20032019

Research output per year

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Research Output

2003

Lying characteristics as determinants for space requirements in pigs

Ekkel, E. D., Spoolder, H. A. M., Hulsegge, B. & Hopster, H., 2003, In : Applied Animal Behaviour Science. 80, p. 19-30

Research output: Contribution to journalArticleAcademicpeer-review

84 Citations (Scopus)
2004

Decision support system with semantic model to assess the risk of tail biting in pigs. 1. Modelling

Bracke, M. B. M., Hulsegge, B., Blokhuis, H. J. & Keeling, L., 2004, In : Applied Animal Behaviour Science. 87, p. 31-44

Research output: Contribution to journalArticleAcademicpeer-review

44 Citations (Scopus)

Decision support system with semantic model to assess the risk of tail biting in pigs. 2. 'Validation'

Bracke, M. B. M., Keeling, L., Blokhuis, H. J. & Hulsegge, B., 2004, In : Applied Animal Behaviour Science. 87, 1-2, p. 45-54

Research output: Contribution to journalArticleAcademicpeer-review

20 Citations (Scopus)

Effects of housing conditions of slaughter pigs on some post mortem muscle metabolites and pork quality characteristics

Lambooij, E., Hulsegge, B., Klont, R. E., Winkelman-Goedhart, H. A., Reimert, H. G. M. & Kranen, R. W., 2004, In : Meat Science. 66, p. 855-862

Research output: Contribution to journalArticleAcademicpeer-review

23 Citations (Scopus)
2005

Background bias on cDNA micro-arrays

Pool, M. H., Hulsegge, B. & Janss, L. L. G., 2005.

Research output: Contribution to conferenceConference paperAcademic

2006

Analysis of the differential transcriptome expression profiles during prenatal muscle tissue development in pigs (workshop contribution)

te Pas, M. F. W., Pool, M. H., Hulsegge, B. & Janss, L. L. G., 2006, In : Archiv fuer Tierzucht. 49, p. 110-115

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Pathway analysis of intestinal microarray data for two chicken lines differing in response to salmonella enteritidis infection

te Pas, M. F. W., van Hemert, S., Hulsegge, B., Rebel, J. M. J. & Smits, M. A., 2006.

Research output: Contribution to conferenceConference paperAcademic

Open Access

Pathway analysis of Microarray data

te Pas, M. F. W., Hulsegge, B., Pool, M. H., Rebel, J. M. J. & van Hemert, S., 2006.

Research output: Contribution to conferenceConference paperAcademic

Pathways analysis of microarray data

te Pas, M. F. W., Hulsegge, B., Pool, M. H., Rebel, J. M. J. & van Hemert, S., 2006.

Research output: Contribution to conferenceAbstractAcademic

Pathways analysis of Microarray data

te Pas, M. F. W., Hulsegge, B., Pool, M. H., Rebel, J. M. J. & van Hemert, S., 2006.

Research output: Contribution to conferenceConference paperAcademic

Pathways analysis of microarrays

te Pas, M. F. W., Hulsegge, B. & Smits, M. A., 2006.

Research output: Contribution to conferenceConference paperAcademic

2007

Analysis of a simulated microarray dataset: Comparison of methods for data normalisation and detection of differntial expression

Watson, M., Perez-Alegre, M., Denis Baron, M., Delmas, C., Dovc, P., Duval, M., Foulley, J. L., Garrido-Pavon, J. J., Hulsegge, B., Jafrezic, F., Jiménez-Marín, A., Lavric, M., Lê Cao, K. A., Marot, G., Mouzaki, D., Pool, M. H., Robert-Granié, C., San Cristobal, M., Tosser-Klop, G., Waddington, D. & 1 others, de Koning, D. J., 2007, In : Genetics, Selection, Evolution. 39, 6, p. 669-683

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Analysis of the real EADGENE data set: Comparison of methods and guidelines for data normalisation and selection of differentially expressed genes

Jafrezic, F., de Koning, D. J., Boettcher, P., Bonnet, A., Buitenhuis, B., Closset, R., Dejean, S., Delmas, C., Detilleux, J. C., Dovc, P., Duval, M., Foulley, J. L., Hedegaard, J., Hoprnshoj, H., Hulsegge, B., Janss, L., Jensen, K., Jiang, L., Lavric, M., Cao Le, K. A. & 18 others, Lund, M. S., Malinverni, R., Marot, G., Nie, H., Petzl, W., Pool, M. H., Robert-Granie, C., Cristobal, M., van Schothorst, E. M., Schuberth, H. J., Sorensen, P., Stella, A., Tosser-klopp, G., Waddington, D., Watson, M., Yang, M., Zerbe, H. & Seyfert, H. M., 2007, In : Genetics, Selection, Evolution. 39, p. 633-650

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)

Analysis of the real EADGENE data set: Multivariate approaches and post analyis

Sorensen, P., Bonnet, A., Buitenhuis, B., Closset, R., Dejean, S., Delmas, C., Duval, M., Glass, L., Hedegaard, J., Hornshoj, H., Hulsegge, B., Jaffrezic, F., Jensen, K., Jiang, L., de Koning, D. J., Lê Cao, K. A., Nie, H., Petzl, W., Pool, M. H., Robert-Granie, C. & 10 others, San Cristobal, M., Lund, M. S., van Schothorst, E. M., Schuberth, H. J., Seyfert, H. M., Tosser-klopp, G., Waddington, D., Watson, D., Yang, W. & Zerbe, H., 2007, In : Genetics, Selection, Evolution. 39, 6, p. 651-668

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Biochemical pathways analysis of microarray results: regulation of myogenesis in pigs

te Pas, M. F. W., Hulsegge, B., Coster, A., Pool, M. H., Heuven, H. C. M. & Janss, L. L. G., 2007, In : BMC Developmental Biology. 7, 15 p., 66.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
46 Citations (Scopus)

Determining Networks of pathways from microarray data: chicken intestine reaction to Salmonella enteritidis infection as an example

te Pas, M. F. W., van Hemert, S., Hulsegge, B., Pool, M. H. & Rebel, J. M. J., 2007.

Research output: Contribution to conferenceConference paperAcademic

Pathway analysis: Combining microarray data and physiological data to study myogenesis

te Pas, M. F. W., Hulsegge, B. & Pool, M. H., 2007, COST Action 925: "The importance of prenatal events for postnatal mucle growth in relation to the quality of muscle based foods", 3rd Work Group meeting , Antalya, Turkey, in collaboration with the Physiology Commission of the EAAP, 21st - 22nd September 2006. Berlin: Akademie Verlag, p. 27-31

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access

Pathways analysis: combining microarray data and physiological data to study myogenesis

te Pas, M. F. W., Hulsegge, B. & Pool, M. H., 2007, In : Archiv fuer Tierzucht. 50, Special, p. 27-31

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

The ASGBioinformatics microarray analysis pipeline

Hulsegge, B., te Pas, M. F. W. & Pool, M. H., 2007, 4 th international symposium on networks on bioinformatics/ NBIC/ ISNB, 16-19 April 2007. Amsterdam, p. 65-65

Research output: Chapter in Book/Report/Conference proceedingAbstract

The EADGENE Microarray Data Analysis Workshop

de Koning, D. J., Jaffrezic, F., Lund, M. S., Watson, M., Channing, C., Hulsegge, B., Pool, M. H., Buitenhuis, B., Hedegaard, J., Hornshoj, H., Sorensen, P., Marot, G., Delmas, C., Lê Cao, K. A., San Cristobal, M., Baron, M. D., Malinverni, R., Stella, A., Brunner, R. M., Seyfert, H. M. & 12 others, Jensen, K., Mouzaki, D., Waddington, D., Jiménez-Marín, A., Perez-Alegre, M., Perez-Reinado, E., Closset, R., Detilleux, J. C., Dovc, P., Lavric, M., Nie, H. & Janss, L., 2007, In : Genetics, Selection, Evolution. 39, 6, p. 621-631

Research output: Contribution to journalEditorialAcademicpeer-review

Open Access
2 Citations (Scopus)

Towards physiological understanding of microarray results

Hulsegge, B., van Hemert, S., Rebel, J. M. J., Smits, M. A., Hoekman, A. J. W. & te Pas, M. F. W., 2007.

Research output: Contribution to conferenceAbstractAcademic

2008

A Pathway Analysis Tool for Analyzing Microarray Data of Species with Low Physiological Information

te Pas, M. F. W., van Hemert, S., Hulsegge, B., Hoekman, A. J. W., Pool, M. H., Rebel, J. M. J. & Smits, M. A., 2008, In : Advances in Bioinformatics. 2008, p. 719468 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2009

Cryoconservation of cattle breeds in the Netherlands

Woelders, H., Hulsegge, B., Sulkers, H., Hoving, A. H. & Hiemstra, S. J., 2009, Wageningen : Wageningen UR.

Research output: Other contributionPamphlet

Open Access

Cryoconservering van runderrassen in Nederland

Woelders, H., Hulsegge, B., Sulkers, H., Hoving, A. H. & Hiemstra, S. J., 2009, Wageningen : Wageningen UR.

Research output: Other contributionPamphlet

Open Access

Diverse ways to visualize microarray data on physiological pathways increases insight

te Pas, M. F. W. & Hulsegge, B., 2009, 18th Annual Growth Factor and Signal Transduction Symposium, Ames Iowa USA 11-6-2009 tm 14-06-2009. p. 27-27

Research output: Chapter in Book/Report/Conference proceedingAbstract

Global Perspectives on animal trait ontology

Reecy, J. M., Park, C. A., Hu, Z. L., Hulsegge, B., van der Steen, H. A. M. & Hocquette, J. F., 2009, Book of abstracts of the 60th Annual Meeting of the European Association for Animal Production, Barcelona Spain, 24-27 August 2009. Wageningen: Wageningen Academic Publishers, p. 319-319

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Globaltest and GOEAST: two different approaches for Gene Ontology analysis

Hulsegge, B., Kommadath, A. & Smits, M. A., 2009, p. S10.

Research output: Contribution to conferenceConference paperAcademicpeer-review

Open Access

Methods for interpreting lists of affected genes obstained in a DNA microarray experiment

Hedegaard, J., Arce, A. M. G., Bicciato, S., Bonnet, A., Buitenhuis, B., Collado, M. C., Conley, L. N., San Cristobal, M., Ferrari, F., Garrido, J. J., Groenen, M. A. M., Hornshoj, H., Hulsegge, B., Jiang, L., Jimenez-Marin, A., Kommadath, A., Lagarrigue, S., Leunissen, J. A. M., Liaubet, L., Neerincx, P. & 11 others, Nie, H., van der Poel, W. H. M., Prickett, D., Ramirez-Boo, M., Rebel, J. M. J., Robert-Granie, C., Skarman, A., Smits, M. A., Sorensen, P., Tosser-klopp, G. & Watson, M., 2009, In : BMC Proceedings. 3, Suppl.4, p. S5 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2010

Longissimus muscle transcriptome profiles related to carcass and meat quality traits in fresh meat Pietrain carcasses

te Pas, M. F. W., Keuning, E., Hulsegge, B., Hoving-Bolink, A. H., Evans, G. & Mulder, H. A., 2010, In : Journal of Animal Science. 88, 12, p. 4044-4055

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
22 Citations (Scopus)

Ontology. An ontology for host pathogen interactions in farm animals

Hulsegge, B., 2010, Wageningen: Animal Breeding and Genetics (ABG-80436). (Major thesis; no. ABG-80436)

Research output: Book/ReportBookAcademic

Towards an antology for farm animal reproduction traits

Hulsegge, B., Smits, M. A., te Pas, M. F. W. & Woelders, H., 2010, Proceedings of the 9th European Conference on Computational Biology (ECCB2010), Ghent, Belgium, 26-29 September 2010. p. 85-86

Research output: Chapter in Book/Report/Conference proceedingAbstract

Towards Uniform Gene Bank Documentation In Europe – The Experience From The EFABISnet Project

Duchev, Z. I., Gandini, G., Berger, B., Hulsegge, B., Hiemstra, S. J., Maki-Tanila, A., Gorjanc, G., Dýrmundsson, O., Oravcova, M., Marguerat-König, C., Viinalass, H. & Groeneveld, E., 2010.

Research output: Contribution to conferenceConference paperAcademicpeer-review

Open Access

Visualization microarray data on pathways increases understanding of results

te Pas, M. F. W. & Hulsegge, B., 2010.

Research output: Contribution to conferenceAbstractAcademic

2011

From Visual Biological Models Toward Mathematical Models of the Biology of Complex Traits

te Pas, M. F. W., Hoekman, A. J. W. & Hulsegge, B., 2011, System Biology and Livestock Science. John Wiley and Sons, p. 137-160 332 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)
2012

1000 Bull Genomes Consortium Project

Hayes, B. J., Fries, R., Lund, M. S., Boichard, D. A., Stothard, P., Veerkamp, R. F., Tassell, C., Anderson, C. L., Hulsegge, B., Guldbrandtsen, B., Rocha, D., Hinirichs, D., Bagnato, A., Georges, M., Spelman, R. J., Reecy, J. M., Archibald, A. L., Goddard, M. E. & Gredler, B., 2012, Plant and Animal Genome XX Conference, San Diego, CA, USA, 14-18 January 2012. W139

Research output: Chapter in Book/Report/Conference proceedingConference paper

Conserving a single gene versus overall genetic diversity with the help of optimal contributions

Windig, J. J., Hulsegge, B. & Engelsma, K. A., 2012, Book of Abstracts of the 63rd Annual Meeting of the European Association for Animal Production. Wageningen Academic Publishers, p. 11-11

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access

Contributions to an animal trait ontology

Hulsegge, B., Smits, M. A., te Pas, M. F. W. & Woelders, H., 2012, In : Journal of Animal Science. 90, 6, p. 2061-2066

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Meta-analysis of Chicken - Salmonella infection experiments

te Pas, M. F. W., Hulsegge, B., Schokker, D. J., Smits, M. A., Fife, M., Zoorob, R., Endale, M. L. & Rebel, J. M. J., 2012, In : BMC Genomics. 13, 28 p., 146.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Toward genomic prediction from genome sequence data and the 1000 bull genomes project

Hayes, B., Anderson, C. L., Daetwyler, H. D., Fries, R., Guldbrandtsen, B., Lund, M., Boichard, D. A., Stothard, P., Veerkamp, R. F., Hulsegge, B., Rocha, D., Tassell, C., Coote, D., Goddard, M. E. & The 1000 Bull Genomes Consortium, 2012, 4th International Conference of Quantative Genetics. p. 55-55

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
2013

1000 Bull Genomes - Toward genomic Selectionf from whole genome sequence Data in Dairy and Beef Cattle

Hayes, B., Daetwyler, H. D., Fries, R., Guldbrandtsen, B., Mogens Sando Lund, M., Didier A. Boichard, D. A., Stothard, P., Veerkamp, R. F., Hulsegge, B., Rocha, D., Tassell, C., Mullaart, E., Gredler, B., Druet, T., Bagnato, A., Goddard, M. E. & Chamberlain, H. L., 2013.

Research output: Contribution to conferenceConference paperAcademic

Functional analysis of inter-individual transcriptome differential expression in pig longissimus muscle

Zhao, S., Hulsegge, B., Harders, F. L., Bossers, R., Keuning, E., Hoekman, A. J. W., Hoving-Bolink, A. H. & te Pas, M. F. W., 2013, In : Journal of Animal Breeding and Genetics. 130, 1, p. 72-78

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Genotype imputation accuracy in Holstein Friesian cattle in case of whole-genome sequence data

van Binsbergen, R., Bink, M. C. A. M., Calus, M. P. L., van Eeuwijk, F. A., Hayes, B. J., Hulsegge, B. & Veerkamp, R. F., 2013, Book of Abstracts of the 64th Annual Meeting of the European Federation of Animal Science, Nantes, France 26-30 August 2013. Wageningen Academic Publishers, Vol. 19. p. 225-225

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access

Prioritization of candidate genes for cattle reproductive traits, based on protein-protein interactions, gene expression, and text-mining

Hulsegge, B., Woelders, H., Smits, M. A., Schokker, D., Jiang, L. & Sorensen, P., 2013, In : Physiological genomics. 45, 10, p. 400-406

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)

Recent innovations and tools of molecular genetics applied to animal breeding for the improvement of animal productions

te Pas, M. F. W., Smits, M. A., Veerkamp, R. F., Calus, M. P. L., Hulsegge, B., Hiemstra, S. J., Boer, M. & Windig, J. J., 2013, Proceedings of the 20th Congress of Animal Science and Production Association, 11-13 June 2013, Bologna, Italy. Vol. 12. p. C-001-C-001

Research output: Chapter in Book/Report/Conference proceedingAbstract

Selection of SNP from 50K and 777K arrays to predict breed of origin in cattle

Hulsegge, B., Calus, M. P. L., Windig, J. J., Hoving, A. H., Maurice - Van Eijndhoven, M. H. T. & Hiemstra, S. J., 2013, In : Journal of Animal Science. 91, 11, p. 5128-5134

Research output: Contribution to journalArticleAcademicpeer-review

13 Citations (Scopus)

Toggenburger in de genenbank. NOG nieuws (interview)

Schenk, M., Sulkers, H., Hulsegge, B. & Hoving-Bolink, A. H., 2013, In : Geitenhouderij. 17, 6, p. 34-35

Research output: Contribution to journalArticleProfessional

Open Access

Winning en opslag van sperma van zeldzame Nederlandse schapen- en geitenrassen in de genenbank (2001-2012)

Hoving, A. H., Sulkers, H., Zuidberg, C. A., Hulsegge, B., Woelders, H., de Wit, A. A. C. & Hiemstra, S. J., 2013, Lelystad: Centrum voor Genetische Bronnen Wageningen UR. 30 p. (CGN rapport / Centrum voor Genetische Bronnen Nederland; no. 29)

Research output: Book/ReportReportProfessional

Open Access
2014

Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle

van Binsbergen, R., Bink, M. C. A. M., Calus, M. P. L., van Eeuwijk, F. A., Hayes, B. J., Hulsegge, B. & Veerkamp, R. F., 2014, In : Genetics, Selection, Evolution. 46, 25 p., 41.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
63 Citations (Scopus)

DNA-onderzoek beantwoordt veel vragen over het Roodbont Fries Vee

Oldenbroek, J. K., Calus, M. P. L., Windig, J. J. & Hulsegge, B., 2014, In : Zeldzaam huisdier. 39, 3, p. 12-15

Research output: Contribution to journalArticleProfessional

Open Access