Datasets
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Data underlying the publication: ‘Effects of E. coli Nissle 1917 on the Porcine Gut Microbiota and Immune System in Early Life’
Geervliet, M. (Creator), de Vries, H. (Creator), Jansen, C. (Creator), Rutten, V. (Creator), van Hees, H. M. J. (Creator), Wen, C. (Creator), Skovgaard, K. (Creator), Antonello, G. (Creator), Savelkoul, H. (Creator), Smidt, H. (Creator), Tijhaar, E. (Creator) & Wells, J. (Creator), Wageningen University & Research, 9 Feb 2022
DOI: 10.4121/15060177
Dataset
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Assessment of the Accuracy of Anaerobic Fungal ITS1 Based Barcoded Amplicon Sequencing for Community Composition Analysis
Edwards, J. (Creator), Hermes, G. (Creator), Kittelmann, S. (Creator), Nijsse, B. (Creator) & Smidt, H. (Creator), Wageningen University, 9 Dec 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB29131
Dataset
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uncultured bacterium 16S ribosomal RNA gene, partial sequence
van Houten, B. H. G. W. (Creator), Roest, C. (Creator), Tzeneva, V. A. (Creator), Dijkman, H. (Creator), Smidt, H. (Creator) & Stams, A. J. M. (Creator), Wageningen University & Research, 27 Aug 2009
https://www.ncbi.nlm.nih.gov/popset/70727920
Dataset
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Bacteria 16S ribosomal RNA gene, partial sequence
Bello Gonzalez, T. (Creator), Zuidema, T. (Creator), Bor, G. (Creator), Smidt, H. (Creator) & van Passel, M. W. J. (Creator), Wageningen University & Research, 17 Mar 2016
https://www.ncbi.nlm.nih.gov/popset/948563205
Dataset
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Re-stabilisation processes after scraping of full-scale slow sand filters
Trikannad, S. A. (Creator), Attiani, V. (Creator), van der Wielen, P. (Creator), Smidt, H. (Creator), van der Hoek, J. P. (Creator) & van Halem, D. (Creator), Wageningen University & Research, 1 May 2024
https://www.ebi.ac.uk/ena/browser/view/PRJEB72542
Dataset
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Data from: Impact of Yeast-Derived β-Glucans on the Porcine Gut Microbiota and Immune System in Early Life
de Vries, H. (Creator), Geervliet, M. (Creator), Jansen, C. A. (Creator), Rutten, V. P. M. G. (Creator), van Hees, H. M. J. (Creator), Groothuis, N. (Creator), Wells, J. (Creator), Savelkoul, H. (Creator), Tijhaar, E. (Creator) & Smidt, H. (Creator), Wageningen University & Research, 12 Nov 2020
DOI: 10.4121/12999620
Dataset
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Genome sequence of Desulfitobacterium hafniense PCE-S
Goris, T. (Creator), Hornung, B. V. H. (Creator), Kruse, T. (Creator), Reinhold, A. (Creator), Westermann, M. (Creator), Schaap, P. (Creator), Smidt, H. (Creator) & Diekert, G. (Creator), Wageningen University, 15 Oct 2014
https://www.ebi.ac.uk/ena/data/view/PRJEB6708
Dataset
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Tubulinea 18S ribosomal RNA gene, partial sequence
Kuiper, M. W. (Creator), Valster, R. M. (Creator), Wullings, B. (Creator), Boonstra, H. (Creator), Smidt, H. (Creator) & van der Kooij, D. (Creator), Wageningen University & Research, 7 Sept 2006
https://www.ncbi.nlm.nih.gov/popset/77701904
Dataset
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uncultured bacterium 16S ribosomal RNA gene, partial sequence
van Houten, B. H. G. W. (Creator), van Doesburg, W. (Creator), Dijkman, H. (Creator), Copini, C. F. M. (Creator), Smidt, H. (Creator) & Stams, A. J. M. (Creator), Wageningen University & Research, 9 Sept 2009
https://www.ncbi.nlm.nih.gov/popset/90896310
Dataset
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β2→1-fructans modulate the immune system in vivo in a microbiota-dependent and -independent fashion
Fransen, F. (Creator), Sahasrabudhe, N. M. (Creator), Elderman, M. (Creator), Bosveld, M. (Creator), El Aidy, S. (Creator), Hugenholtz, F. (Creator), Borghuis, T. (Creator), Kousemaker, B. (Creator), Winkel, S. (Creator), van der Gaast-de Jongh, C. (Creator), de Jonge, M. I. (Creator), Boekschoten, M. (Creator), Smidt, H. (Creator) & de Vos, P. (Creator), Wageningen University, 22 Mar 2018
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE94516
Dataset
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Organohalide respiration in a pristine hypersaline lake
Peng, P. (Creator), Lu, Y. (Creator), Nijenhuis, I. (Creator), Nijsse, B. (Creator), Shetty, S. (Creator), Ruecker, A. (Creator), Umanetc, A. (Creator), Ramiro Garcia, J. (Creator), Kappler, A. (Creator), Sipkema, D. (Creator), Smidt, H. (Creator) & Atashgahi, S. (Creator), Wageningen University & Research, 30 Mar 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB14107
Dataset
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Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis
Gavriilidou, A. (Creator), Gutleben, J. (Creator), Versluis, D. (Creator), Forgiarini, F. (Creator), van Passel, M. (Creator), Ingham, C. J. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University & Research, 21 Aug 2020
DOI: 10.6084/m9.figshare.c.5097999
Dataset
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Demospongiae 18S ribosomal RNA gene, partial sequence
Dat, T. T. H. (Creator), Steinert, G. (Creator), Cuc, N. T. K. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University & Research, 19 Jun 2018
https://www.ncbi.nlm.nih.gov/popset/1190354016
Dataset
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Genome sequencing of Marine Flavobacteriaceae isolated from sponges
Gavriilidou, A. (Creator), Gutleben, J. (Creator), Versluis, D. (Creator), Forgiarini, F. (Creator), van Passel, M. (Creator), Ingham, C. J. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University, 6 Jan 2020
https://www.ebi.ac.uk/ena/browser/view/PRJEB35092
Dataset
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Nutritional impact of a novel iron-containing protein meal on gastrointestinal tract functioning in larval zebrafish Danio rerio: characterisation of microbial communities and mRNAseq gene expression analysis
Rurangwa, E. (Creator), Sipkema, D. (Creator), Kals, J. (Creator), ter Veld, M. (Creator), Forlenza, M. (Creator), Bacanu, M. G. (Creator), Smidt, H. (Creator) & Palstra, A. (Creator), Wageningen University, 16 Dec 2013
https://www.ebi.ac.uk/ena/data/view/PRJEB4784
Dataset
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Bacterial composition of Nannochloropsis sp. CCAP211/78 in outdoor reactors Raw sequence reads
Lian, J. (Creator), Schimmel, P. (Creator), Sanchez-Garcia, S. (Creator), Wijffels, R. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University & Research, 28 Aug 2018
https://www.ncbi.nlm.nih.gov/bioproject/488170
Dataset
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bacterial community growing along Nannochloropsis sp. CCAP211/78 in outdoor pilot-scale reactors Raw sequence reads
Lian, J. (Creator), Steinert, G. (Creator), de Vree, J. (Creator), Meijer, S. (Creator), Heryanto, C. (Creator), Bosma, R. (Creator), Wijffels, R. (Creator), Barbosa, M. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University & Research, 10 Apr 2017
https://www.ncbi.nlm.nih.gov/bioproject/382322
Dataset
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Molecular analysis of sponge-associated fungi
Mohamad, M. A. N. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University, 31 Mar 2013
https://www.ebi.ac.uk/ena/data/view/PRJEB1704
Dataset
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Cultivation of bacteria from Aplysina aerophoba: effects of oxygen and nutrient gradients
Gutleben, J. (Creator), Sales E Santos Loureiro, C. (Creator), Ramírez Romero, L. A. (Creator), Shetty, S. (Creator), Wijffels, R. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University, 30 Jul 2019
https://www.ebi.ac.uk/ena/data/view/PRJEB31820
Dataset
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marine sponge biosynthetic profiles
Gavriilidou, A. (Creator), Avcı, B. (Creator), Galani, A. (Creator), Schorn, M. A. (Creator), Ingham, C. J. (Creator), Ettema, T. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University & Research, 5 Jul 2022
https://www.ebi.ac.uk/ena/browser/view/PRJEB51534
Dataset
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Dataset for the article: Unravelling the contribution of nitrifying and methanotrophic bacteria to micropollutant co-metabolism in rapid sand filters
Wang, J. (Creator), Zhang, C. (Creator), Poursat, B. A. J. (Creator), de Ridder, D. (Creator), Smidt, H. (Creator), van der Wal, B. (Creator) & Sutton, N. (Creator), Wageningen University, 20 Feb 2023
DOI: 10.4121/21985049
Dataset
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Bioaugmentation_simulated_gw_systems
Aldas Vargas, A. (Creator), Kers, J. G. (Creator), Smidt, H. (Creator), Rijnaarts, H. (Creator) & Sutton, N. (Creator), Wageningen University and Research Centre, 20 Jan 2023
https://www.ebi.ac.uk/ena/browser/view/PRJEB42809
Dataset
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uncultured bacterium 16S ribosomal RNA gene, partial sequence
Sutton, N. (Creator), Langenhoff, A. (Creator), Hidalgo Lasso, D. (Creator), van der Zaan, B. M. (Creator), van Gaans, P. (Creator), Maphosa, F. (Creator), Smidt, H. (Creator), Grotenhuis, T. (Creator) & Rijnaarts, H. (Creator), Wageningen University & Research, 27 Feb 2014
https://www.ncbi.nlm.nih.gov/popset/526131411
Dataset
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Exploring groundwater microbial communities for natural attenuation potential of micropollutants (pesticides)
Aldas Vargas, A. (Creator), Hauptfeld, T. (Creator), Hermes, G. (Creator), Atashgahi, S. (Creator), Smidt, H. (Creator), Rijnaarts, H. (Creator) & Sutton, N. (Creator), Wageningen University, 29 Oct 2021
https://www.ebi.ac.uk/ena/browser/view/PRJEB34986
Dataset
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High throughput cultivation-based screening on the MicroDish platform allows targeted isolation of antibiotic resistant human gut bacteria
Versluis, D. (Creator), Bello Gonzalez, T. (Creator), Zoetendal, E. (Creator), van Passel, M. (Creator) & Smidt, H. (Creator), Wageningen University, 9 Jan 2019
https://www.ebi.ac.uk/ena/data/view/PRJEB27463
Dataset