Research output per year
Research output per year
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Dive into the research topics where Dick de Ridder is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Advanced drinking water production by 1 kDa hollow fiber nanofiltration - Biological activated carbon filtration (HFNF - BACF) enhances biological stability and reduces micropollutant levels compared with conventional surface water treatment
Schurer, R., de Ridder, D. J., Schippers, J. C., Hijnen, W. A. M., Vredenbregt, L. & van der Wal, A., Apr 2023, In: Chemosphere. 321, 16 p., 138049.Research output: Contribution to journal › Article › Academic › peer-review
Open Access1 Citation (Scopus) -
Beyond sequence: Structure-based machine learning
Durairaj, J., de Ridder, D. & van Dijk, A. D. J., 2023, In: Computational and Structural Biotechnology Journal. 21, p. 630-643Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
Revealing determinants of translation efficiency via whole-gene codon randomization and machine learning
Nieuwkoop, T., Terlouw, B. R., Stevens, K. G., Scheltema, RA., De Ridder, D., Van der Oost, J. & Claassens, NJ., 21 Mar 2023, In: Nucleic acids research. 51, 5, p. 2363-2376Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories
Götz, M., Barth, A., Bohr, S. S. R., Börner, R., Chen, J., Cordes, T., Erie, D. A., Gebhardt, C., Hadzic, M. C. A. S., Hamilton, G. L., Hatzakis, N. S., Hugel, T., Kisley, L., Lamb, D. C., de Lannoy, C., Mahn, C., Dunukara, D., de Ridder, D., Sanabria, H., Schimpf, J., & 9 others, 14 Sept 2022, In: Nature Communications. 13, 1, p. 5402Research output: Contribution to journal › Article › Academic › peer-review
Open Access5 Citations (Scopus) -
Digital twins in the green life sciences
Knibbe, W. J., Afman, L., Boersma, S., Bogaardt, M-J., Evers, J., Van Evert, F., Van der Heide, J., Hoving, I., Van Mourik, S., De Ridder, D. & De Wit, A., 2022, In: NJAS: Impact in Agricultural and Life Sciences. 94, 1, p. 249-279Research output: Contribution to journal › Article › Academic › peer-review
Open Access
Datasets
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Profile hidden Markov models trained on aligned KEGG Orthology sequences for enzyme annotation
Rodenburg, Y. A. (Creator), de Ridder, D. (Contributor), Govers, F. (Contributor) & Seidl, M. F. (Creator), Wageningen University & Research, 7 Oct 2019
DOI: 10.4121/uuid:9b6e6aa0-b815-409f-9e96-04828b03290b
Dataset
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Single-molecule protein sequencing through fingerprinting: computational assessment
Yao, Y. (Creator), Docter, M. W. (Creator), van Ginkel, H. G. T. M. (Creator), de Ridder, D. (Creator) & Joo, C. (Creator), Delft University of Technology, 19 Jan 2018
DOI: 10.4121/uuid:08a078fc-9d4c-44d1-88c9-9cb412b83a46
Dataset
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Accelerated discovery of functional variation in pigs
Derks, M. (Creator), Gross, C. (Creator), Lopes, M. S. (Creator), Reinders, M. J. T. (Creator), Bosse, M. (Creator), Gjuvsland, A. B. (Creator), Harlizius, B. (Creator), de Ridder, D. (Creator), Megens, H. (Creator) & Groenen, M. A. M. (Creator), Wageningen University and Research, 4 Apr 2021
https://www.ebi.ac.uk/ena/browser/view/PRJEB44082
Dataset
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Indexed pPHRED scores
Gross, C. (Creator), Derks, M. (Creator), Megens, H. (Creator), Bosse, M. (Creator), Groenen, M. A. M. (Creator), Reinders, M. J. T. (Creator) & de Ridder, D. (Creator), Wageningen University & Research, 2020
http://www.bioinformatics.nl/pCADD/indexed_pPHRED-scores/
Dataset
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Supporting data for "BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters"
Kautsar, S. (Creator), van der Hooft, J. (Creator), de Ridder, D. (Creator) & Medema, M. (Creator), Wageningen University & Research, 24 Nov 2020
DOI: 10.5524/100826
Dataset
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Digital Twins in the Living Environment
Dick de Ridder (Contributor), Jene van der Heide (Contributor) & Willem Jan Knibbe (Speaker)
1 Nov 2021Activity: Talk or presentation › Public lecture/debate/seminar › Academic
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6th Conference New Technologies in Agriculture.
Willem Jan Knibbe (Invited speaker), Dick de Ridder (Contributor) & Jene van der Heide (Contributor)
9 Dec 2021Activity: Talk or presentation › Oral presentation › Academic
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From GWAS Peak to Causal Mutation; Utilizing p(ig)CADD Scores to Prioritize Sequence Variation
Martijn Derks (Speaker), Christian Gross (Contributor), M.S. Lopes (Contributor), M.J.T. Reinders (Contributor), Mirte Bosse (Contributor), Arne B. Gjuvsland (Contributor), Hendrik-Jan Megens (Contributor), Dick de Ridder (Contributor) & Martien Groenen (Contributor)
11 Jan 2020 → 15 Jan 2020Activity: Talk or presentation › Public lecture/debate/seminar › Other
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A survey of deleterious variants in highly managed commercial layer lines
M.F.L. Derks (Presenter), H.J.W.C. Megens (Contributor), M. Bosse (Contributor), Christian Gross (Contributor), M. Reinders (Contributor), D. de Ridder (Contributor) & M. Groenen (Contributor)
4 Apr 2017Activity: Other › Other
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Identification of Deleterious Alleles in Poultry
M.F.L. Derks (Contributor), M. Bosse (Speaker), H.J.W.C. Megens (Contributor), D. de Ridder (Contributor), Marcel J.T. Reinders (Contributor), Christian Gross (Contributor) & M. Groenen (Contributor)
15 Jan 2017Activity: Talk or presentation › Oral presentation › Other
Press/Media
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Dutch cabinet invests EUR42 million in CROP-XR institute for faster development of resilient agricultural crops
Richard Immink, Christa Testerink, Dick de Ridder & Aalt-Jan van Dijk
18/04/22
1 Media contribution
Press/Media: Research › Popular
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Smart search for traits
Christa Testerink, Dick de Ridder & Aalt-Jan van Dijk
29/09/21 → 30/09/21
2 Media contributions
Press/Media: Research › Professional
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Genoomrecherche is (n)iets op het spoor in Wuhan; Ophef
10/04/21
1 Media contribution
Press/Media: Research › Popular
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Forecasting with digital doppelgängers
10/06/20 → 11/06/20
2 Media contributions
Press/Media: Expert Comment › Other
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WUR is investing four million euros on self-learning models: A digital twins baby boom
Dick de Ridder, Willem Jan Knibbe, Lydia Afman, Thomas Been & Jochem Evers
27/02/20 → 28/02/20
2 Media contributions
Press/Media: Research › Other
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Virus diversity and genome evolution in natural plant ecosystems (V-GENE)
Karapliafis, D., de Ridder, D. & Kupczok, A.
1/02/23 → …
Project: PhD
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Inferring spatiotemporal-transcriptome-based gene regulatory networks
Gao, Y., de Ridder, D. & van Dijk, A.
1/01/23 → …
Project: PhD