Research output per year
Research output per year
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Dive into the research topics where Eef Jonkheer is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
- 1 Similar Profiles
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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An Efficient Triplex TaqMan Quantitative PCR to Detect a Blackleg-Causing Lineage of Pectobacterium brasiliense in Potato Based on a Pangenome Analysis
van der Lee, T. A. J., van Gent-Pelzer, M. P. E., Jonkheer, E. M., Brankovics, B., Houwers, I. M., van der Wolf, J. M., Bonants, P. J. M., van Duivenbode, I., Vreeburg, R. A. M., Nas, M. & Smit, S., 13 Aug 2023, In: Microorganisms. 11, 8, 2080.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
PanVA: Pangenomic Variant Analysis
van den Brandt, A., Jonkheer, E. M., van Workum, D. J. M., van de Wetering, H., Smit, S. & Vilanova, A., 2 Jun 2023, (E-pub ahead of print) In: IEEE Transactions on Visualization and Computer Graphics. p. 1-15 15 p.Research output: Contribution to journal › Article › Academic › peer-review
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PanTools v3: functional annotation, classification and phylogenomics
Jonkheer, E. M., van Workum, F. J. M., Sheikhizadeh Anari, S., Brankovics, B., de Haan, J. R., Berke, L., van der Lee, T. A. J., de Ridder, D. & Smit, S., 15 Sept 2022, In: Bioinformatics. 38, 18, p. 4403-4405Research output: Contribution to journal › Article › Academic › peer-review
Open Access5 Citations (Scopus) -
Visual Exploration of Genetic Sequence Variants in Pangenomes
van den Brandt, A., Jonkheer, E. M., van Workum, F. J. M., Smit, S. & Vilanova, A., 2022.Research output: Contribution to conference › Poster › Academic
Open Access -
The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool
Jonkheer, E. M., Brankovics, B., Houwers, I. M., van der Wolf, J. M., Bonants, P. J. M., Vreeburg, R. A. M., Bollema, R., de Haan, J. R., Berke, L., Smit, S., de Ridder, D. & van der Lee, T. A. J., 14 Apr 2021, In: BMC Genomics. 22, 1, 265.Research output: Contribution to journal › Article › Academic › peer-review
Open Access19 Citations (Scopus)
Datasets
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Pectobacterium genome sequencing for pangenomics
Jonkheer, E. (Creator), Brankovics, B. (Creator), Houwers, I. (Creator), van der Wolf, J. (Creator), Bonants, P. (Creator), Vreeburg, R. A. M. (Creator), Bollema, R. (Creator), de Haan, J. R. (Creator), Berke, L. (Creator), Smit, S. (Creator), de Ridder, D. (Creator) & van der Lee, T. (Creator), Wageningen Plant Research, 28 Jul 2020
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA649220
Dataset
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Data underlying the publication "An Efficient Triplex TaqMan Quantitative PCR to Detect a Blackleg-Causing Lineage of Pectobacterium brasiliense in Potato Based on a Pangenome Analysis”
van der Lee, T. (Creator), Jonkheer, E. (Creator), Smit, S. (Creator), van Gent, M. (Creator) & Brankovics, B. (Creator), Wageningen University & Research, 28 Aug 2023
DOI: 10.4121/fb37e29c-b94b-4888-b3c8-db889bf211e2
Dataset
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Data underlying the publication: "PanTools v3: functional annotation, classification, and phylogenomics "
Jonkheer, E. (Creator) & Smit, S. (Creator), Wageningen University & Research, 4 Jul 2022
DOI: 10.4121/19874485
Dataset
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Xerophyta viscosa Genome sequencing and assembly
Dias Costa, M. C. (Creator), Silva Artur, M. (Creator), Maia de Oliveira, J. (Creator), Jonkheer, E. (Creator), Derks, M. (Creator), Nijveen, H. (Creator), Williams, B. (Creator), Mundree, S. (Creator), Jiménez-Gómez, J. M. (Creator), Hesselink, T. (Creator), Schijlen, E. (Creator), Ligterink, W. (Creator), Oliver, M. J. (Creator), Farrant, J. M. (Creator) & Hilhorst, H. (Creator), Wageningen University & Research, 31 Mar 2017
https://www.ncbi.nlm.nih.gov/bioproject/291133
Dataset
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Data underlying the publication: "The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool"
Jonkheer, E. (Creator), Smit, S. (Creator), van der Lee, T. (Creator), Brankovics, B. (Creator), van der Wolf, J. (Creator) & Vreeburg, R. (Creator), Wageningen University & Research, 23 Feb 2021
DOI: 10.4121/14061122
Dataset
Projects
- 1 Active
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Pangenomic applications for plants and pathogens
Jonkheer, E., de Ridder, D., Smit, S. & van der Lee, T.
15/09/18 → …
Project: PhD