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Research Output 1988 2020

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2019
15 Citations (Scopus)

A Jasmonate Signaling Network Activates Root Stem Cells and Promotes Regeneration

Zhou, W., Lozano-Torres, J. L., Blilou, I., Zhang, X., Zhai, Q., Smant, G., Li, C. & Scheres, B., 2 May 2019, In : Cell. 177, 4, p. 942-956

Research output: Contribution to journalArticleAcademicpeer-review

Stem cells
Regeneration
Stem Cells
Chemical activation
Growth

Geometric cues forecast the switch from two- to three-dimensional growth in Physcomitrella patens

Tang, H., Duijts, K., Bezanilla, M., Scheres, B., Vermeer, J. E. M. & Willemsen, V., 22 Oct 2019, In : New Phytologist. 225, 5, p. 1945-1955

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Bryopsida
Physcomitrella patens
Cues
gametophores
Growth
1 Citation (Scopus)

Gradient Expression of Transcription Factor Imposes a Boundary on Organ Regeneration Potential in Plants

Durgaprasad, K., Roy, M. V., Venugopal M., A., Kareem, A., Raj, K., Willemsen, V., Mähönen, A. P., Scheres, B. & Prasad, K., 8 Oct 2019, In : Cell Reports. 29, 2, p. 453-463

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Meristem
Regeneration
Transcription Factors
Mental Competency

Topology of regulatory networks that guide plant meristem activity: similarities and differences

Shimotohno, A. & Scheres, B., Oct 2019, In : Current Opinion in Plant Biology. 51, p. 74-80

Research output: Contribution to journalArticleAcademicpeer-review

meristems
topology
cell differentiation
plant hormones
stem cells
2018
13 Citations (Scopus)

A computational framework for cortical microtubule dynamics in realistically shaped plant cells

Chakrabortty, B., Blilou, I., Scheres, B. & Mulder, B. M., 1 Feb 2018, In : PLoS Computational Biology. 14, 2, e1005959.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microtubules
Plant Cells
microtubules
Geometry
Cell
14 Citations (Scopus)

A Plausible Microtubule-Based Mechanism for Cell Division Orientation in Plant Embryogenesis

Chakrabortty, B., Willemsen, V., de Zeeuw, T., Liao, C. Y., Weijers, D., Mulder, B. & Scheres, B., 8 Oct 2018, In : Current Biology. 28, 19, p. 3031-3043.e2

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microtubules
Cell Division
microtubules
Embryonic Development
cell division
6 Citations (Scopus)

Coordination of growth in root and shoot apices by AIL/PLT transcription factors

Scheres, B. & Krizek, B. A., 1 Feb 2018, In : Current Opinion in Plant Biology. 41, p. 95-101

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
root growth
transcription factors
root tips
cell differentiation
shoots
56 Citations (Scopus)

Lateral root formation and the multiple roles of auxin

Du, Y. & Scheres, B., 1 Jan 2018, In : Journal of Experimental Botany. 69, 2, p. 155-167

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Indoleacetic Acids
auxins
Asymmetric Cell Division
Plant Growth Regulators
Meristem
6 Citations (Scopus)

Mediator subunit MED31 is required for radial patterning of Arabidopsis roots

Zhang, X., Zhou, W., Chen, Q., Fang, M., Zheng, S., Scheres, B. & Li, C., 12 Jun 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 24, p. E5624-E5633

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
stem cells
Arabidopsis
transcription (genetics)
DNA-directed RNA polymerase
Arabidopsis thaliana
6 Citations (Scopus)

Optimizing FRET-FLIM labeling conditions to detect nuclear protein interactions at native expression levels in living Arabidopsis roots

Long, Y., Stahl, Y., Weidtkamp-Peters, S., Smet, W., Du, Y., Gadella, T. W. J., Goedhart, J., Scheres, B. & Blilou, I., 15 May 2018, In : Frontiers in Plant Science. 9, 639.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
nuclear proteins
energy transfer
microscopy
Arabidopsis
image analysis
16 Citations (Scopus)

Root stem cell niche organizer specification by molecular convergence of PLETHORA and SCARECROW transcription factor modules

Shimotohno, A., Heidstra, R., Blilou, I. & Scheres, B., 1 Aug 2018, In : Genes and Development. 32, 15-16, p. 1085-1100

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Stem Cell Niche
Transcription Factors
Homeobox Genes
Stem Cells
Proliferating Cell Nuclear Antigen

Tuning Division and Differentiation in Stomata: How to Silence a MUTE

Zamora-Zaragoza, J. & Scheres, B., 7 May 2018, In : Developmental Cell. 45, 3, p. 282-283

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cell Division
Tuning
Cells
Switches
Tissue
2017
27 Citations (Scopus)

Arabidopsis RETINOBLASTOMA RELATED directly regulates DNA damage responses through functions beyond cell cycle control

Horvath, B. M., Kourova, H., Nagy, S., Nemeth, E., Magyar, Z., Papdi, C., Ahmad, Z., Sanchez-Perez, G. F., Perilli, S., Blilou, I. & Scheres, B., 2017, In : The EMBO Journal. 36, p. 1261-1278 e201694561.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cell Cycle Checkpoints
Arabidopsis
DNA Damage
Genes
Cells
44 Citations (Scopus)

In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots

Long, Y., Stahl, Y., Weidtkamp-Peters, S., Postma, M., Zhou, W., Goedhart, J., Sánchez-Pérez, M. I., Gadella, T. W. J., Simon, R., Scheres, B. & Blilou, I., 2017, In : Nature. 548, 7665, p. 97-102

Research output: Contribution to journalArticleAcademicpeer-review

Energy Transfer
Fluorescence Microscopy
Arabidopsis
Proteins
Transcription Factors
26 Citations (Scopus)

Non-canonical WOX11-mediated root branching contributes to plasticity in arabidopsis root system architecture

Sheng, L., Hu, X., Du, Y., Zhang, G., Huang, H., Scheres, B. & Xu, L., 2017, In : Development. 144, 17, p. 3126-3133

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Arabidopsis
Cues
Seedlings
Soil
20 Citations (Scopus)

PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth

Du, Y. & Scheres, B., 31 Oct 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 44, p. 11709-11714

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
meristems
transcription factors
Arabidopsis
root primordia
mutants
32 Citations (Scopus)

The plant perceptron connects environment to development

Scheres, B. & Van Der Putten, W. H., 2017, In : Nature. 543, 7645, p. 337-345

Research output: Contribution to journalArticleAcademicpeer-review

plant response
life history
9 Citations (Scopus)

XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED

Zhao, C., Lasses, T., Bako, L., Kong, D., Zhao, B., Chanda, B., Bombarely, A., Cruz-Ramírez, A., Scheres, B., Brunner, A. M. & Beers, E. P., 2017, In : New Phytologist. 216, 1, p. 76-89

Research output: Contribution to journalArticleAcademicpeer-review

Angiosperms
tracheary elements
Xylem
xylem
Angiospermae
2016
27 Citations (Scopus)

Multisite gateway-compatible cell type-specific gene-inducible system for plants

Siligato, R., Wang, X., Yadav, S. R., Lehesranta, S., Ma, G., Ursache, R., Sevilem, I., Zhang, J., Gorte, M., Prasad, K., Wrzaczek, M., Heidstra, R., Murphy, A., Scheres, B. & Mähönen, A. P., 2016, In : Plant Physiology. 170, 2, p. 627-641

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Organism Cloning
molecular cloning
promoter regions
Arabidopsis
Genes
3 Citations (Scopus)

PPP1, a plant-specific regulator of transcription controls Arabidopsis development and PIN expression

Benjamins, R., Barbez, E., Ortbauer, M., Terpstra, I., Lucyshyn, D., Moulinier-Anzola, J., Khan, M. A., Leitner, J., Malenica, N., Butt, H., Korbei, B., Scheres, B., Kleine-Vehn, J. & Luschnig, C., 2016, In : Scientific Reports. 6, 32196.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
binding proteins
transcription factors
promoter regions
Arabidopsis
DNA-binding proteins
6 Citations (Scopus)

Root patterning: It takes two to tangle

Scheres, B. & Laskowski, M., 2016, In : Journal of Experimental Botany. 67, 5, p. 1201-1203

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Botany
information sources
plant breeding
botany
Breeding
39 Citations (Scopus)

The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots

Santuari, L., Sanchez-Perez, G. F., Luijten, M., Rutjens, B., Terpstra, I., Berke, L., Gorte, M., Prasad, K., Bao, D., Timmermans-Hereijgers, J. L. P. M., Maeo, K., Nakamura, K., Shimotohno, A., Pencik, A., Novak, O., Ljung, K., Van Heesch, S., De Bruijn, E., Cuppen, E., Willemsen, V. & 6 others, Mähönen, A. P., Lukowitz, W., Snel, B., De Ridder, D., Scheres, B. & Heidstra, R., 2016, In : The Plant Cell. 28, 12, p. 2937-2951

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Regulatory Networks
Arabidopsis
cell differentiation
Cell Differentiation
Growth
2015
27 Citations (Scopus)

A plant U-box protein, PUB4, regulates asymmetric cell division and cell proliferation in the root meristem

Kinoshita, A., ten Hove, C. A., Tabata, R., Yamada, M., Shimizu, N., Ishida, T., Yamaguchi, K., Shigenobu, S., Takebayashi, Y., Luchies, J., Kobayashi, M., Kurata, T., Wada, T., Seo, M., Hasebe, M., Blilou, I., Fukuda, H., Scheres, B., Heidstra, R., Kamiya, Y. & 1 others, Sawa, S., 2015, In : Development. 142, p. 444-453

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Asymmetric Cell Division
Meristem
Cell Proliferation
Stem Cells
Proteins
51 Citations (Scopus)

Arabidopsis BIRD zinc finger proteins jointly stabilize tissue boundaries by confining the cell fate regulator SHORT-ROOT and contributing to fate specification

Long, Y., Smet, W., Cruz-Ramírez, A., Sanchez Perez, G., Scheres, B. & Blilou, I., 2015, In : The Plant Cell. 27, 4, p. 1185-1199

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
zinc finger motif
Zinc Fingers
Arabidopsis
Proteins
proteins

Moleculaire inzichten vergroten sturingsmogelijkheden wortelgroei : Auxine speelt een sleutelrol

Scheres, B. J. G. & Heuvelink, E., Dec 2015, In : Onder Glas. 12, 12, p. 16-17

Research output: Contribution to journalArticleProfessional

Open Access
69 Citations (Scopus)

PLETHORA genes control regeneration by a two-step mechanism

Kareem, A., Durgaprasad, K., Sugimoto, K., Du, Y., Pulianmackal, A. J., Trivedi, Z. B., Abhayadev, P. V., Pinon, V., Meyerowitz, E. M., Scheres, B. & Prasad, K., 2015, In : Current Biology. 25, 8, p. 1017-1030

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Regeneration
Genes
Tissue
shoots
Stem cells
26 Citations (Scopus)

Root developmental programs shape the Medicago truncatula nodule meristem

Franssen, H., Xiao, T. T., Kulikova, O., Wan, X., Bisseling, T., Scheres, B. & Heidstra, R., 2015, In : Development. 142, p. 2941-2950

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Medicago truncatula
Meristem
Rhizobium
Genes
Gene Knockdown Techniques
21 Citations (Scopus)

SCARECROW-LIKE23 and SCARECROW jointly specify endodermal cell fate but distinctly control SHORT-ROOT movement

Long, Y., Goedhart, J., Schneijderberg, M., Terpstra, I., Shimotohno, A., Bouchet, B. P., Akhmanova, A., Gadella, T. W. J., Heidstra, R., Scheres, B. & Blilou, I., 2015, In : The Plant Journal. 84, 4, p. 773-784

Research output: Contribution to journalArticleAcademicpeer-review

Meristem
cells
Transcription Factors
stele
root meristems
12 Citations (Scopus)

The logic of communication: Roles for mobile transcription factors in plants

Long, Y., Scheres, B. & Blilou, I., 2015, In : Journal of Experimental Botany. 66, 4, p. 1133-1144

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Transcription Factors
transcription factors
Plant Development
prokaryotic cells
Eukaryota
55 Citations (Scopus)

Transcriptional control of tissue formation throughout root development

Moreno-Risueno, M. A., Sozzani, R., Yardimci, G. G., Petricka, J. J., Vernoux, T., Blilou, I., Alonso, J., Winter, C. M., Ohler, U., Scheres, B. & Benfey, P. N., 2015, In : Science. 350, 6259, p. 426-430 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

transcription factors
plant tissues
stem cells
cell division
root growth
2014
40 Citations (Scopus)

Irreversible fate commitment in the Arabidopsis stomatal lineage requires a Fama and Retinoblastoma-related module

Matos, J. L., Lau, O. S., Hachez, C., Cruz-Ramirez, A., Scheres, B. & Bergmann, D. C., 2014, In : eLife. 3, e03271.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Retinoblastoma
Stem cells
Arabidopsis
Plant Cells
Cell Lineage

Luister! De wortel spreekt

Heselmans, M., Bisseling, T. & Scheres, B., 2014, In : NRC handelsblad. p. W4-W5 2 p.

Research output: Contribution to journalArticlePopular

150 Citations (Scopus)

PLETHORA gradient formation mechanism separates auxin responses

Mahonen, A. P., ten Tusscher, K., Diaz Trivino, S., Heidstra, R. & Scheres, B., 2014, In : Nature. 515, p. 125-129

Research output: Contribution to journalArticleAcademicpeer-review

auxins
meristems
tropics
transcription (genetics)
tropisms
30 Citations (Scopus)

Precise control of plant stem cell activity through parallel regulatory inputs

Bennett, T., van Toorn, A., Willemsen, V. & Scheres, B., 2014, In : Development. 141, p. 4055-4064

Research output: Contribution to journalArticleAcademicpeer-review

Plant Stems
Plant Cells
Stem Cells
Transcription Factors
Stem Cell Niche
2013
65 Citations (Scopus)

A SCARECROW-RETINOBLASTOMA Protein Network Controls Protective Quiescence in the Arabidopsis Root Stem Cell Organizer

Cruz-Ramirez, A., Diaz Trivino, S., Wachsman, G., Du, Y., Arteága-Vázquez, M., Zhang Hongtao, Benjamins, R., Blilou, I., Neef, A. B., Chandler, V. & Scheres, B., 2013, In : PloS Biology. 11, 11, 12 p., e1001724.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Stem cells
Arabidopsis
stem cells
Stem Cells
Stem Cell Niche
87 Citations (Scopus)

Local auxin biosynthesis regulation by PLETHORA transcription factors controls phyllotaxis in Arabidopsis.

Pinon, V., Prasad, K., Grigg, S. P., Sanchez Perez, G. F. & Scheres, B., 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 3, p. 1107-1112

Research output: Contribution to journalArticleAcademicpeer-review

phyllotaxy
auxins
transcription factors
Arabidopsis
biosynthesis
48 Citations (Scopus)

Phyllotaxis and Rhizotaxis in Arabidopsis Are Modified by Three PLETHORA Transcription Factors

Hofhuis, H., Laskowski, M., Du, Y. J., Prasad, K., Grigg, S., Pinon, V. & Scheres, B., 2013, In : Current Biology. 23, 11, p. 956-962

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
phyllotaxy
Indoleacetic Acids
Meristem
Arabidopsis
Transcription Factors
57 Citations (Scopus)

Polar auxin transport: models and mechanisms

van Berkel, K., de Boer, R. J., Scheres, B. & ten Tusscher, K., 2013, In : Development. 140, 11, p. 2253-2268

Research output: Contribution to journalArticleAcademicpeer-review

Indoleacetic Acids
Plant Development
Meristem
Active Biological Transport
Hormones
2012
162 Citations (Scopus)

A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetic stem cell division

Cruz-Ramirez, A., Diaz-Trivino, S., Blilou, I., Benjamins, R., Long, Y. & Scheres, B. J. G., 2012, In : Cell. 150, 5, p. 1002-1015

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Asymmetric Cell Division
Stem cells
Cell Division
Cues
Indoleacetic Acids
60 Citations (Scopus)

A PHABULOSA/Cytokinin feedback loop controls root growth in Arabidopsis

Dello loio, R., Galinha, C., Fletcher, A. G., Grigg, S. P., Molnar, A., Willemsen, V. & Scheres, B., 2012, In : Current Biology. 22, 18, p. 1699-1704

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cytokinins
Arabidopsis
cytokinins
root growth
Feedback
80 Citations (Scopus)

Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes

Magyar, Z., Horvath, B., Khan, S. & Scheres, B., 2012, In : The EMBO Journal. 31, p. 1480-1493

Research output: Contribution to journalArticleAcademicpeer-review

Arabidopsis
Genes
Meristem
Chromatin
Sucrose
112 Citations (Scopus)

A ROP GTPase-dependent auxin signaling pahtway regulates the subcellular distribution of PIN2 in Arabidopsis roots

Lin, D., Nagawa, S., Chen, J., Cao, L. & Scheres, B., 2012, In : Current Biology. 22, 14, p. 1319-1325

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Indoleacetic Acids
GTP Phosphohydrolases
guanosinetriphosphatase
Arabidopsis
auxins
91 Citations (Scopus)

COP1 mediates the coordination of root and shoot growth by light through modulation of PIN10 and PIN2-dependent auxin transport in Arabidopsis.

Sassi, M., Lu, Y., Dhonukshe, P., Blilou, I. & Scheres, B., 2012, In : Development. 139, p. 3402-3412

Research output: Contribution to journalArticleAcademicpeer-review

Indoleacetic Acids
Arabidopsis
Light
Growth
Ocular Adaptation
132 Citations (Scopus)

ROP GTPase-dependent actin microfilaments promote PIN1 polarization by localized inhibition of clathrin-dependent endocytosis

Nagawa, S., Xu, T., Lin, D., Dhonukshe, P. & Scheres, B., 2012, In : PloS Biology. 10, 4, e1001299.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
clathrin
Clathrin
Indoleacetic Acids
GTP Phosphohydrolases
guanosinetriphosphatase
2011
213 Citations (Scopus)

A mutually inhibitory interaction between auxin and cytokinin specifies vascular pattern in roots.

Bishopp, A., Help, H., El-Showk, S., Weijers, D., Scheres, B. J. G., Friml, J., Benkova, E., Pekka Mahonen, A. & Helariutta, Y., 2011, In : Current Biology. 21, 11, p. 917-926

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cytokinins
Indoleacetic Acids
blood vessels
cytokinins
Blood Vessels
2003
207 Citations (Scopus)

Root-specific CLE19 overexpression and the sol1/2: Suppressors implicate a CLV-like pathway in the control of Arabidopsis root meristern maintenance

Casamitjana-Martinez, E., Hofhuis, H. F., Xu, J., Liu, C. M., Heidstra, R. & Scheres, B. J. G., 2003, In : Current Biology. 13, 16, p. 1435-1441

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Meristem
Stem cells
Arabidopsis
root meristems
stem cells
1996
33 Citations (Scopus)

isolation and characterization of an auxin-inducible glutathione S-transferase gene of Arabidopsis thaliana

van der Kop, D. A. M., Schuyer, M., Scheres, B., van der Zaal, B. J. & Hooykaas, P. J. J., 1996, In : Plant Molecular Biology. 30, p. 839-844

Research output: Contribution to journalArticleAcademicpeer-review

17 Citations (Scopus)

The pea early nodulin gene PsENOD7 maps in the region of linkage group I containing sym2 and leghaemoglobin.

Kozik, A., Matvienko, M., Scheres, B., Paruvangada, V. G., Bisseling, T., van Kammen, A., Ellis, T. H. N., LaRue, T. & Weeden, N., 1996, In : Plant Molecular Biology. 31, p. 149-156

Research output: Contribution to journalArticleAcademicpeer-review

Leghemoglobin
nodulins
leghemoglobin
Peas
linkage groups
1992
38 Citations (Scopus)

The PsENOD12 gene is expressed at two different sites in Afghanistan pea pseudonodules induced by auxin transport inhibitors.

Scheres, B., McKhann, H. I., Zalensky, A., Löbler, M., Bisseling, T. & Hirsch, A. M., 1992, In : Plant Physiology. 100, p. 1649-1655

Research output: Contribution to journalArticleAcademicpeer-review

1990
164 Citations (Scopus)

Sequential induction of nodulin gene expression in the developing pea nodule.

Scheres, B., van Engelen, F., van der Knaap, E., van de Wiel, C., van Kammen, A. & Bisseling, T., 1990, In : The Plant Cell. 2, p. 687-700

Research output: Contribution to journalArticleAcademicpeer-review

nodulins
Peas
peas
root nodules
Gene Expression