20032020

Research output per year

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Research Output

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Abstract
2020

Accelerated discovery of functional variation in pigs

Derks, M. F. L., Megens, H. J. W. C., Bosse, M., Lopes, M. S., Harlizius, B. & Groenen, M., 14 Feb 2020, Wias Annual Conference 2020: Frontiers in Animal Sciences. WIAS, p. 38-38

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Coding and non-coding changes drive the repeated evolution of the placenta in live-bearing fish

van Kruistum, H., Nijland, R., Reznick, D. N., Groenen, M., Pollux, B. J. A. & Megens, H. J. W. C., 14 Feb 2020, Wias Annual Conference 2020: Frontiers in Animal Sciences. WIAS, p. 41-41

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Genome-Wide Association Analysis of adaptation to oxygen variations in Nile Tilapia (Oreochromis niloticus)

Yu, X., Megens, H. J. W. C., Mengistu, S. & Groenen, M., 14 Feb 2020, Wias Annual Conference 2020: Frontiers in Animal Sciences. WIAS, p. 45-45

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

The chromosome-scale genome assembly of Visayan warty pig provides insight into porcine evolutionary history

Liu, L., Megens, H. J. W. C., Crooijmans, R. P. M. A., Groenen, M. & Madsen, O., 14 Feb 2020, WIAS Annual Conference 2020: Frontiers in Animal Sciences. WIAS, p. 25-25

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access
2019

Effect of population bottlenecks on patterns of deleterious variation in small captive populations

Bortoluzzi, C., Bosse, M., Derks, M. F. L., Crooijmans, R. P. M. A., Groenen, M. & Megens, H. J. W. C., 26 Aug 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 106-106 (Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

The genomes of Poeciliopsis retropinna and Poeciliopsis turrubarensis reflect differences in reproductive strategy

van Kruistum, H., Guernsey, M. W., Baker, J. C., Kloet, S. L., Groenen, M. A. M., Pollux, B. J. A. & Megens, H. J., Aug 2019.

Research output: Contribution to conferenceAbstractAcademic

The little Pygmy hog (Porcula salvania), a big piece in resolving the fascinating history of the complex speciation of the Suidae

Liu, L., Bosse, M., Megens, H. J. W. C., Frantz, L. A. F., Lee, Y. L., Irving-Pease, E. K., Narayan, G., Groenen, M. & Madsen, O., 9 Jul 2019, ISAG 2019 Abstracts Book: 37th International Society for Animal Genetics Conference, July 7-12, 2019 - Lleida, Spain. p. 24-25

Research output: Chapter in Book/Report/Conference proceedingAbstract

2018

Impact of merging different commercial lines on genetic diversity of the Dutch Landrace pigs

Hulsegge, B., Calus, M. P. L., Hoving-Bolink, A. H., Lopes, M. S., Megens, H. J. W. C. & Oldenbroek, J. K., 27 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 554-554 (Book of abstracts; no. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

2017

The impact of genome editing on the introduction of monogenic traits in livestock

Bastiaansen, J. W. M., Bovenhuis, H., Groenen, M., Megens, H. J. W. C. & Mulder, H. A., 2017, Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 428-428 (Book of abstracts; no. 23).

Research output: Chapter in Book/Report/Conference proceedingAbstract

2015

Accuracy of genomic prediction using whole genome sequence data in White egg layer chickens

Heidaritabar, M., Calus, M. P. L., Megens, H. J. W. C., Groenen, M. A. M., Vereijken, A. & Bastiaansen, J. W. M., 2015, Book of Abstracts 66th Annual Meeting of the EAAP. Wageningen Academic Publishers, Vol. 21. p. 246

Research output: Chapter in Book/Report/Conference proceedingAbstract

Genetic diversity of different indigenous chicken ecotypes using highly polymorphic MHC-linked and non-MHC microsatellite markers

Ngeno, K., van der Waaij, E. H., Megens, H. J. W. C., Kahi, A. K., van Arendonk, J. A. M. & Crooijmans, R. P. M. A., 2015, Improving Indigenous Chicken Productivity for Health and Wealth. p. 33-33

Research output: Chapter in Book/Report/Conference proceedingAbstract

Genetic Variation and Signatures of Selection in the Genomes of Kenyan Indigenous Chicken and Commercial Layers

Ngeno, K., Herrero-Medrano, J., van der Waaij, E. H., Kahi, A. K., Megens, H. J. W. C., van Arendonk, J. A. M. & Crooijmans, R. P. M. A., 2015, Improving Indigenous Chicken Productivity for Health and Wealth. p. 40-40

Research output: Chapter in Book/Report/Conference proceedingAbstract

The impact of gene flow, standing genetic variations and strong artificial selection during pig domestication

Frantz, L. A. F., Schraiber, J. G., Megens, H. J. W. C., Madsen, O., Battista, V., Larson, I. & Groenen, M., 2015.

Research output: Contribution to conferenceAbstractAcademic

2014

Domestication with gene-flow in pigs

Frantz, L. A. F., Bosse, M., Megens, H. J. W. C., Madsen, O., Paudel, Y., Crooijmans, R. P. M. A. & Groenen, M., 2014.

Research output: Contribution to conferenceAbstractAcademic

Effects of Isolation and human-mediated introgression in shaping the genomic distinctiveness of an insular large mammal

Iacolina, L., Scandura, M., Goedbloed, D. J., Alexandri, P., Crooijmans, R. P. M. A., Larson, G., Groenen, M. & Megens, H. J. W. C., 2014.

Research output: Contribution to conferenceAbstractAcademic

FAANG Pilot projects: Comprehensive analysis of RNA-editing in pigs

Madsen, O., Crooijmans, R. P. M. A., Paudel, Y., Frantz, L. A. F., Bosse, M., Megens, H. J. W. C. & Groenen, M., 2014.

Research output: Contribution to conferenceAbstractAcademic

Great tit de novo genome assembly and annotation

Laine, V., van Oers, K., Madsen, O., Megens, H. J. W. C., Verhulst, E. C., Verhoeven, M. T. W., Visser, M. E. & Groenen, M., 2014.

Research output: Contribution to conferenceAbstractAcademic

Pig variomics: understanding the when, where, and why of variation in the genome of Sus scrofa

Megens, H. J. W. C., Bosse, M., Madsen, O., Frantz, L. A. F., Paudel, Y., Herrero-Medrano, J., Crooijmans, R. P. M. A. & Groenen, M., 2014.

Research output: Contribution to conferenceAbstractAcademic

2011

Lines And SINEs In Suids: The Repetitive Genomic Landscape In Sus scrofa And Related Pig Species

Groenen, M. A. M., Megens, H. J. W. C., Crooijmans, R. P. M. A., Madsen, O., Takeuchi, Y., Faulkner, G., Rogel Gaillard, C., Ma, J. & Schook, L. B., 2011.

Research output: Contribution to conferenceAbstractAcademic

Sequencing Multiple Genomes Of The Pig And Other Suids: Insights In Speciation And Selection

Groenen, M. A. M., Megens, H. J. W. C., Crooijmans, R. P. M. A., Madsen, O., Bosse, M., Paudel, Y., Frantz, L. A. F., Ma, J., Cunningham, R. & Schook, L. B., 2011.

Research output: Contribution to conferenceAbstractAcademic

Sequencing Suids: unraveling the genomic variation landscape of Sus scrofa and related species by whole genome sequencing

Megens, H. J. W. C., Madsen, O., Bosse, M., Paudel, Y., Frantz, L. A. F., Semiadi, G., Schook, L. B., Crooijmans, R. P. M. A. & Groenen, M. A. M., 2011.

Research output: Contribution to conferenceAbstractAcademic

2010

Genome-wide assessment of diversity in the pig and other suids

Groenen, M. A. M., Megens, H. J. W. C., Crooijmans, R. P. M. A., Larson, B. A., Muir, W. M., Archibald, A. L., Ma, J. & Schook, L. B., 2010.

Research output: Contribution to conferenceAbstractAcademic

Insights From Whole Genome Sequence Alignment Of The Domestic (Sus scrofa And Javan Warty (Sus verrucosus) Pigs

Groenen, M. A. M., Megens, H. J. W. C., Crooijmans, R. P. M. A., Semiadi, G. & Schook, L. B., 2010, Book of Abstracts of the Plant and Animal Genome XVIII Conference, San Diego, CA, USA, 9-13 Januari 2010. p. w619

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Linkage Disequilibrium, Haplotype Sharing And Prospects For Hapmapping The Chicken Genome

Megens, H. J. W. C., Crooijmans, R. P. M. A., Bastiaansen, J. W. M., Vereijken, A., Cheng, H. H., Muir, W. M. & Groenen, M. A. M., 2010.

Research output: Contribution to conferenceAbstractAcademic

The Porcine HapMap Project: Genome-Wide Assessment Of Nucleotide Diversity, Haplotype Diversity And Footprints Of Selection In The Pig

Groenen, M. A. M., Amaral, A. J., Megens, H. J. W. C., Larson, B. A., Archibald, A. L., Muir, W. M., Malhi, Y., Crooijmans, R. P. M. A., Ferretti, L., Perez-Encizo, M. & Schook, L. B., 2010, Book of Abstracts of the Plant and Animal Genome XVIII Conference, San Diego, California, USA, 9-13 Januari 2010. p. w609

Research output: Chapter in Book/Report/Conference proceedingAbstract

2008

A Perl Based Data Mining Workflow For Animal Breeding - From Phenotype To SNP

Megens, H. J. W. C., Crooijmans, R. P. M. A., Harlizius, B., Kollers, S., Mullaart, E., Jungerius, B. J., Kerstens, H. H. D. & Groenen, M. A. M., 2008.

Research output: Contribution to conferenceAbstractAcademic

Open Access

Comparative analysis and linkage disequilibrium in European and Chinese pig breeds

Amaral, A. J., Megens, H. J. W. C., Heuven, H. C. M., Crooijmans, R. P. M. A. & Groenen, M. A. M., 2008.

Research output: Contribution to conferenceAbstractAcademic

Genome-Wide Assessment Of World-Wide Poultry Biodiversity

Muir, W. M., Wong, G. K., Zhang, Y., Wang, J., Groenen, M. A. M., Crooijmans, R. P. M. A., Megens, H. J. W. C. & Rattink, A. P., 2008.

Research output: Contribution to conferenceAbstractAcademic

Open Access

Genome wide SNP discovery in pig using 1G Genome Analyzer: How to play around with sequence length, quality level and mapping qualities

Amaral, A. J., Kerstens, H. H. D., Megens, H. J. W. C. & Dibbits, B. W., 2008.

Research output: Contribution to conferenceAbstractAcademic

Global Assessment Of Chicken Variation Using The 18K Chicken SNP Iselect Infinium Assay

van As, P., Crooijmans, R. P. M. A., Megens, H. J. W. C., Hanotte, O., Vereijken, A. & Groenen, M. A. M., 2008.

Research output: Contribution to conferenceAbstractAcademic

Open Access
2006

The extend of linkage disequilibrium and haplotype structure in the chicken genome

Crooijmans, R. P. M. A., Muir, W. M., Wong, G. K., Megens, H. J. W. C., Groenen, M. A. M., Zhang, H. M. & Cheng, H. H., 2006.

Research output: Contribution to conferenceAbstractAcademic

2003

Rapid and reliable screening of allelic diversity of MHC class II genes in wild Atlantic salmon (Salmo salar)

Megens, H. J. W. C., Leon, K. M., Schaschl, H., Jordan, B. & Stet, R. J. M., 2003, 9th International Congress of ISDCI, St. Andrews Scotland; programme & abstracts. Dyrynda, E. A. (ed.). p. 174

Research output: Chapter in Book/Report/Conference proceedingAbstract