Elena del Pup

Elena del Pup, MSc

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    • 2 Article
    • 2 Literature review

    • MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

      Zdouc, M. M., Blin, K., Louwen, N. L. L., Navarro, J., Loureiro, C., Bader, C. D., Bailey, C. B., Barra, L., Booth, T. J., Bozhüyük, K. A. J., Cediel-Becerra, J. D. D., Charlop-Powers, Z., Chevrette, M. G., Chooi, Y. H., D’Agostino, P. M., de Rond, T., Pup, E. D., Duncan, K. R., Gu, W. & Hanif, N. & 268 others, Helfrich, E., Jenner, M., Katsuyama, Y., Korenskaia, A., Krug, D., Libis, V., Lund, G. A., Mantri, S., Morgan, K. D., Owen, C., Phan, C. S., Philmus, B., Reitz, Z., Robinson, S. L., Singh, K. S., Teufel, R., Tong, Y., Tugizimana, F., Ulanova, D., Winter, J., Aguilar, C., Akiyama, D. Y., Al-Salihi, S., Alanjary, M., Alberti, F., Aleti, G., Alharthi, S. A., Arias Rojo, M. Y., Arishi, A., Augustijn, H. E., Avalon, N. E., Avelar-Rivas, A., Axt, K. K., Barbieri, H. B., Barbosa, J. C. J., Segato, L. G. B., Barrett, S. E., Baunach, M., Beemelmanns, C., Beqaj, D., Berger, T., Bernaldo-Agüero, J., Bettenbühl, S. M., Bielinski, V. A., Biermann, F., Borges, R. M., Borriss, R., Breitenbach, M., Bretscher, K. M., Brigham, M. W., Buedenbender, L., Bulcock, B. W., Cano-Prieto, C., Capela, J., Carrion, V. J., Carter, R. S., Castelo-Branco, R., Castro-Falcón, G., Chagas, F. O., Charria-Girón, E., Chaudhri, A. A., Chaudhry, V., Choi, H., Choi, Y., Choupannejad, R., Chromy, J., Chue Donahey, M. S., Collemare, J., Connolly, J. A., Creamer, K. E., Crüsemann, M., Cruz, A. A., Cumsille, A., Dallery, J. F., Damas-Ramos, L. C., Damiani, T., de Kruijff, M., Martín, B. D., Sala, G. D., Dillen, J., Doering, D. T., Dommaraju, S. R., Durusu, S., Egbert, S., Ellerhorst, M., Faussurier, B., Fetter, A., Feuermann, M., Fewer, D. P., Foldi, J., Frediansyah, A., Garza, E. A., Gavriilidou, A., Gentile, A., Gerke, J., Gerstmans, H., Gomez-Escribano, J. P., González-Salazar, L. A., Grayson, N. E., Greco, C., Gris Gomez, J. E., Guerra, S., Flores, S. G., Gurevich, A., Gutiérrez-García, K., Hart, L., Haslinger, K., He, B., Hebra, T., Hemmann, J. L., Hindra, H., Höing, L., Holland, D. C., Holme, J. E., Horch, T., Hrab, P., Hu, J., Huynh, T. H., Hwang, J. Y., Iacovelli, R., Iftime, D., Iorio, M., Jayachandran, S., Jeong, E., Jing, J., Jung, J. J., Kakumu, Y., Kalkreuter, E., Kang, K. B., Kang, S., Kim, W., Kim, G. J., Kim, H., Kim, H. U., Klapper, M., Koetsier, R. A., Kollten, C., Kovács, Á. T., Kriukova, Y., Kubach, N., Kunjapur, A. M., Kushnareva, A. K., Kust, A., Lamber, J., Larralde, M., Larsen, N. J., Launay, A. P., Le, N. T. H., Lebeer, S., Lee, B. T., Lee, K., Lev, K. L., Li, S. M., Li, Y. X., Licona-Cassani, C., Lien, A., Liu, J., Lopez, J. A. V., Machushynets, N. V., Macias, M. I., Mahmud, T., Maleckis, M., Martinez-Martinez, A. M., Mast, Y., Maximo, M. F., McBride, C. M., McLellan, R. M., Bhatt, K. M., Melkonian, C., Merrild, A., Metsä-Ketelä, M., Mitchell, D. A., Müller, A. V., Nguyen, G. S., Nguyen, H. T., Niedermeyer, T. H. J., O’Hare, J. H., Ossowicki, A., Ostash, B. O., Otani, H., Padva, L., Paliyal, S., Pan, X., Panghal, M., Parade, D. S., Park, J., Parra, J., Rubio, M. P., Pham, H. T., Pidot, S. J., Piel, J., Pourmohsenin, B., Rakhmanov, M., Ramesh, S., Rasmussen, M. H., Rego, A., Reher, R., Rice, A. J., Rigolet, A., Romero-Otero, A., Rosas-Becerra, L. R., Rosiles, P. Y., Rutz, A., Ryu, B., Sahadeo, L. A., Saldanha, M., Salvi, L., Sánchez-Carvajal, E., Santos-Medellin, C., Sbaraini, N., Schoellhorn, S. M., Schumm, C., Sehnal, L., Selem, N., Shah, A. D., Shishido, T. K., Sieber, S., Silviani, V., Singh, G., Singh, H., Sokolova, N., Sonnenschein, E. C., Sosio, M., Sowa, S. T., Steffen, K., Stegmann, E., Streiff, A. B., Strüder, A., Surup, F., Svenningsen, T., Sweeney, D., Szenei, J., Tagirdzhanov, A., Tan, B., Tarnowski, M. J., Terlouw, B. R., Rey, T., Thome, N. U., Ortega, L. R. T., Tørring, T., Trindade, M., Truman, A. W., Tvilum, M., Udwary, D. W., Ulbricht, C., Vader, L., van Wezel, G. P., Walmsley, M., Warnasinghe, R., Weddeling, H. G., Weir, A. N. M., Williams, K., Williams, S. E., Witte, T. E., Wood Rocca, S. M., Yamada, K., Yang, D., Yang, D., Yu, J., Zhou, Z., Ziemert, N., Zimmer, L., Zimmermann, A., Zimmermann, C., van der Hooft, J. J. J., Linington, R. G., Weber, T. & Medema, M. H., 6 Jan 2025, In: Nucleic acids research. 53, D1, 13 p.

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access
      17 Citations (Scopus)

    • Allelic variation in the autotetraploid potato: genes involved in starch and steroidal glycoalkaloid metabolism as a case study

      Li, H., Brouwer, M., Pup, E. D., van Lieshout, N., Finkers, R., Bachem, C. W. B. & Visser, R. G. F., 12 Mar 2024, In: BMC Genomics. 25, 274.

      Research output: Contribution to journal › Article › Academic › peer-review

      Open Access
      4 Citations (Scopus)

    • Effective data visualization strategies in untargeted metabolomics

      Mildau, K., Ehlers, H., Meisenburg, M., Del Pup, E., Koetsier, R. A., Torres Ortega, L. R., de Jonge, N. F., Singh, K. S., Ferreira, D., Othibeng, K., Tugizimana, F., Huber, F. & van der Hooft, J. J. J., 2 Dec 2024, (E-pub ahead of print) In: Natural Product Reports. 38 p.

      Research output: Contribution to journal › Literature review › peer-review

      Open Access

    • Pairing omics to decode the diversity of plant specialized metabolism

      Wolters, F. C., Del Pup, E., Singh, K. S., Bouwmeester, K., Schranz, E., van der Hooft, J. J. J. & Medema, M. H., Dec 2024, In: Current Opinion in Plant Biology. 82, 9 p., 102657.

      Research output: Contribution to journal › Literature review › peer-review

      Open Access
      1 Citation (Scopus)

    • Genomic basis of divergence of modern cultivated potatoes

      Li, H. (Creator), Brouwer, M. (Creator), Pup, E. D. (Creator), van Lieshout, N. (Creator), Finkers, R. (Creator), Bachem, C. W. B. (Creator) & Visser, R. G. F. (Creator), Wageningen University & Research, 14 Mar 2023

      https://www.ncbi.nlm.nih.gov/bioproject/944441

      Dataset

    • The Minimum Information about a Biosynthetic Gene Cluster (MIBiG) data repository

      Zdouc, M. M. (Creator), Blin, K. (Creator), Louwen, N. L. L. (Creator), Navarro, J. (Creator), Loureiro, C. (Creator), Bader, C. D. (Creator), Bailey, C. B. (Creator), Barra, L. (Creator), Booth, T. J. (Creator), Bozhüyük, K. A. J. (Creator), Cediel-Becerra, J. D. D. (Creator), Charlop-Powers, Z. (Creator), Chevrette, M. G. (Creator), Chooi, Y. H. (Creator), D’Agostino, P. M. (Creator), de Rond, T. (Creator), Pup, E. D. (Creator), Duncan, K. R. (Creator), Gu, W. (Creator), Hanif, N. (Creator), Helfrich, E. (Creator), Jenner, M. (Creator), Katsuyama, Y. (Creator), Korenskaia, A. (Creator), Krug, D. (Creator), Libis, V. (Creator), Lund, G. A. (Creator), Mantri, S. (Creator), Morgan, K. D. (Creator), Owen, C. (Creator), Phan, C. S. (Creator), Philmus, B. (Creator), Reitz, Z. (Creator), Robinson, S. L. (Creator), Singh, K. S. (Creator), Teufel, R. (Creator), Tong, Y. (Creator), Tugizimana, F. (Creator), Ulanova, D. (Creator), Winter, J. (Creator), Aguilar, C. (Creator), Akiyama, D. Y. (Creator), Al-Salihi, S. (Creator), Alanjary, M. (Creator), Alberti, F. (Creator), Aleti, G. (Creator), Alharthi, S. A. (Creator), Arias Rojo, M. Y. (Creator), Arishi, A. (Creator), Augustijn, H. E. (Creator), Avalon, N. E. (Creator), Avelar-Rivas, A. (Creator), Axt, K. K. (Creator), Barbieri, H. B. (Creator), Barbosa, J. C. J. (Creator), Segato, L. G. B. (Creator), Barrett, S. E. (Creator), Baunach, M. (Creator), Beemelmanns, C. (Creator), Beqaj, D. (Creator), Berger, T. (Creator), Bernaldo-Agüero, J. (Creator), Bettenbühl, S. M. (Creator), Bielinski, V. A. (Creator), Biermann, F. (Creator), Borges, R. M. (Creator), Borriss, R. (Creator), Breitenbach, M. (Creator), Bretscher, K. M. (Creator), Brigham, M. W. (Creator), Buedenbender, L. (Creator), Bulcock, B. W. (Creator), Cano-Prieto, C. (Creator), Capela, J. (Creator), Carrion, V. J. (Creator), Carter, R. S. (Creator), Castelo-Branco, R. (Creator), Castro-Falcón, G. (Creator), Chagas, F. O. (Creator), Charria-Girón, E. (Creator), Chaudhri, A. A. (Creator), Chaudhry, V. (Creator), Choi, H. (Creator), Choi, Y. (Creator), Choupannejad, R. (Creator), Chromy, J. (Creator), Chue Donahey, M. S. (Creator), Collemare, J. (Creator), Connolly, J. A. (Creator), Creamer, K. E. (Creator), Crüsemann, M. (Creator), Cruz, A. A. (Creator), Cumsille, A. (Creator), Dallery, J. F. (Creator), Damas-Ramos, L. C. (Creator), Damiani, T. (Creator), de Kruijff, M. (Creator), Martín, B. D. (Creator), Sala, G. D. (Creator), Dillen, J. (Creator), Doering, D. T. (Creator), Dommaraju, S. R. (Creator), Durusu, S. (Creator), Egbert, S. (Creator), Ellerhorst, M. (Creator), Faussurier, B. (Creator), Fetter, A. (Creator), Feuermann, M. (Creator), Fewer, D. P. (Creator), Foldi, J. (Creator), Frediansyah, A. (Creator), Garza, E. A. (Creator), Gavriilidou, A. (Creator), Gentile, A. (Creator), Gerke, J. (Creator), Gerstmans, H. (Creator), Gomez-Escribano, J. P. (Creator), González-Salazar, L. A. (Creator), Grayson, N. E. (Creator), Greco, C. (Creator), Gris Gomez, J. E. (Creator), Guerra, S. (Creator), Flores, S. G. (Creator), Gurevich, A. (Creator), Gutiérrez-García, K. (Creator), Hart, L. (Creator), Haslinger, K. (Creator), He, B. (Creator), Hebra, T. (Creator), Hemmann, J. L. (Creator), Hindra, H. (Creator), Höing, L. (Creator), Holland, D. C. (Creator), Holme, J. E. (Creator), Horch, T. (Creator), Hrab, P. (Creator), Hu, J. (Creator), Huynh, T. H. (Creator), Hwang, J. Y. (Creator), Iacovelli, R. (Creator), Iftime, D. (Creator), Iorio, M. (Creator), Jayachandran, S. (Creator), Jeong, E. (Creator), Jing, J. (Creator), Jung, J. J. (Creator), Kakumu, Y. (Creator), Kalkreuter, E. (Creator), Kang, K. B. (Creator), Kang, S. (Creator), Kim, W. (Creator), Kim, G. J. (Creator), Kim, H. (Creator), Kim, H. U. (Creator), Klapper, M. (Creator), Koetsier, R. A. (Creator), Kollten, C. (Creator), Kovács, Á. T. (Creator), Kriukova, Y. (Creator), Kubach, N. (Creator), Kunjapur, A. M. (Creator), Kushnareva, A. K. (Creator), Kust, A. (Creator), Lamber, J. (Creator), Larralde, M. (Creator), Larsen, N. J. (Creator), Launay, A. P. (Creator), Le, N. T. H. (Creator), Lebeer, S. (Creator), Lee, B. T. (Creator), Lee, K. (Creator), Lev, K. L. (Creator), Li, S. M. (Creator), Li, Y. X. (Creator), Licona-Cassani, C. (Creator), Lien, A. (Creator), Liu, J. (Creator), Lopez, J. A. V. (Creator), Machushynets, N. V. (Creator), Macias, M. I. (Creator), Mahmud, T. (Creator), Maleckis, M. (Creator), Martinez-Martinez, A. M. (Creator), Mast, Y. (Creator), Maximo, M. F. (Creator), McBride, C. M. (Creator), McLellan, R. M. (Creator), Bhatt, K. M. (Creator), Melkonian, C. (Creator), Merrild, A. (Creator), Metsä-Ketelä, M. (Creator), Mitchell, D. A. (Creator), Müller, A. V. (Creator), Nguyen, G. S. (Creator), Nguyen, H. T. (Creator), Niedermeyer, T. H. J. (Creator), O’Hare, J. H. (Creator), Ossowicki, A. (Creator), Ostash, B. O. (Creator), Otani, H. (Creator), Padva, L. (Creator), Paliyal, S. (Creator), Pan, X. (Creator), Panghal, M. (Creator), Parade, D. S. (Creator), Park, J. (Creator), Parra, J. (Creator), Rubio, M. P. (Creator), Pham, H. T. (Creator), Pidot, S. J. (Creator), Piel, J. (Creator), Pourmohsenin, B. (Creator), Rakhmanov, M. (Creator), Ramesh, S. (Creator), Rasmussen, M. H. (Creator), Rego, A. (Creator), Reher, R. (Creator), Rice, A. J. (Creator), Rigolet, A. (Creator), Romero-Otero, A. (Creator), Rosas-Becerra, L. R. (Creator), Rosiles, P. Y. (Creator), Rutz, A. (Creator), Ryu, B. (Creator), Sahadeo, L. A. (Creator), Saldanha, M. (Creator), Salvi, L. (Creator), Sánchez-Carvajal, E. (Creator), Santos-Medellin, C. (Creator), Sbaraini, N. (Creator), Schoellhorn, S. M. (Creator), Schumm, C. (Creator), Sehnal, L. (Creator), Selem, N. (Creator), Shah, A. D. (Creator), Shishido, T. K. (Creator), Sieber, S. (Creator), Silviani, V. (Creator), Singh, G. (Creator), Singh, H. (Creator), Sokolova, N. (Creator), Sonnenschein, E. C. (Creator), Sosio, M. (Creator), Sowa, S. T. (Creator), Steffen, K. (Creator), Stegmann, E. (Creator), Streiff, A. B. (Creator), Strüder, A. (Creator), Surup, F. (Creator), Svenningsen, T. (Creator), Sweeney, D. (Creator), Szenei, J. (Creator), Tagirdzhanov, A. (Creator), Tan, B. (Creator), Tarnowski, M. J. (Creator), Terlouw, B. R. (Creator), Rey, T. (Creator), Thome, N. U. (Creator), Ortega, L. R. T. (Creator), Tørring, T. (Creator), Trindade, M. (Creator), Truman, A. W. (Creator), Tvilum, M. (Creator), Udwary, D. W. (Creator), Ulbricht, C. (Creator), Vader, L. (Creator), van Wezel, G. P. (Creator), Walmsley, M. (Creator), Warnasinghe, R. (Creator), Weddeling, H. G. (Creator), Weir, A. N. M. (Creator), Williams, K. (Creator), Williams, S. E. (Creator), Witte, T. E. (Creator), Wood Rocca, S. M. (Creator), Yamada, K. (Creator), Yang, D. (Creator), Yang, D. (Creator), Yu, J. (Creator), Zhou, Z. (Creator), Ziemert, N. (Creator), Zimmer, L. (Creator), Zimmermann, A. (Creator), Zimmermann, C. (Creator), van der Hooft, J. J. J. (Creator), Linington, R. G. (Creator), Weber, T. (Creator) & Medema, M. H. (Creator), Wageningen University & Research, 15 Nov 2024

      DOI: 10.5281/zenodo.13367755

      Dataset