Detmer Sipkema

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Research Output

57 Article
8 Abstract
2 Comment/Letter to the editor
1 Report
3 More

Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis

Gavriilidou, A., Gutleben, J., Versluis, D., Forgiarini, F., van Passel, M. W. J., Ingham, C. J., Smidt, H. & Sipkema, D., 20 Aug 2020, In : BMC Genomics. 21, 569.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Cultivation of Bacteria From Aplysina aerophoba: Effects of Oxygen and Nutrient Gradients

Gutleben, J., Loureiro, C., Ramírez Romero, L. A., Shetty, S., Wijffels, R. H., Smidt, H. & Sipkema, D., 19 Feb 2020, In : Frontiers in Microbiology. 11, 175.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Feed, Microbiota, and Gut Immunity: Using the Zebrafish Model to Understand Fish Health

López Nadal, A., Ikeda-Ohtsubo, W., Sipkema, D., Peggs, D., McGurk, C., Forlenza, M., Wiegertjes, G. F. & Brugman, S., 5 Feb 2020, In : Frontiers in Immunology. 11, 114.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

2 Citations (Scopus)

Metagenomic-and cultivation-based exploration of anaerobic chloroform biotransformation in hypersaline sediments as natural source of chloromethanes

Peng, P., Lu, Y., Bosma, T. N. P., Nijenhuis, I., Nijsse, B., Shetty, S. A., Ruecker, A., Umanets, A., Ramiro-Garcia, J., Kappler, A., Sipkema, D., Smidt, H. & Atashgahi, S., May 2020, In : Microorganisms. 8, 5, 665.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Microbiota changes and immune-modulation by feed in zebrafish

Lopez Nadal, A., Lute, C., Sipkema, D., Peggs, D., McGurk, C., Wiegertjes, G. & Brugman, S., 14 Feb 2020, WIAS Annual Conference 2020: Frontiers in Animal Sciences. WIAS, p. 26-26

Research output: Chapter in Book/Report/Conference proceeding › Abstract › Academic

Open Access

Datasets

Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions

Versluis, D. (Creator), D'Andrea, M. M. (Creator), Ramiro Garcia, J. (Creator), Leimena, M. M. (Creator), Hugenholtz, F. (Creator), Zhang, J. (Creator), Ozturk, B. (Creator), Nylund, L. (Creator), Sipkema, D. (Creator), van Schaik, W. (Creator), de Vos, W. (Creator), Kleerebezem, M. (Creator), Smidt, H. (Creator) & van Passel, M. W. J. (Creator), Wageningen University, 29 Jan 2016

https://www.ebi.ac.uk/ena/data/view/PRJEB7599

Dataset

Evolution of the microbial communities in a submerged fixed bed bioreactor during biological treatment of saline urban wastewater

Cortes Lorenzo, C. (Creator), Sipkema, D. (Creator), Rodríguez-Díaz, M. (Creator), Fuentes Enriquez de Salamanca, S. (Creator), Juárez-Jiménez, B. (Creator), Rodelas, B. (Creator), Smidt, H. (Creator) & González-López, J. (Creator), Wageningen University, 21 May 2013

https://www.ebi.ac.uk/ena/data/view/PRJEB1662

Dataset

Diversity of tryptophan halogenases in sponges of the genus Aplysina

Gutleben, J. (Creator), Koehorst, J. (Creator), Mcpherson, K. (Creator), Pomponi, S. (Creator), Wijffels, R. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University, 17 Sep 2018

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA491469/

Dataset

Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river

Atashgahi, S. (Creator), Aydin, R. (Creator), Rocha Dimitrov, M. (Creator), Sipkema, D. (Creator), Hamonts, K. (Creator), Lahti, L. (Creator), Maphosa, F. (Creator), Kruse, T. (Creator), Saccenti, E. (Creator), Springael, D. (Creator), Dejonghe, W. (Creator) & Smidt, H. (Creator), Wageningen University, 29 Oct 2015

https://www.ebi.ac.uk/ena/data/view/PRJEB8703

Dataset

Cultivation of bacteria from Aplysina aerophoba: effects of oxygen and nutrient gradients

Gutleben, J. (Creator), Sales E Santos Loureiro, C. (Creator), Ramírez Romero, L. A. (Creator), Shetty, S. (Creator), Wijffels, R. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University, 30 Jul 2019

https://www.ebi.ac.uk/ena/data/view/PRJEB31820

Dataset