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Research Output 2009 2020

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Article
2020

Prediction of nutrient digestibility in grower-finisher pigs based on faecal microbiota composition

Verschuren, L. M. G., Schokker, D., Bergsma, R., Jansman, A. J. M., Molist, F. & Calus, M. P. L., Jan 2020, In : Journal of Animal Breeding and Genetics. 137, 1, p. 23-35

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
feeder pigs
Microbiota
Swine
digestibility
Food
2019
Open Access
Homeostasis
Intestinal Mucosa
Organoids
Intestines
Maintenance

Plasticity of intestinal gene expression profile signatures reflected by nutritional interventions in piglets

Schokker, D., Hulsegge, I., Woelders, H. & Rebel, J. M. J., 23 May 2019, In : BMC Genomics. 20, 1, 414.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Transcriptome
Biological Phenomena
Meta-Analysis
Jejunum
Gene Expression
2018
2 Citations (Scopus)
Open Access
nutritional intervention
Glucans
Fish Oils
Quercetin
glucans
6 Citations (Scopus)

Supplementation of fructooligosaccharides to suckling piglets affects intestinal microbiota colonization and immune development

Schokker, D., Fledderus, J., Jansen, R., Vastenhouw, S. A., de Bree, F. M., Smits, M. A. & Jansman, A. A. J. M., 4 Jun 2018, In : Journal of Animal Science. 96, 6, p. 2139-2153

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
fructooligosaccharides
suckling
intestinal microorganisms
piglets
Microbiota
2 Citations (Scopus)

The repeatability of individual nutrient digestibility in pigs

Ouweltjes, W., Verschuren, L. M. G., Pijlman, J., Bergsma, R., Schokker, D., Knol, E. F., van der Aar, P. J., Molist, F. & Calus, M. P. L., 1 Jan 2018, In : Livestock Science. 207, p. 63-67

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
repeatability
Swine
digestibility
Diet
Food
2017

Amine Metabolism Is Influenced by Dietary Protein Source

Kar, S. K., Jansman, A. J. M., Schokker, D., Kruijt, L., Harms, A. C., Wells, J. M. & Smits, M. A., 1 Sep 2017, In : Frontiers in Nutrition. 4, 41.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
amines
protein sources
dietary protein
blood serum
metabolism
7 Citations (Scopus)

Dietary protein sources differentially affect microbiota, mTOR activity and transcription of mTOR signaling pathways in the small intestine

Kar, S. K., Jansman, A. J. M., Benis, N., Ramiro-Garcia, J., Schokker, D., Kruijt, L., Stolte, E. H., Taverne-Thiele, J. J., Smits, M. A. & Wells, J. M., 1 Nov 2017, In : PLoS ONE. 12, 11, e0188282.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Dietary Proteins
Microbiota
Sirolimus
Transcription
Nutrition
2 Citations (Scopus)

Effects of rye inclusion in grower diets on immune competence-related parameters and performance in broilers

van Krimpen, M. M., Torki, M. & Schokker, D., 2017, In : Poultry Science. 96, 9, p. 3324-3337

Research output: Contribution to journalArticleAcademicpeer-review

grower diets
immunocompetence
rye
broiler chickens
digestive system
2 Citations (Scopus)
Open Access
Intestinal Mucosa
Biological Phenomena
Amoxicillin
Biological Assay
Zinc
2 Citations (Scopus)

Multi-level integration of environmentally perturbed internal phenotypes reveals key points of connectivity between them

Benis, N., Kar, S. K., Martins dos Santos, V. A. P., Smits, M. A., Schokker, D. & Suarez-Diez, M., 2017, In : Frontiers in Physiology. 8, 11 p., 388.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Phenotype
Genotype
Microbiota
Cytokines
Gene Expression
23 Citations (Scopus)

Perturbation of microbiota in one-day old broiler chickens with antibiotic for 24 hours negatively affects intestinal immune development

Schokker, D., Jansman, A. J. M., Veninga, G., de Bruin, N., Vastenhouw, S. A., de Bree, F. M., Bossers, A., Rebel, J. M. J. & Smits, M. A., 2017, In : BMC Genomics. 18, 14 p., 241.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microbiota
Chickens
Anti-Bacterial Agents
Intestinal Mucosa
Jejunum
2 Citations (Scopus)

Study of potential health effects of electromagnetic fields of telephony and Wi-Fi, using chicken embryo development as animal model

Woelders, H., de Wit, A. A. C., Lourens, A., Stockhofe, N., Engel, B., Hulsegge, B., Schokker, D., van Heijningen, P., Vossen, S., Bekers, D. & Zwamborn, P., 2017, In : Bioelectromagnetics. 38, 3, p. 186-203

Research output: Contribution to journalArticleAcademicpeer-review

Electromagnetic Fields
Eggs
Embryonic Development
Chickens
Animal Models
2016
1 Citation (Scopus)

Building pathway graphs from BioPAX data in R

Benis, N., Schokker, D., Kramer, F., Smits, M. & Suarez-Diez, M., 2016, In : F1000 Research. 5, 13 p., 2414.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Information Services
Information Storage and Retrieval
Language
Data structures
Data storage equipment
2015
3 Citations (Scopus)

Association of egg mass and egg sex: gene expression analysis from maternal RNA in the germinal disc region of layer hens (Gallus gallus)

Aslam, M. A., Schokker, D., Groothuis, A. A. G., de Wit, A. A. C., Smits, M. A. & Woelders, H., 2015, In : Biology of Reproduction. 92, 6, 9 p., 157.

Research output: Contribution to journalArticleAcademicpeer-review

Blastodisc
Ovum
Chickens
Sex Ratio
Mothers
38 Citations (Scopus)

Early life microbial colonization of the gut and intestinal development differ between genetically divergent broiler lines

Schokker, D., Veninga, G., Vastenhouw, S. A., Bossers, A., de Bree, F. M., Kaal-Lansbergen, L. M. T. E., Rebel, J. M. J. & Smits, M. A., 2015, In : BMC Genomics. 16, 418.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gastrointestinal Contents
Disease Susceptibility
Livestock
Chickens
Genotype
38 Citations (Scopus)

Long-lasting effects of Early-life Antibiotic Treatment and routine Animal Handling on Gut Microbiota Composition and Immune System in Pigs

Schokker, D., Zhang, J., Vastenhouw, S. A., Heilig, G. H. J., Smidt, H., Rebel, J. M. J. & Smits, M. A., 2015, In : PLoS ONE. 10, 2, e0116523.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
animal handling
Immune system
intestinal microorganisms
Microbiota
immune system
3 Citations (Scopus)

Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets

Benis, N., Schokker, D., Suarez Diez, M., Martins dos Santos, V. A. P., Smidt, H. & Smits, M. A., 2015, In : BMC Genomics. 16, 556.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Biological Phenomena
Gene Expression
Anti-Bacterial Agents
Systems Biology
Health
2014
64 Citations (Scopus)

Early-life environmental variation affects intestinal microbiota and immune development in new-born piglets

Schokker, D. J., Zhang, J., Zhang, L. L., Vastenhouw, S. A., Heilig, H. G. H. J., Smidt, H., Rebel, J. M. J. & Smits, M. A., 2014, In : PLoS ONE. 9, 6, e100040.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
intestinal microorganisms
microbial colonization
piglets
Anti-Bacterial Agents
antibiotics
2013
2 Citations (Scopus)

A mathematical model representing cellular immune development and response to Salmonella of chicken intestinal tissue

Schokker, D., Bannink, A., Smits, M. A. & Rebel, J. M. J., 2013, In : Journal of Theoretical Biology. 330, p. 75-87

Research output: Contribution to journalArticleAcademicpeer-review

Salmonella
Cellular Immunity
Chickens
Theoretical Models
mathematical models
5 Citations (Scopus)

Prioritization of candidate genes for cattle reproductive traits, based on protein-protein interactions, gene expression, and text-mining

Hulsegge, B., Woelders, H., Smits, M. A., Schokker, D., Jiang, L. & Sorensen, P., 2013, In : Physiological genomics. 45, 10, p. 400-406

Research output: Contribution to journalArticleAcademicpeer-review

Data Mining
Hypothalamus
Gene Expression
Amygdala
Genes
2012
10 Citations (Scopus)

Differences in the early response of hatchlings of different chicken breeding lines to Salmonella enterica serovar Enteritidis infection

Schokker, D. J., Peters, T. H. F., Hoekman, A. J. W., Rebel, J. M. J. & Smits, M. A., 2012, In : Poultry Science. 91, 2, p. 346-353

Research output: Contribution to journalArticleAcademicpeer-review

Salmonella Enteritidis
breeding lines
Salmonella
chickens
broiler chickens
9 Citations (Scopus)

Meta-analysis of Chicken - Salmonella infection experiments

te Pas, M. F. W., Hulsegge, B., Schokker, D. J., Smits, M. A., Fife, M., Zoorob, R., Endale, M. L. & Rebel, J. M. J., 2012, In : BMC Genomics. 13, 28 p., 146.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Salmonella Infections
Meta-Analysis
Chickens
Salmonella
Genes
2011
6 Citations (Scopus)

Shift in chicken intestinal gene association networks after infection with Salmonella

Schokker, D. J., De Koning, D. J., Rebel, J. M. J. & Smits, M. A., 2011, In : Comparative Biochemistry and Physiology. D, Genomics and Proteomics. 6, 4, p. 339-347

Research output: Contribution to journalArticleAcademicpeer-review

Salmonella
Salmonella Infections
Gene Regulatory Networks
Chickens
Genes
2010
12 Citations (Scopus)

Effects of Salmonella on spatial-temporal processes of jejunal development in chickens

Schokker, D. J., Smits, M. A., Hoekman, A. J. W., Parmentier, H. K. & Rebel, J. M. J., 2010, In : Developmental and Comparative Immunology. 34, 10, p. 1090-1100

Research output: Contribution to journalArticleAcademicpeer-review

Jejunum
Salmonella
Chickens
Salmonella Infections
Gene Expression
2009
22 Citations (Scopus)

Gene expression patterns associated with chicken jejunal development

Schokker, D. J., Hoekman, A. J. W., Smits, M. A. & Rebel, J. M. J., 2009, In : Developmental and Comparative Immunology. 33, 11, p. 1156-1164

Research output: Contribution to journalArticleAcademicpeer-review

Chickens
Biological Phenomena
Gene Expression
Emigration and Immigration
Multigene Family