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Research Output 2009 2020

2020

Prediction of nutrient digestibility in grower-finisher pigs based on faecal microbiota composition

Verschuren, L. M. G., Schokker, D., Bergsma, R., Jansman, A. J. M., Molist, F. & Calus, M. P. L., Jan 2020, In : Journal of Animal Breeding and Genetics. 137, 1, p. 23-35

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
feeder pigs
Microbiota
Swine
digestibility
Food

Real-Time Visualization of Methane Emission at Commercial Dairy Farms

Schokker, D., Mollenhorst, H., Seigers, G., De Haas, Y., Veerkamp, R. F. & Kamphuis, C., 29 Jan 2020, International Symposium on Environmental Software Systems (ISESS 2020): Environmental Software Systems. Data Science in Action. Wageningen: Springer, p. 194-200 (Environmental Software Systems. Data Science in Action; vol. 554).

Research output: Chapter in Book/Report/Conference proceedingChapter

dairy farming
methane
greenhouses
infrastructure
farms
2019

Effects of milk replacer composition on gut and lung health and performance in veal calves

de Greeff, A., Jansman, A. J. M., Ruuls-van Stalle, E. M. F., Vastenhouw, S. A., Schokker, D., Smits, M. C. J., van der Wal, E., Mölder, P. & Stockhofe, N., 2019, Proceedings of the 17th International Conference on Production Diseases in Farm Animals . Bruckmaier, R. M. & Gross, J. J. (eds.). Bern, Switserland: University of Bern, p. 224-224

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Open Access
Open Access
Homeostasis
Intestinal Mucosa
Organoids
Intestines
Maintenance

Looking at nutrition related traits in pigs through genetic-tinted glasses

Verschuren, L. M. G., Calus, M. P. L., Schokker, D., Bergsma, R., Molist, F. & Jansman, A. J. M., 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic, Vol. 25. p. 257-257 1 p. (Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Microbiability of faecal nutrient digestibility in pigs

Verschuren, L. M. G., Schokker, D., Jansman, A. J. M., Bergsma, R., Molist, F. & Calus, M. P. L., 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic, Vol. 25. p. 306-306 1 p. (Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Plasticity of intestinal gene expression profile signatures reflected by nutritional interventions in piglets

Schokker, D., Hulsegge, I., Woelders, H. & Rebel, J. M. J., 23 May 2019, In : BMC Genomics. 20, 1, 414.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Transcriptome
Biological Phenomena
Meta-Analysis
Jejunum
Gene Expression

Translational pig model for microbiota management and its effects on intestinal health

Bouwens, M., Vastenhouw, S. A., Harders, F. L., Cornelissen, J. B. W. J., van Setten, M. C., Fijten, H. P. D., Schokker, D., Rebel, J. M. J., Bossers, A., Stockhofe, N. & de Greeff, A., 20 May 2019.

Research output: Contribution to conferenceAbstractAcademic

Using a data lake in animal sciences

Schokker, D., Athanasiadis, I. N., Visser, B., Veerkamp, R. F. & Kamphuis, C., Aug 2019, Precision Livestock Farming 2019: Papers Presented at the 9th European Conference on Precision Livestock Farming, ECPLF 2019. O'Brien, B., Hennessy, D. & Shalloo, L. (eds.). p. 140-144 5 p. (Precision Livestock Farming 2019 - Papers Presented at the 9th European Conference on Precision Livestock Farming, ECPLF 2019).

Research output: Chapter in Book/Report/Conference proceedingConference paperAcademicpeer-review

animal science
sensors (equipment)
gait
lakes
video cameras

Using a data lake stack in Animal Sciences

Schokker, D., Athanasiadis, I. N., Visser, B., Veerkamp, R. F. & Kamphuis, C., Aug 2019, p. 140-144. 5 p.

Research output: Contribution to conferenceConference paperAcademic

Open Access
2018
2 Citations (Scopus)

Effect of nutritional interventions with quercetin, oat hulls, β-glucans, lysozyme and fish oil on performance and health status related parameters of broilers chickens

Torki, M., Schokker, D., Duijster-Lensing, M. & van Krimpen, M. M., 2018, In : British Poultry Science. 59, 5, p. 579-590

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
nutritional intervention
Glucans
Fish Oils
Quercetin
glucans
swine housing
immunology
piglets
digestive system
ileum

Faecal microbiome profiles can predict complex traits in pigs

Schokker, D., Verschuren, L., Bergsma, R., Molist, F. & Calus, M. P. L., 27 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 205-2015 1 p. (EAAP Book of Abstracts; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

6 Citations (Scopus)

Supplementation of fructooligosaccharides to suckling piglets affects intestinal microbiota colonization and immune development

Schokker, D., Fledderus, J., Jansen, R., Vastenhouw, S. A., de Bree, F. M., Smits, M. A. & Jansman, A. A. J. M., 4 Jun 2018, In : Journal of Animal Science. 96, 6, p. 2139-2153

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
fructooligosaccharides
suckling
intestinal microorganisms
piglets
Microbiota
2 Citations (Scopus)

The repeatability of individual nutrient digestibility in pigs

Ouweltjes, W., Verschuren, L. M. G., Pijlman, J., Bergsma, R., Schokker, D., Knol, E. F., van der Aar, P. J., Molist, F. & Calus, M. P. L., 1 Jan 2018, In : Livestock Science. 207, p. 63-67

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
repeatability
Swine
digestibility
Diet
Food

Using Data Lake Stack in Animal Sciences

Schokker, D., Athanasiadis, I. N., Visser, B., Veerkamp, R. F. & Kamphuis, C., 12 Dec 2018. 1 p.

Research output: Contribution to conferenceAbstractAcademic

Open Access
2017

Amine Metabolism Is Influenced by Dietary Protein Source

Kar, S. K., Jansman, A. J. M., Schokker, D., Kruijt, L., Harms, A. C., Wells, J. M. & Smits, M. A., 1 Sep 2017, In : Frontiers in Nutrition. 4, 41.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
amines
protein sources
dietary protein
blood serum
metabolism
7 Citations (Scopus)

Dietary protein sources differentially affect microbiota, mTOR activity and transcription of mTOR signaling pathways in the small intestine

Kar, S. K., Jansman, A. J. M., Benis, N., Ramiro-Garcia, J., Schokker, D., Kruijt, L., Stolte, E. H., Taverne-Thiele, J. J., Smits, M. A. & Wells, J. M., 1 Nov 2017, In : PLoS ONE. 12, 11, e0188282.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Dietary Proteins
Microbiota
Sirolimus
Transcription
Nutrition
2 Citations (Scopus)

Effects of rye inclusion in grower diets on immune competence-related parameters and performance in broilers

van Krimpen, M. M., Torki, M. & Schokker, D., 2017, In : Poultry Science. 96, 9, p. 3324-3337

Research output: Contribution to journalArticleAcademicpeer-review

grower diets
immunocompetence
rye
broiler chickens
digestive system

Effects of rye inclusion on immune competence related parameters in broilers

van Krimpen, M. M., Torki, M. & Schokker, D., 8 May 2017, Proceedings of the 21 st European Symposium on Poultry Nutrition : ESPN 2017. Francesch, M., Torrallardona, D. & Brufau, J. (eds.). Wageningen Academic, p. 269-269

Research output: Chapter in Book/Report/Conference proceedingConference paper

2 Citations (Scopus)

Enrichment of in vivo transcription data from dietary intervention studies with in vitro data provides improved insight into gene regulation mechanisms in the intestinal mucosa

Hulst, M., Jansman, A., Wijers, I., Hoekman, A., Vastenhouw, S., Van Krimpen, M., Smits, M. & Schokker, D., 2017, In : Genes & Nutrition. 12, 18 p., 11.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Intestinal Mucosa
Biological Phenomena
Amoxicillin
Biological Assay
Zinc

Gut microbial colonization in day old chicks

Woelders, H., Schokker, D. & Smits, M. A., 2017, In : International Hatchery Practice. 31, 1

Research output: Contribution to journalAbstractProfessional

2 Citations (Scopus)

Multi-level integration of environmentally perturbed internal phenotypes reveals key points of connectivity between them

Benis, N., Kar, S. K., Martins dos Santos, V. A. P., Smits, M. A., Schokker, D. & Suarez-Diez, M., 2017, In : Frontiers in Physiology. 8, 11 p., 388.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Phenotype
Genotype
Microbiota
Cytokines
Gene Expression

Ontwikkeling van een meetlat voor immuuncompetentie in varkens, vleeskuikens en vleeskalveren

Jansman, A., Schokker, D., de Greeff, A., van Krinpen, M., Hulst, M., Rebel, A., Smits, M., Kies, A., Roubos, P., Willems, E., Alderliesten, E. & van der Wal, E., 2017, Wageningen: Wageningen Livestock Research. 48 p. (Wageningen Livestock Research rapport; no. 1097)

Research output: Book/ReportReportProfessional

Open Access
23 Citations (Scopus)

Perturbation of microbiota in one-day old broiler chickens with antibiotic for 24 hours negatively affects intestinal immune development

Schokker, D., Jansman, A. J. M., Veninga, G., de Bruin, N., Vastenhouw, S. A., de Bree, F. M., Bossers, A., Rebel, J. M. J. & Smits, M. A., 2017, In : BMC Genomics. 18, 14 p., 241.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microbiota
Chickens
Anti-Bacterial Agents
Intestinal Mucosa
Jejunum
2 Citations (Scopus)

Study of potential health effects of electromagnetic fields of telephony and Wi-Fi, using chicken embryo development as animal model

Woelders, H., de Wit, A. A. C., Lourens, A., Stockhofe, N., Engel, B., Hulsegge, B., Schokker, D., van Heijningen, P., Vossen, S., Bekers, D. & Zwamborn, P., 2017, In : Bioelectromagnetics. 38, 3, p. 186-203

Research output: Contribution to journalArticleAcademicpeer-review

Electromagnetic Fields
Eggs
Embryonic Development
Chickens
Animal Models
2016
1 Citation (Scopus)

Building pathway graphs from BioPAX data in R

Benis, N., Schokker, D., Kramer, F., Smits, M. & Suarez-Diez, M., 2016, In : F1000 Research. 5, 13 p., 2414.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Information Services
Information Storage and Retrieval
Language
Data structures
Data storage equipment

Delineating spatio-temporal processes in the gut mucosa of pigs

Hulsegge, B., Rebel, J. M. J., Schokker, D. & Smits, M. A., 2016, Book of Abstracts of the 67th Annual Meeting of the European Federation of Animal Science: EAAP – 67th Annual Meeting, Belfast 201. Wageningen: Wageningen Academic Publishers, p. 542-542 (Book of abstracts; no. 22).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Effect of nutritional interventions with quercetin, oat hulls, β-glucans, lysozyme, and fish oil on immune competence related parameters of adult broiler

van Krimpen, M. M., Torki, M., Schokker, D., Lensing, M., Vastenhouw, S., de Bree, F. M., Bossers, A., de Bruijn, N., Jansman, A. J. M., Rebel, J. M. J. & Smits, M. A., Sep 2016, Wageningen: Wageningen Livestock Research. 50 p. (Wageningen Livestock Research report; no. 977)

Research output: Book/ReportReportProfessional

Open Access
nutritional intervention
immunocompetence
glucans
lysozyme
fish oils

Effects of a high level of dietary zinc as model intervention on intestinal microbiota and mucosal gene expression in piglets

Jansman, A. J. M., Schokker, D., Gerritsen, R., de Bree, F., Hulst, M. M. & Smits, M. A., 2016, Wageningen: Wageningen Livestock Research. 37 p. (Wageningen Livestock Research rapport; no. 1000)

Research output: Book/ReportReportProfessional

Open Access

Effects of a high level of dietary zinc over different post weaning periods on intestinal microbiota and mucosal gene expression in piglets

Jansman, A. J. M., Schokker, D., Gerritsen, R., Willems, E., de Bree, F., Dekker, R. A. & Smits, M. A., 2016, Wageningen: Wageningen Livestock Research. 48 p. (Wageningen Livestock Research rapport; no. 1001)

Research output: Book/ReportReportProfessional

Open Access

Effects of dietary protein sources on intestinal and systemic responses of pigs

Kar, S. K., Jansman, A. J. M., Schokker, D., Kruijt, L. & Smits, M. A., 2 Sep 2016, p. 544. 1 p.

Research output: Contribution to conferenceAbstractAcademic

Effects of nutritional interventions on broiler performance, gut microflora and gene expression

van Krimpen, M. M., Torki, M. & Schokker, D., Jun 2016, p. 76. 1 p.

Research output: Contribution to conferencePoster

nutritional intervention
intestinal microorganisms
broiler chickens
gene expression
diet

Effects of rye inclusion in diets on broiler performance, gut morphology and microbiota composition

van Krimpen, M. M., Torki, M., Borgijink, S. M., Schokker, D., Vastenhouw, S. A., de Bree, F. M., Bossers, A., Fabri, T., de Bruijn, N., Jansman, A. J. M., Rebel, J. M. J., Smits, M. A. & van Emous, R. A., 20 Jun 2016, p. 65. 1 p.

Research output: Contribution to conferenceAbstract

rye
digestive system
broiler chickens
diet
digesta

Exploring the gut of 95 weeks old laying hens

Schokker, D., Woelders, H., Visscher, J., Rebel, J. M. J. & Smits, M., 2016.

Research output: Contribution to conferencePosterProfessional

LPS challenge in jonge biggen : VDI-12: effect voerinterventie op biggen

de Greeff, A., Allaart, J., de Bruijn, C., Schokker, D., Roubos, P., Winkelman-Goedhart, H., Vastenhouw, S., Ruuls, L., Rebel, J. & Smits, M., 2016, Wageningen: Wageningen Livestock Research. 21 p. (Wageningen Livestock Research rapport; no. 1009)

Research output: Book/ReportReportProfessional

Open Access

Neonatal development of the gut of broilers is influenced by genetics and management

Schokker, D., Jansman, A. J. M., Smits, M. A. & Rebel, J. M. J., Jun 2016, p. 60. 1 p.

Research output: Contribution to conferenceAbstractAcademic

neonatal development
digestive system
broiler chickens
antibiotics
microbial colonization
2015
3 Citations (Scopus)

Association of egg mass and egg sex: gene expression analysis from maternal RNA in the germinal disc region of layer hens (Gallus gallus)

Aslam, M. A., Schokker, D., Groothuis, A. A. G., de Wit, A. A. C., Smits, M. A. & Woelders, H., 2015, In : Biology of Reproduction. 92, 6, 9 p., 157.

Research output: Contribution to journalArticleAcademicpeer-review

Blastodisc
Ovum
Chickens
Sex Ratio
Mothers

Biological processes induced by ZnO, Amoxicillin, Rye and Fructooligosaccharides in cultured Intestinal Porcine Epithelial Cells : VDI-4; In-vitro tests 2013-2014

Hulst, M. M., Hoekman, A. J. W., Wijers, I., Schokker, D. & Smits, M. A., 2015, Wageningen: Wageningen UR Livestock Research. 42 p. (Livestock Research report; no. 882)

Research output: Book/ReportReportProfessional

amoxicillin
fructooligosaccharides
rye
epithelial cells
feed additives

Data mining of in vitro and in vivo dietary intervention datasets

Schokker, D., Wijers, I. & Hulst, M. M., 2015, Book of Abstracts of the 66th Annual Meeting of the EAAP. Wageningen Academic Publishers, Vol. 21. p. 412-412

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Data Mining
Amoxicillin
Biological Phenomena
Computational Biology
Salmonella
39 Citations (Scopus)

Early life microbial colonization of the gut and intestinal development differ between genetically divergent broiler lines

Schokker, D., Veninga, G., Vastenhouw, S. A., Bossers, A., de Bree, F. M., Kaal-Lansbergen, L. M. T. E., Rebel, J. M. J. & Smits, M. A., 2015, In : BMC Genomics. 16, 418.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gastrointestinal Contents
Disease Susceptibility
Livestock
Chickens
Genotype

Effect of fructooligosaccharides on gut health in neonatal piglets : VDI-3 Piglet experimen

Schokker, D., Jansen, R., Jansman, A. J. M., Vastenbouw, S., de Bree, F. M., Bossers, A., Rebel, J. M. J. & Smits, M. A., 2015, Wageningen: Wageningen UR Livestock Research. 39 p. (Livestock Research report; no. 913)

Research output: Book/ReportReportProfessional

Open Access
Mental Competency
Biological Phenomena
Ribosomal DNA
Oral Administration
Mucous Membrane

Effect of maternal antibiotic intervention in sows on gut development and microbiota in offspring : report of Feed4Foodure, VDI-2: 2013/2014

de Greeff, A., Schokker, D., Roubos, P., Ramaekers, P., van der Peet-Schwering, C. M. C., Bikker, P., Vastenhouw, S. A., de Bree, F. M., Bossers, A., Harders, F. L., Smits, M. A. & Rebel, J. M. J., 2015, Wageningen: Wageningen UR Livestock Research. 48 p. (Livestock Research report; no. 892)

Research output: Book/ReportReportProfessional

Open Access
Mothers
Anti-Bacterial Agents
Colostrum
Milk
Parturition

Effects of a high level of dietary zinc on intestinal microbiota and gene expression in piglets

Jansman, A. J. M., Hulst, M. M., Schokker, D., Gerritsen, R. & Smits, M. A., 2015.

Research output: Contribution to conferencePosterProfessional

Impact on gut development of an early life oral antibiotic intervention in broilers

Schokker, D., Jansman, A. J. M., de Bruin, N., Vastenhouw, S. A., de Bree, F. M., Rebel, J. M. J. & Smits, M. A., 2015, Wageningen: Wageningen UR Livestock Research. 30 p. (Livestock Research report; no. 859)

Research output: Book/ReportReportProfessional

Open Access
38 Citations (Scopus)

Long-lasting effects of Early-life Antibiotic Treatment and routine Animal Handling on Gut Microbiota Composition and Immune System in Pigs

Schokker, D., Zhang, J., Vastenhouw, S. A., Heilig, G. H. J., Smidt, H., Rebel, J. M. J. & Smits, M. A., 2015, In : PLoS ONE. 10, 2, e0116523.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
animal handling
Immune system
intestinal microorganisms
Microbiota
immune system
3 Citations (Scopus)

Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets

Benis, N., Schokker, D., Suarez Diez, M., Martins dos Santos, V. A. P., Smidt, H. & Smits, M. A., 2015, In : BMC Genomics. 16, 556.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Biological Phenomena
Gene Expression
Anti-Bacterial Agents
Systems Biology
Health
2014
65 Citations (Scopus)

Early-life environmental variation affects intestinal microbiota and immune development in new-born piglets

Schokker, D. J., Zhang, J., Zhang, L. L., Vastenhouw, S. A., Heilig, H. G. H. J., Smidt, H., Rebel, J. M. J. & Smits, M. A., 2014, In : PLoS ONE. 9, 6, e100040.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
intestinal microorganisms
microbial colonization
piglets
Anti-Bacterial Agents
antibiotics