Dirk-Jan M. van Workum

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1 Similar Profiles

6 Article
3 Preprint
1 Poster
1 Software

Lactuca super-pangenome reduces bias towards reference genes in lettuce research
van Workum, F. J. M., Mehrem, S. L., Snoek, L. B., Alderkamp, M. C., Lapin, D. N., Mulder, F. F. M., Van Den Ackerveken, G., de Ridder, D., Schranz, M. E. & Smit, S., 22 Jun 2024, BioRxiv.
Research output: Working paper › Preprint

Open Access
Lactuca super-pangenome reduces bias towards reference genes in lettuce research
van Workum, D. J. M., Mehrem, S. L., Snoek, B. L., Alderkamp, M. C., Lapin, D., Mulder, F. F. M., Van den Ackerveken, G., de Ridder, D., Schranz, M. E. & Smit, S., 28 Oct 2024, In: BMC Plant Biology. 24, 12 p., 1019.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
2 Citations (Scopus)
PanVA: Pangenomic Variant Analysis
van den Brandt, A., Jonkheer, E. M., van Workum, D. J. M., van de Wetering, H., Smit, S. & Vilanova, A., 2024, In: IEEE Transactions on Visualization and Computer Graphics. 30, 8, p. 4895-4909 15 p.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
2 Citations (Scopus)
Genome assembly and analysis of Lactuca virosa; implications for lettuce breeding
Xiong, W., van Workum, F. J. M., Berke, L. & Schranz, M. E., May 2023, BioRxiv.
Research output: Working paper › Preprint

Open Access
Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding
Xiong, W., van Workum, D.-J., Berke, L., Bakker, L., Schijlen, E., Becker, F., van de Geest, H., Peters, S., Michelmore, R., van Treuren, R., Jeuken, M., Smit, S. & Schranz, E., 23 Sept 2023, In: G3: Genes, Genomes, Genetics. 13, 11, jkad204.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
5 Citations (Scopus)

Dataset underlying the publication: "MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment"
van Workum, D.-J. M. (Creator), Dey, K. K. (Creator), Kozik, A. (Creator), Lavelle, D. (Creator), de Ridder, D. (Creator), Schranz, E. (Creator), Michelmore, R. (Creator) & Smit, S. (Creator), Wageningen University & Research, 17 Feb 2025
DOI: 10.4121/4b39da65-2eef-4e05-8583-25f8850cf932
Dataset
Dataset: Structural, functional and evolutionary characterisation of genes in Lactuca sp. reference genomes in the context of eudicots
van Workum, D.-J. M. (Creator), de Ridder, D. (Creator), Schranz, E. (Creator) & Smit, S. (Creator), Wageningen University & Research, 10 Dec 2024
DOI: 10.4121/af1b751d-23a2-4954-ac01-4eb6c68d895b
Dataset
Data underlying the publication: Lactuca super-pangenome reduces bias towards reference genes in lettuce research
van Workum, D.-J. M. (Creator), Mehrem, S. L. (Creator), Snoek, B. (Creator), Alderkamp, M. (Creator), Lapin, D. (Creator), Mulder, F. F. M. (Creator), van den Ackerveken, G. (Creator), de Ridder, D. (Creator), Schranz, E. (Creator) & Smit, S. (Creator), Wageningen University & Research, 6 Jun 2024
DOI: 10.4121/c7935d6a-d6ae-42e7-af7e-0ae8cddf70d7
Dataset
Picochlorum sp. BPE23 genome assembly
Barten, R. J. P. (Creator), van Workum, F. J. M. (Creator), de Bakker, E. (Creator), Risse, J. E. (Creator), Kleisman, M. (Creator), Correia Navalho, S. A. (Creator), Smit, S. (Creator), Wijffels, R. H. (Creator), Nijveen, H. (Creator) & Barbosa, M. J. (Creator), Wageningen University & Research, 23 Aug 2022
https://www.ncbi.nlm.nih.gov/bioproject/872549
Dataset
sequencing data for Lactuca virosa assembly and annotation
Xiong, W. (Creator), van Workum, D.-J. (Creator), Berke, L. (Creator), Bakker, L. (Creator), Schijlen, E. (Creator), Becker, F. (Creator), van de Geest, H. (Creator), Peters, S. (Creator), Michelmore, R. (Creator), van Treuren, R. (Creator), Jeuken, M. (Creator), Smit, S. (Creator) & Schranz, E. (Creator), Wageningen University & Research, 25 May 2023
https://www.ebi.ac.uk/ena/browser/view/PRJEB56289
Dataset

An integrative analysis of variation in Lactuca.
van Workum, D.-J. M. (PhD candidate), de Ridder, D. (Promotor), Schranz, E. (Co-promotor) & Smit, S. (Co-promotor)
1/11/20 → …
Project: PhD

Dirk-Jan M. van Workum, MSc

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Collaborations and top research areas from the last five years

Dive into details

Lactuca super-pangenome reduces bias towards reference genes in lettuce research

Lactuca super-pangenome reduces bias towards reference genes in lettuce research

PanVA: Pangenomic Variant Analysis

Genome assembly and analysis of Lactuca virosa; implications for lettuce breeding

Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding

Dataset underlying the publication: "MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment"

Dataset: Structural, functional and evolutionary characterisation of genes in Lactuca sp. reference genomes in the context of eudicots

Data underlying the publication: Lactuca super-pangenome reduces bias towards reference genes in lettuce research

Picochlorum sp. BPE23 genome assembly

sequencing data for Lactuca virosa assembly and annotation

An integrative analysis of variation in Lactuca.

Dirk-Jan M. van Workum, MSc

Fingerprint

Collaborations and top research areas from the last five years

Research output

Datasets

Projects