin, A., Kommadath, A., Lagarrigue, S., Leunissen, J. A. M., Liaubet, L., Neerincx, P. & 11 others, Nie, H., van der Poel, W. H. M., Prickett, D., Ramirez-Boo, M., Rebel, J. M. J., Robert-Granie, C., Skarman, A., Smits, M. A., Sorensen, P., Tosser-klopp, G. & Watson, M., 2009, In : BMC Proceedings. 3, Suppl.4, p. S5 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Pathways analysis: combining microarray data and physiological data to study myogenesis

te Pas, M. F. W., Hulsegge, B. & Pool, M. H., 2007, In : Archiv fuer Tierzucht. 50, Special, p. 27-31

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Plasticity of intestinal gene expression profile signatures reflected by nutritional interventions in piglets

Schokker, D., Hulsegge, I., Woelders, H. & Rebel, J. M. J., 23 May 2019, In : BMC Genomics. 20, 1, 414.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Prioritization of candidate genes for cattle reproductive traits, based on protein-protein interactions, gene expression, and text-mining

Hulsegge, B., Woelders, H., Smits, M. A., Schokker, D., Jiang, L. & Sorensen, P., 2013, In : Physiological genomics. 45, 10, p. 400-406

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)

Selection of SNP from 50K and 777K arrays to predict breed of origin in cattle

Hulsegge, B., Calus, M. P. L., Windig, J. J., Hoving, A. H., Maurice - Van Eijndhoven, M. H. T. & Hiemstra, S. J., 2013, In : Journal of Animal Science. 91, 11, p. 5128-5134

Research output: Contribution to journalArticleAcademicpeer-review

13 Citations (Scopus)

Study of potential health effects of electromagnetic fields of telephony and Wi-Fi, using chicken embryo development as animal model

Woelders, H., de Wit, A. A. C., Lourens, A., Stockhofe, N., Engel, B., Hulsegge, B., Schokker, D., van Heijningen, P., Vossen, S., Bekers, D. & Zwamborn, P., 2017, In : Bioelectromagnetics. 38, 3, p. 186-203

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

The impact of using old germplasm on genetic merit and diversity - A cattle breed case study

Eynard, S. E., Windig, J. J., Hulsegge, I., Hiemstra, S. J. & Calus, M. P. L., Aug 2018, In : Journal of Animal Breeding and Genetics. 135, 4, p. 311-322

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Toggenburger in de genenbank. NOG nieuws (interview)

Schenk, M., Sulkers, H., Hulsegge, B. & Hoving-Bolink, A. H., 2013, In : Geitenhouderij. 17, 6, p. 34-35

Research output: Contribution to journalArticleProfessional

Open Access

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

Daetwyler, H. D., Capitan, A., Pausch, H., Stothard, P., van Binsbergen, R., Brondum, R. F., Liao, X., Djari, A., Rodriguez, S. C., Grohs, C., Esquerré, D., Bouchez, O., Rossignol, M. N., Klopp, C., Rocha, D., Fritz, S., Eggen, A., Bowman, P. J., Coote, D., Chamberlain, A. J. & 10 others, Anderson, C. L., Tassel, C. P., Hulsegge, B., Goddard, M. E., Guldbrandsten, B., Lund, M. S., Veerkamp, R. F., Boichard, D. A., Fries, R. & Hayes, B. J., 2014, In : Nature Genetics. 46, p. 858-865

Research output: Contribution to journalArticleAcademicpeer-review

361 Citations (Scopus)