20062020

Research output per year

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Research Output

2020

Capturing variation in floral shape; a virtual3D based morphospace for Pelargonium

van de Kerke, S. J., van Engelenhoven, T., Es, van, A., Schat, L., van Son, L., Vink, S., Hemerik, A., van Velzen, R., Schranz, M. E. & Bakker, F. T., 2020, In : PeerJ PrePrints.

Research output: Contribution to journalArticleAcademic

Open Access
2019

A blueprint of seed desiccation sensitivity in the genome of Castanospermum australe

Correia Silva Santana Marques, A., Dias Costa, M. C., Chathuri, U., Jonkheer, E., Zhao, T., Schijlen, E. G. W. M., Derks, M. F. L., Nijveen, H., Marcet-Houben, M., Julca, I., Delahaie, J., Schranz, E., Gabaldon, T., Pelletier, S., Leprince, O., Ligterink, W., Buitink, J., Hilhorst, H. W. M. & Farrant, J. M., 10 Jun 2019.

Research output: Working paperAcademic

Open Access
Open Access

Association between vitamin content, plant morphology and geographical origin in a worldwide collection of the orphan crop Gynandropsis gynandra (Cleomaceae)

Sogbohossou, E. O. D., Kortekaas, D., Achigan-Dako, E. G., Maundu, P., Stoilova, T., Van Deynze, A., de Vos, C. H. & Schranz, M. E., Sep 2019, In : Planta. 250, 3, p. 933-947 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Comparative analysis of repetitive sequences among species from the potato and the tomato clades

Gaiero Guadagna, P., Vaio, M., Peters, S. A., Schranz, M. E., de Jong, J. H. S. G. M. & Speranza, P. R., 15 Feb 2019, In : Annals of Botany. 123, 3, p. 521-532

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Dissecting the genomic diversification of Late Embryogenesis Abundant (LEA) protein gene families in plants

Silva Artur, M. A., Zhao, T., Ligterink, W., Schranz, E. & Hilhorst, H. W. M., 1 Feb 2019, In : Genome Biology. 11, 2, p. 459-471

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Drivers of metabolic diversification: how dynamic genomic neighbourhoods generate new biosynthetic pathways in the Brassicaceae

Liu, Z., Suarez Duran, H., Harnvanichvech, Y., Stephenson, M. J., Schranz, M. E., Nelson, D., Medema, M. H. & Osbourn, A., 26 Nov 2019, In : New Phytologist.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Genome Improvement and Genetic Map Construction for Aethionema arabicum, the First Divergent Branch in the Brassicaceae Family.

Nguyen, T. P., Mülich, C., Mohammadin, S., van den Bergh, E., Platts, A. E., Haas, F. B., Rensing, S. A. & Schranz, M. E., 1 Nov 2019, In : Genes, Genomes and Genomics. 9, 11, p. 3521-3530

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Identifying and Engineering Genes for Parthenogenesis in Plants

Vijverberg, C. A., Ozias-Akins, P. & Schranz, M. E., 19 Feb 2019, In : Frontiers in Plant Science. 10, 128.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)
Open Access
6 Citations (Scopus)

Origins and geographic diversification of African rice (Oryza glaberrima)

Veltman, M. A., Flowers, J. M., van Andel, T. R. & Eric Schranz, M., 1 Mar 2019, In : PLoS ONE. 14, 3, e0203508.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Photosynthesis 2.0

Aarts, M. G. M., van Amerongen, H., Bock, R., Carmo-Silva, E., Croce, R., Finazzi, G., Foyer, C., Genty, B., Harbinson, J., Hibberd, J., Klein Lankhorst, R. M., Schranz, M. E., Struik, P. C. & Weijers, D., 2019, 5 p. Wageningen University and Research.

Research output: Other contributionPamphlet

Open Access

Plastome based phylogenetics and younger crown node age in Pelargonium

van de Kerke, S. J., Shrestha, B., Ruhlman, T. A., Weng, M. L., Jansen, R. K., Jones, C. S., Schlichting, C. D., Hosseini, S., Mohammadin, S., Schranz, M. E. & Bakker, F. T., 1 Aug 2019, In : Molecular Phylogenetics and Evolution. 137, p. 33-43 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Recently duplicated sesterterpene (C25) gene clusters in Arabidopsis thaliana modulate root microbiota

Chen, Q., Jiang, T., Liu, Y-X., Liu, H., Zhao, T., Liu, Z., Gan, X., Hallab, A., Wang, X., He, J., Ma, Y., Zhang, F., Jin, T., Schranz, M. E., Wang, Y., Bai, Y. & Wang, G., Jul 2019, In : Science in China Series C-Life Sciences. 62, 7, p. 947-958

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

The alternative reality of plant mitochondrial DNA: One ring does not rule them all

Kozik, A., Rowan, B. A., Lavelle, D., Berke, L., Schranz, E. M., Michelmore, R. W. & Christensen, A. C., 30 Aug 2019, In : Plos Genetics. 15, 8, p. e1008373

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Usability of reference-free transcriptome assemblies for detection of differential expression: A case study on Aethionema arabicum dimorphic seeds

Wilhelmsson, P. K. I., Chandler, J. O., Fernandez-Pozo, N., Graeber, K., Ullrich, K. K., Arshad, W., Khan, S., Hofberger, J. A., Buchta, K., Edger, P. P., Pires, J. C., Schranz, M. E., Leubner-Metzger, G. & Rensing, S. A., 30 Jan 2019, In : BMC Genomics. 20, 1, 95.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)
2018

Andromonoecy in Gynandropsis gynandra (L.) Briq. (Cleomaceae) and effects on fruit and seed production

Zohoungbogbo, H. P. F., Houdegbe, C. A., Sogbohossou, D. E. O., Tossou, M. G., Maundu, P., Schranz, E. M., Van Deynze, A., Zoundjihekpon, J. & Achigan-Dako, E. G., Dec 2018, In : Genetic Resources and Crop Evolution. 65, 8, p. 2231–2239

Research output: Contribution to journalArticleAcademicpeer-review

A roadmap for breeding orphan leafy vegetable species: A case study of Gynandropsis gynandra (Cleomaceae)

Sogbohossou, E. O. D., Achigan-Dako, E. G., Maundu, P., Solberg, S., Deguenon, E. M. S., Mumm, R. H., Hale, I., van Deynze, A. & Schranz, M. E., 10 Jan 2018, In : Horticulture Research. 5, 1, 2.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
15 Citations (Scopus)

Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses

Edger, P. P., Hall, J. C., Harkess, A., Tang, M., Coombs, J., Mohammadin, S., Schranz, E., Xiong, Z., Leebens-Mack, J., Meyers, B. C., Sytsma, K. J., Koch, M. A., Al-Shehbaz, I. A. & Pires, J. C., Mar 2018, In : American Journal of Botany. 105, 3, p. 463-469

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
14 Citations (Scopus)

Cloning and Functional Analysis of three Cold Regulated CBF Genes in the Overwintering Crucifer Boechera stricta

Heo, J., van Tienderen, P. & Schranz, M. E., 2018, In : International Journal of Agriculture & Biology. 20, 3, p. 594-600

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

van Velzen, R., Holmer, R., Bu, F., Rutten, L. J. J., van Zeijl, A. L., Liu, W., Santuari, L., Cao, Q., Sharma, T., Shen, D., Purwana Roswanjaya, Y., Wardhani, T., Seifi Kalhor, M., Jansen, J., van den Hoogen, D. J., Güngör, B., Hartog, M. V., Hontelez, J., Verver, J., Yang, W-C. & 11 others, Schijlen, E. G. W. M., Repin, R., Schilthuizen, M., Schranz, M. E., Heidstra, R., Miyata, K., Fedorova, E., Kohlen, W., Bisseling, A. H. J., Smit, S. & Geurts, R., 15 May 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 20, p. E4700-E4709

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
51 Citations (Scopus)

Diacylglycerol acyltransferase 1 contributes to freezing tolerance

Arisz, S. A., Heo, J-Y., Koevoets, I. T., Zhao, T., van Egmond, P., Meyer, J., Zeng, W., Niu, X., Wang, B., Mitchell-Olds, T., Schranz, M. E. & Testerink, C., Aug 2018, In : Plant Physiology. 177, 4, p. 1410-1424

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
16 Citations (Scopus)

Drivers of Management of Spider Plant (Gynandropsis gynandra) Across Different Socio-linguistic Groups in Benin and Togo

Sogbohossou, E. O. D., Achigan Dako, E., van Andel, T. & Schranz, M. E., Dec 2018, In : Economic Botany. 72, 4, p. 411-435 25 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Efficient inference of homologs in large eukaryotic pan-proteomes

Sheikhizadeh Anari, S., de Ridder, D., Schranz, M. E. & Smit, S., 26 Sep 2018, In : BMC Bioinformatics. 19, 1, 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Genome-wide nucleotide diversity and associations with geography, ploidy level and glucosinolate profiles in Aethionema arabicum (Brassicaceae)

Mohammadin, S., Wang, W., Liu, T., Moazzeni, H., Ertugrul, K., Uysal, T., Christodoulou, C. S., Edger, P. P., Pires, J. C., Wrigth, S. I. & Schranz, M. E., May 2018, In : Plant Systematics and Evolution. 304, 5, p. 619-630

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Lessons from Cleomaceae, the Sister fo Crucifers

Bayat, S., Schranz, M. E., Roalson, E. H. & Hall, J. C., Sep 2018, In : Trends in Plant Science. 23, 9, p. 808-821

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Natural variation within a species for traits underpinning C4 photosynthesis

Reeves, G., Singh, P., Rossberg, T. A., Sogbohossou, E. O. D., Schranz, M. E. & Hibberd, J. M., 1 Jun 2018, In : Plant Physiology. 177, 2, p. 504-512

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

New insights into the phylogeny of the TMBIM superfamily across the three of life: Comparative genomics and synteny networks reveal independent evolution of the BI and LFG families in plants

Gamboa-Tuz, S. D., Pereira-Santana, A., Zhao, T., Schranz, M. E., Castano, E. & Rodriguez-Zapata, L. C., Sep 2018, In : Molecular Phylogenetics and Evolution. 126, p. 266-278

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

PISTILLATA paralogs in Tarenaya hassleriana have diverged in interaction specificity

de Bruijn, S., Zhao, T., Muiño, J. M., Schranz, E. M., Angenent, G. C. & Kaufmann, K., 22 Dec 2018, In : BMC Plant Biology. 18, 1, 368.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

The functional change and deletion of FLC homologs contribute to the evolution of rapid flowering in Boechera stricta

Lee, C-R., Hsieh, J-W., Schranz, M. E. & Mitchell-Olds, T., 31 Jul 2018, In : Frontiers in Plant Science. 9, 1078.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)
2017

Anatolian origins and diversification of Aethionema, the sister lineage of the core Brassiceae

Mohammadin, S., Peterse, K., van de Kerke, S. J., Chatrou, L. W., Dönmez, A. A., Mummenhoff, K., Pires, J. C., Edger, P. P., Al-Shehbaz, I. A. & Schranz, M. E., 2017, In : American Journal of Botany. 104, 7, p. 1042-1054

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
14 Citations (Scopus)

Comparative transcriptomics reveal developmental turning points during embryogenesis of a hemimentabolous insect, the damselfly Ischnura elegans

Simon, S., Sagasser, S., Saccenti, E., Brugler, M. R., Schranz, M. E., Hadrys, H., Amato, G. & DeSalle, R., 19 Oct 2017, In : Scientific Reports. 7, 1, 14 p., 13547.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Flowering locus C (FLC) is a potential major regulator of glucosinolate content across developmental stages of Aethionema arabicum (brassicaceae)

Mohammadin, S., Nguyen, P., van Weij, M. S., Reichelt, M. & Schranz, E., 2017, In : Frontiers in Plant Science. 8, 876.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Identification of the submergence tolerance QTL Come Quick Drowning1 (CGD1) in Arabidopsis thaliana

Akman, M., Kleine, R., van Tienderen, P. H. & Schranz, E. M., 2017, In : Journal of Heredity. 108, 3, p. 308-317

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Network approaches for plant phylogenomic synteny analysis

Zhao, T. & Schranz, E., 2017, In : Current Opinion in Plant Biology. 36, p. 129-134

Research output: Contribution to journalArticleAcademicpeer-review

9 Citations (Scopus)

Parallel loss of symbiosis genes in relatives of nitrogen-fixing non-legume Parasponia

van Velzen, R., Holmer, R., Bu, F., Rutten, L. J. J., van Zeijl, A. L., Liu, W., Santuari, L., Cao, Q., Sharma, T., Shen, D., Purwana Roswanjaya, Y., Wardhani, T., Seifi Kalhor, M., Jansen, J., van den Hoogen, D. J., Gungor, B., Hartog, M. V., Hontelez, J., Verver, J. W. G., Yang, W. C. & 11 others, Schijlen, E. G. W. M., Repin, R., Schilthuizen, M., Schranz, M. E., Heidstra, R., Miyata, K., Fedorova, E., Kohlen, W., Bisseling, A. H. J., Smit, S. & Geurts, R., 28 Jul 2017, BioRxiv, 88 p.

Research output: Working paperAcademic

Phylogenetic relationships within Lactuca L. (Asteraceae), including African species, based on chloroplast DNA sequence comparisons

Wei, Z., Zhu, S. X., van den Berg, R. G., Bakker, F. T. & Schranz, M. E., 2017, In : Genetic Resources and Crop Evolution. 64, 1, p. 55-71

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
15 Citations (Scopus)

Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation

Zhao, T., Holmer, R., de Bruijn, S. A., Angenent, G. C., van den Burg, H. A. & Schranz, M. E., 7 Jul 2017, In : The Plant Cell. 29, 6, p. 1278-1292

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
23 Citations (Scopus)

Polyploidy in deep and shallow evolutionary times: from ancient cotton, middle aged tobacco to recently formed monkey-flowers

Kovarik, A., Besendorfer, V., Plohl, M. & Schranz, E., 3 Oct 2017, In : Plant Systematics and Evolution. 3 p.

Research output: Contribution to journalShort surveyAcademicpeer-review

Open Access
1 Citation (Scopus)

Young inversion with multiple linked QTLs under selection in a hybrid zone

Lee, C-R., Wange, B., Mojica, J. P., Mandakova, T., Prasad, K. V. S. K., Goicoechea, J. L., Perera, N., Hellsten, U., Hundley, H. N., Johnson, J., Grimwood, J., Barry, K., Fairclough, S., Jenkins, J. W., Yu, Y., Kudrna, D., Zhang, J., Talag, J., Golser, W., Ghattas, K. & 4 others, Schranz, E., Wing, R. A., Lysak, M. A. & Schmutz, J., 2017, In : Nature Ecology & Evolution. 1, 5, 11 p., 0119.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
31 Citations (Scopus)
2016

Comparative paleogenomics of crucifers: Ancestral genomic blocks revisited

Lysak, M. A., Mandáková, T. & Schranz, E., 1 Apr 2016, In : Current Opinion in Plant Biology. 30, p. 108-115

Research output: Contribution to journalArticleAcademicpeer-review

27 Citations (Scopus)

Developmental control and plasticity of fruit and seed dimorphism in aethionema arabicum

Lenser, T., Graeber, K., Cevik, Ö. S., Mohammadin, S., Nguyen, P., Schranz, M. E. & Scheid, O. M., 2016, In : Plant Physiology. 172, 3, p. 1691-1707

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
22 Citations (Scopus)
Open Access
16 Citations (Scopus)

Functional network analysis of genes differentially expressed during xylogenesis in soc1ful woody Arabidopsis plants

Davin, N., Edger, P. P., Hefer, C. A., Mizrachi, E., Schuetz, M., Smets, E., Myburg, A. A., Douglas, C. J., Schranz, E. & Lens, F., 2016, In : The Plant Journal. 86, 5, p. 376-390

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
15 Citations (Scopus)

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida

Bombarely, A., Moser, M., Amrad, A., Bao, M., Bapaume, L., Barry, C. S., Bliek, M., Boersma, M. R., Borghi, L., Bruggmann, R., Bucher, M., D'Agostino, N., Davies, K., Druege, U., Dudareva, N., Egea-Cortines, M., Delledonne, M., Fernandez-Pozo, N., Franken, P., Grandont, L. & 37 others, Heslop-Harrison, J. S., Hintzsche, J., Johns, M., Koes, R., Lv, X., Lyons, E., Malla, D., Martinoia, E., Mattson, N. S., Morel, P., Mueller, L. A., Muhlemann, J., Nouri, E., Passeri, V., Pezzotti, M., Qi, Q., Reinhardt, D., Rich, M., Richert-Pöggeler, K. R., Robbins, T. P., Schatz, M. C., Schranz, E., Schuurink, R. C., Schwarzacher, T., Spelt, K., Tang, H., Urbanus, S. L., Vandenbussche, M., Vijverberg, K., Villarino, G. H., Warner, R. M., Weiss, J., Yue, Z., Zethof, J., Quattrocchio, F., Sims, T. L. & Kuhlemeier, C., 2016, In : Nature Plants. 2, 16074.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
112 Citations (Scopus)

Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana

Fransz, P., Linc, G., Lee, C. R., Aflitos, S. A., Lasky, J. R., Toomajian, C., Ali, H., Peters, J., van Dam, P., Ji, X., Kuzak, M., Gerats, T., Schubert, I., Schneeberger, K., Colot, V., Martienssen, R., Koornneef, M., Nordborg, M., Juenger, T. E., de Jong, H. & 1 others, Schranz, E., 2016, In : The Plant Journal. 88, 2, p. 159-178

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
28 Citations (Scopus)

Natural variation in rosette size under salt stress conditions corresponds to developmental differences between Arabidopsis accessions and allelic variation in the LRR-KISS gene

Julkowska, M. M., Klei, K., Fokkens, L. & Schranz, E., 2016, In : Journal of Experimental Botany. 67, 8, p. 2127-2138

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
21 Citations (Scopus)

PanTools: representation, storage and exploration of pan-genomic data

Sheikhizadeh Anari, S., Schranz, M. E., Akdel, M., de Ridder, D. & Smit, S., 2016, In : Bioinformatics. 32, 17, p. i487-i493

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)

Tracing ancestor rice of Suriname Maroons back to its African origin

Van Andel, T. R., Meyer, R. S., Aflitos, S. A., Carney, J. A., Veltman, M. A., Copetti, D., Flowers, J. M., Havinga, R. M., Maat, H., Purugganan, M. D., Wing, R. A. & Schranz, E., 2016, In : Nature Plants. 2, 16149.

Research output: Contribution to journalArticleAcademicpeer-review

9 Citations (Scopus)

Transcriptomes of eight Arabidopsis thaliana accessions reveal core conserved, genotype- and organ-specific responses to flooding stress

van Veen, H., Vashisht, D., Akman, M., Girke, T., Mustroph, A., Reinen, E., Hartman, S., Kooiker, M., van Tienderen, P., Schranz, E., Bailey-Serres, J., Voesenek, L. A. C. J. & Sasidharan, R., 2016, In : Plant Physiology. 172, 2, p. 668-689

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
32 Citations (Scopus)