20032020

Research output per year

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Article
2020

Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing

Fuentes, R., Hesselink, T., Nieuwenhuis, R., Bakker, L. V., Schijlen, E. G. W. M., van Dooijeweert, W., Diaz Trivino, S., de Haan, J. R., Sanchez Perez, G. F., Zhang, X., Fransz, P., de Jong, J. H. S. G. M., van Dijk, A. D. J., de Ridder, D. & Peters, S. A., May 2020, In : The Plant Journal. 102, 3, p. 480-492

Research output: Contribution to journalArticleAcademicpeer-review

2019

Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards

Lind, A. L., Lai, Y. Y. Y., Mostovoy, Y., Holloway, A. K., Iannucci, A., Mak, A. C. Y., Fondi, M., Orlandini, V., Eckalbar, W. L., Milan, M., Rovatsos, M., Kichigin, I. G., Makunin, A. I., Johnson Pokorná, M., Altmanová, M., Trifonov, V. A., Schijlen, E., Kratochvíl, L., Fani, R., Velenský, P. & 10 others, Rehák, I., Patarnello, T., Jessop, T. S., Hicks, J. W., Ryder, O. A., Mendelson, J. R., Ciofi, C., Kwok, P. Y., Pollard, K. S. & Bruneau, B. G., 29 Jul 2019, In : Nature Ecology and Evolution. 3, 8, p. 1241-1252

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Identification of Loci Associated with Enhanced Virulence in Spodoptera litura Nucleopolyhedrovirus Isolates Using Deep Sequencing

Zwart, M. P., Ali, G., van Strien, E. A., Schijlen, E. G. W. M., Wang, M., van der Werf, W. & Vlak, J. M., 17 Sep 2019, In : Viruses. 11, 9, 872.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Pseudo-chromosome-length genome assembly of a double haploid "Bartlett" pear (Pyrus communis L.)

Linsmith, G., Rombauts, S., Montanari, S., Deng, C. H., Celton, J. M., Guérif, P., Liu, C., Lohaus, R., Zurn, J. D., Cestaro, A., Bassil, N. V., Bakker, L. V., Schijlen, E., Gardiner, S. E., Lespinasse, Y., Durel, C. E., Velasco, R., Neale, D. B., Chagné, D., Van de Peer, Y. & 2 others, Troggio, M. & Bianco, L., Dec 2019, In : GigaScience. 8, 12, giz138.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Tissue specific expression and genomic organization of bitter sesquiterpene lactone biosynthesis in Cichorium intybus L. (Asteraceae)

Bogdanovic, M., Cankar, K., Todorovic, S., Dragicevic, M., Simonovic, A., van Houwelingen, A. M. M. L., Schijlen, E. G. W. M., Schipper, A., Gagneul, D., Hendriks, T., Quillet, M-C., Bouwmeester, H. J., Bosch, H. J. & Beekwilder, M. J., Mar 2019, In : Industrial Crops and Products. 129, p. 253-260

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)
2018

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

Hibrand Saint-Oyant, L., Ruttink, T., Hamama, L., Kirov, I., Lakhwani, D., Zhou, N. N., Bourke, P. M., Daccord, N., Leus, L., Schulz, D., van de Geest, H., Hesselink, T., Van Laere, K., Debray, K., Balzergue, S., Thouroude, T., Chastellier, A., Jeauffre, J., Voisine, L., Gaillard, S. & 21 others, Borm, T. J. A., Arens, P., Voorrips, R. E., Maliepaard, C., Neu, E., Linde, M., Le Paslier, M. C., Bérard, A., Bounon, R., Clotault, J., Choisne, N., Quesneville, H., Kawamura, K., Aubourg, S., Sakr, S., Smulders, M. J. M., Schijlen, E., Bucher, E., Debener, T., De Riek, J. & Foucher, F., 2018, In : Nature Plants. 4, p. 473-484

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
40 Citations (Scopus)

Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

van Velzen, R., Holmer, R., Bu, F., Rutten, L. J. J., van Zeijl, A. L., Liu, W., Santuari, L., Cao, Q., Sharma, T., Shen, D., Purwana Roswanjaya, Y., Wardhani, T., Seifi Kalhor, M., Jansen, J., van den Hoogen, D. J., Güngör, B., Hartog, M. V., Hontelez, J., Verver, J., Yang, W-C. & 11 others, Schijlen, E. G. W. M., Repin, R., Schilthuizen, M., Schranz, M. E., Heidstra, R., Miyata, K., Fedorova, E., Kohlen, W., Bisseling, A. H. J., Smit, S. & Geurts, R., 15 May 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 20, p. E4700-E4709

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
51 Citations (Scopus)

Correcting palindromes in long reads after whole-genome amplification

Warris, S., Schijlen, E. G. W. M., van de Geest, H. C., Vegesna, R., Hesselink, T., te Lintel Hekkert, B., Sanchez Perez, G. F., Medvedev, P., Makova, K. D. & de Ridder, D., 6 Nov 2018, In : BMC Genomics. 19, 798.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Host- and stage-dependent secretome of the arbuscular mycorrhizal fungus Rhizophagus irregularis

Zeng, T., Holmer, R., Hontelez, J., te Lintel-Hekkert, B., Marufu, L., de Zeeuw, T., Wu, F., Schijlen, E., Bisseling, T. & Limpens, E., May 2018, In : The Plant Journal. 94, 3, p. 411-425

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
20 Citations (Scopus)

Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity

Mommer, L., Cotton, A., Raaijmakers, J. M., Termorshuizen, A. J., van Ruijven, J., Hendriks, M., van Rijssel, S., van de Mortel, J. E., van der Paauw, J. W. M., Schijlen, E. G. W. M., Smit-Tiekstra, A., Berendse, F., de Kroon, H. & Dumbrell, A. J., Apr 2018, In : New Phytologist. 218, 2, p. 542-553

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
35 Citations (Scopus)

The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization

Nishiyama, T., Sakayama, H., de Vries, J., Buschmann, H., Saint-Marcoux, D., Ullrich, K. K., Haas, F. B., Vanderstraeten, L., Becker, D., Lang, D., Vosolsobě, S., Rombauts, S., Wilhelmsson, P. K. I., Janitza, P., Kern, R., Heyl, A., Rümpler, F., Villalobos, L. I. A. C., Clay, J. M., Skokan, R. & 40 others, Toyoda, A., Suzuki, Y., Kagoshima, H., Schijlen, E., Tajeshwar, N., Catarino, B., Hetherington, A. J., Saltykova, A., Bonnot, C., Breuninger, H., Symeonidi, A., Radhakrishnan, G. V., Van Nieuwerburgh, F., Deforce, D., Chang, C., Karol, K. G., Hedrich, R., Ulvskov, P., Glöckner, G., Delwiche, C. F., Petrášek, J., Van de Peer, Y., Friml, J., Beilby, M., Dolan, L., Kohara, Y., Sugano, S., Fujiyama, A., Delaux, P. M., Quint, M., Theißen, G., Hagemann, M., Harholt, J., Dunand, C., Zachgo, S., Langdale, J., Maumus, F., Van Der Straeten, D., Gould, S. B. & Rensing, S. A., 12 Jul 2018, In : Cell. 174, 2, p. 448-464.e24

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
68 Citations (Scopus)
2017

A footprint of desiccation tolerance in the genome of Xerophyta viscosa

Dias Costa, M. C., Silva Artur, M. A., Maia de Oliveira, J., Jonkheer, E., Derks, M., Nijveen, H., Williams, B., Mundree, S., Jiménez-Gómez, J. M., Hesselink, T., Schijlen, E. G. W. M., Ligterink, W., Oliver, M. J., Farrant, J. M. & Hilhorst, H. W. M., 27 Mar 2017, In : Nature Plants. 3, 10 p., 17038.

Research output: Contribution to journalArticleAcademicpeer-review

46 Citations (Scopus)

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

Daccord, N., Celton, J-M., Linsmith, G., Becker, C., Choisne, N., Schijlen, E., van de Geest, H., Bianco, L., Micheletti, D., Velasco, R., Di Pierro, E. A., Gouzy, J., Rees, D. J. G., Guérif, P., Muranty, H., Durel, C. E., Laurens, F., Lespinasse, Y., Gaillard, S., Aubourg, S. & 5 others, Quesneville, H., Weigel, D., van de Weg, E., Troggio, M. & Bucher, E., 2017, In : Nature Genetics. 49, 7, p. 1099-1106

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
184 Citations (Scopus)

Re-sequencing transgenic plants revealed rearrangements at T-DNA inserts, and integration of a short T-DNA fragment, but no increase of small mutations elsewhere

Schouten, H. J., van de Geest, H., Papadimitriou, S., Bemer, M., Schaart, J. G., Smulders, R., Perez, G. S. & Schijlen, E., Mar 2017, In : Plant Cell Reports. 36, 3, p. 493-504

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
17 Citations (Scopus)

The genome of Chenopodium quinoa

Jarvis, D. E., Shwen Ho, Y., Lightfoot, D. J., Schmöckel, S. M., Li, B., Borm, T. J. A., Ohyanagi, H., Mineta, K., Mitchell, C. T., Saber, N., Kharbatia, N. M., Rupper, R. R., Sharp, A. R., Dally, N., Boughton, B. A., Woo, Y. H., Gao, G., Schijlen, E. G. W. M., Guo, X., Momin, A. A. & 13 others, Negräo, S., Al-Babili, S., Gehring, C., Roessner, U., Jung, C., Murphy, K., Arold, S. T., Gojobori, T., van der Linden, C. G., van Loo, E. N., Jellen, E. N., Maughan, P. J. & Tester, M., 16 Feb 2017, In : Nature. 542, 7641, p. 307-312

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
161 Citations (Scopus)
2016

A detailed analysis of the recombination landscape of the button mushroom Agaricus bisporus var. bisporus

Sonnenberg, A. S. M., Gao, W., Lavrijssen, B., Hendrickx, P., Sedaghat-Tellgerd, N., Foulongne-Oriol, M., Kong, W-S., Schijlen, E. G. W. M., Baars, J. J. P. & Visser, R. G. F., 2016, In : Fungal Genetics and Biology. 93, p. 35-45

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
22 Citations (Scopus)

Gene and transposable element methylation in great tit (Parus major) brain and blood

Derks, M. F. L., Schachtschneider, K. M., Madsen, O., Schijlen, E. G. W. M., Verhoeven, K. J. F. & van Oers, K., 2016, In : BMC Genomics. 17, 332.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
17 Citations (Scopus)

Living apart together: Crosstalk between the core and supernumerary genomes in a fungal plant pathogen

Vanheule, A., Audenaert, K., Warris, S., van de Geest, H., Schijlen, E., Höfte, M., De Saeger, S., Haesaert, G., Waalwijk, C. & van der Lee, T., 2016, In : BMC Genomics. 17, 18 p., 670.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
21 Citations (Scopus)
2015

Differentially expressed genes linked to natural variation in long-term memory formation in Cotesia parasitic wasps

van Vugt, J. J. F. A., Hoedjes, K. M., van de Geest, H. C., Schijlen, E. G. W. M., Vet, L. E. M. & Smid, H. M., 2015, In : Frontiers in Behavioral Neuroscience. 9, 17 p., 255.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Learning-induced gene expression in the heads of two Nasonia species that differ in long-term memory formation

Hoedjes, K. M., Smid, H. M., Schijlen, E. G. W. M., Vet, L. E. M. & van Vugt, J. J. F. A., 2015, In : BMC Genomics. 16, 162.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
13 Citations (Scopus)

Living apart together: crosstalk between the core and supernumerary genomes in Fusarium poae

Vanheule, A., Audenaert, K., Warris, S., van de Geest, H. C., Schijlen, E. G. W. M., Höfte, M., de Saeger, S., Haesaert, G., Waalwijk, C. & van der Lee, T. A. J., 2015, In : Gewasbescherming. 46, 5, p. 154-154

Research output: Contribution to journalArticleProfessional

Open Access
Open Access
37 Citations (Scopus)
2014

A comprehensive set of transcript sequences of the heavy metal hyperaccumulator Noccaea caerulescens

Lin, Y. F., Severing, E. I., te Lintel Hekkert, B., Schijlen, E. G. W. M. & Aarts, M. G. M., 2014, In : Frontiers in Plant Science. 5, 15 p., 261.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
19 Citations (Scopus)
157 Citations (Scopus)

The genome of the stress-tolerant wild tomato species Solanum pennellii

Bolger, A., Scossa, F., Bolger, M. E., Aflitos, S. A., Schijlen, E. G. W. M., van Ham, R. C. H. J. & Klein Lankhorst, R. M., 2014, In : Nature Genetics. 46, 9, p. 1034-1038

Research output: Contribution to journalArticleAcademicpeer-review

161 Citations (Scopus)
2012

The tomato genome sequence provides insights into fleshy fruit evolution

Sato, S., Tabata, S., Hirakawa, H., Klein Lankhorst, R. M., de Jong, H., van Ham, R. C. H. J., Datema, E., Smit, S., Schijlen, E. G. W. M., van Haarst, J. C., Peters, S. A., Henkens, M. H. C., van Staveren, M. J., Mooijman, P. J. W., Hesselink, T., van de Belt, J., Szinay, D., Bai, Y. & Visser, R. G. F., 2012, In : Nature. 485, p. 635-641

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1632 Citations (Scopus)

Tomaat, tomater, tomaatst

Klein Lankhorst, R. M. & Schijlen, E. G. W. M., 2012, In : De Volkskrant. p. 7-8 2 p.

Research output: Contribution to journalArticlePopular

Vliegensvlug door het DNA

Schijlen, E. G. W. M., 2012, In : WageningenWorld. 1, 2 p.

Research output: Contribution to journalArticleProfessional

Open Access
2009

Solanum lycopersicum cv. Heinz 1706 chromosome 6: distribution and abundance of genes and retrotransposable elements

Peters, S. A., Datema, E., Szinay, D., van Staveren, M. J., Schijlen, E. G. W. M., van Haarst, J. C., Hesselink, T., Abma-Henkens, M. H. C., Bai, Y., de Jong, J. H., Stiekema, W., Klein Lankhorst, R. M. & van Ham, R. C. H. J., 2009, In : The Plant Journal. 58, 5, p. 857-869

Research output: Contribution to journalArticleAcademicpeer-review

21 Citations (Scopus)
2008

Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors

Butelli, E., Titta, L., Giorgio, M., Mock, H. P., Matros, A., Peterek, S., Schijlen, E. G. W. M., Hall, R. D., Bovy, A. G., Luo, J. & Martin, C., 2008, In : Nature Biotechnology. 26, 11, p. 1301-1308

Research output: Contribution to journalArticleAcademicpeer-review

645 Citations (Scopus)

High-resolution chromosome mapping of BACs using multi-colour FISH and pooled-BAC FISH as a backbone for sequencing tomato chromosome 6

Szinay, D., Chang, S. B., Khrustaleva, L. I., Peters, S. A., Schijlen, E. G. W. M., Bai, Y., Stiekema, W., van Ham, R. C. H. J., de Jong, H. & Klein Lankhorst, R. M., 2008, In : The Plant Journal. 56, 4, p. 627-637

Research output: Contribution to journalArticleAcademicpeer-review

63 Citations (Scopus)
2007

Metabolic engineering of flavonoids in tomato (Solanum lycopersicum): the potential for metabolomics

Bovy, A. G., Schijlen, E. G. W. M. & Hall, R. D., 2007, In : Metabolomics. 3, 3, p. 399-412

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
109 Citations (Scopus)

RNA interference silencing of chalcone synthase, the first step in the flavonoid biosynthesis pathway, leads to parthenocarpic tomato fruits

Schijlen, E. G. W. M., de Vos, C. H., Martens, S., Jonker, H. H., Rosin, F. M. A., Molthoff, J. W., Tikunov, Y. M., Angenent, G. C., van Tunen, A. J. & Bovy, A. G., 2007, In : Plant Physiology. 144, 3, p. 1520-1530

Research output: Contribution to journalArticleAcademicpeer-review

157 Citations (Scopus)
2006

Pathway engineering for healthy phytochemicals leading to the production of novel flavonoids in tomato fruit

Schijlen, E. G. W. M., de Vos, C. H., Jonker, H. H., van den Broeck, H. C., Molthoff, J. W., van Tunen, A. J., Martens, S. & Bovy, A. G., 2006, In : Plant Biotechnology Journal. 4, 4, p. 433-444

Research output: Contribution to journalArticleAcademicpeer-review

115 Citations (Scopus)

Transgenic flavonoid tomato intake reduces C-reactive protein in human C-reactive protein transgenic mice more than wild-type tomato

Rein, D., Schijlen, E. G. W. M., Kooistra, T., Herbers, K., Verschuren, L., Hall, R. D., Sonnewald, U., Bovy, A. G. & Kleemann, R., Sep 2006, In : The Journal of Nutrition. 136, 9, p. 2331-2337

Research output: Contribution to journalArticleAcademicpeer-review

58 Citations (Scopus)
2004

Modification of flavonoid biosynthesis in crop plants

Schijlen, E. G. W. M., de Vos, C. H., van Tunen, A. J. & Bovy, A. G., 2004, In : Phytochemistry. 65, 19, p. 2631-2648

Research output: Contribution to journalArticleAcademicpeer-review

277 Citations (Scopus)
2003

Effect of diets fortified with tomatoes or onions with variable quercetin-glycoside content on azoxymethane-induced aberrant crypt foci in the colon of rats

Femia, A. P., Caderni, G., Ianni, M., Salvadori, M., Schijlen, E. G. W. M., Collins, G., Bovy, A. G. & Dolara, P., 2003, In : European Journal of Nutrition. 42, 6, p. 346-352

Research output: Contribution to journalArticleAcademicpeer-review

25 Citations (Scopus)