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Research Output

2011

SLIDER: A Generic Metaheuristic for the Discovery of Correlated Motifs in Protein-Protein Interaction Networks

Boyen, P., van Dyck, D., Neven, F., van Ham, R. C. H. J. & van Dijk, A. D. J., 2011, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 8, 5, p. 1344-1357

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)
2010

Bayesian Markov Random Rield Analysis for Protein Function Prediction Based on Network Data

Kourmpetis, Y. I. A., van Dijk, A. D. J., Bink, M. C. A. M., van Ham, R. C. H. J. & ter Braak, C. J. F., 2010, In : PLoS ONE. 5, 2, 10 p., e9293.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
69 Citations (Scopus)

Conserved and variable correlated mutations in the plant MADS protein network

van Dijk, A. D. J. & van Ham, R. C. H. J., 2010, In : BMC Genomics. 11, 607.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Continuous-time modeling of cell fate determination in Arabidopsis flowers

van Mourik, S., van Dijk, A. D. J., de Gee, M., Immink, R. G. H., Kaufmann, K., Angenent, G. C., van Ham, R. C. H. J. & Molenaar, J., 2010, In : BMC Systems Biology. 4, 13 p., 101.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
15 Citations (Scopus)

Modeling of auxin-induced flower patterns

van Mourik, S., Merks, R., Guravage, M., van Dijk, A. D. J., de Gee, M., Immink, R., Kaufmann, K., Angenent, G. C. & Molenaar, J., 2010.

Research output: Contribution to conferencePoster

Open Access

Quantitative modelling of the regulatory network of flowering time genes

Valentim, F. L., van Mourik, S., Immink, R. G. H., Angenent, G. C., van Ham, R. C. H. J. & van Dijk, A. D. J., 2010.

Research output: Contribution to conferenceConference paper

Quantitativ modelling of the gene regulatory network underlying floral timing

Valentim, F. H., Immink, R. G. H., van Mourik, S., van Ham, R. C. H. J., Angenent, G. C. & van Dijk, A. D. J., 2010.

Research output: Contribution to conferencePoster

Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction

van Dijk, A. D. J., Morabito, G., Fiers, M. A., van Ham, R. C. H. J., Angenent, G. C. & Immink, R. G. H., 2010, In : PLoS Computational Biology. 6, 11 p., e1001017.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
39 Citations (Scopus)
2009

Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome

Severing, E. I., van Dijk, A. D. J., Stiekema, W. & van Ham, R. C. H. J., 2009, In : BMC Genomics. 10, 13 p., 154.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
39 Citations (Scopus)

Continuous-time modeling of cell fate determination in Arabidopsis flowers

van Mourik, S., van Dijk, A. D. J., de Gee, M., Immink, G. H., Kaufmann, K., Angenent, G. C., van Ham, R. C. H. J. & Molenaar, J., 2009.

Research output: Contribution to conferencePoster

Open Access

SEPALLATA3: the 'glue' for MADS box transcription factor complex formation

Immink, G. H., Tonaco, I. A. N., de Folter, S., Shchennikova, A., van Dijk, A. D. J., Busscher-Lange, J., Borst, J. W. & Angenent, G. C., 2009, In : Genome Biology. 10, 16 p., R24.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
164 Citations (Scopus)

SLIDER: Mining correlated motifs in protein-protein interaction networks

Boyen, P., van Dijk, A. D. J., van Ham, R. C. H. J. & Neven, F., 2009.

Research output: Contribution to conferenceConference paperAcademic

Open Access
5 Citations (Scopus)
2008

Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control

van Dijk, A. D. J., ter Braak, C. J. F., Immink, G. H., Angenent, G. C. & van Ham, R. C. H. J., 2008, In : Bioinformatics. 24, 1, p. 26-33

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)

Predicting sub-Golgi localization of type II membrane proteins

van Dijk, A. D. J., Bosch, H. J., ter Braak, C. J. F., van der Krol, A. R. & van Ham, R. C. H. J., 2008, In : Bioinformatics. 24, 16, p. 1779-1786

Research output: Contribution to journalArticleAcademicpeer-review

25 Citations (Scopus)
2007

Dietary specific antibodies in spray-dried immune plasma prevent enterotoxigenic Escherichia coli F4 (ETEC) post weaning in diarrhoea in piglets

Niewold, T. A., van Dijk, A. D. J., Geenen, P. L., Roodink, H., Margry, R. & van der Meulen, J., 2007, In : Veterinary Microbiology. 124, 3-4, p. 362-369

Research output: Contribution to journalArticleAcademicpeer-review

31 Citations (Scopus)
2006

Acid-base balance of umbilical artery blood of liveborn piglets at birth and its relation with factors affecting delivery of individual piglets

van Dijk, A. D. J., van der Lende, T. & Taverna, M. A., 2006, In : Theriogenology. 66, 8, p. 1824-1833

Research output: Contribution to journalArticleAcademicpeer-review

21 Citations (Scopus)

The progress of delivery affects the acid-base balance of umbilical artery blood at birth in liveborn piglets

van Dijk, A. D. J., van der Lende, T. & Taverna, M. A., 2006.

Research output: Contribution to conferenceConference paperAcademic

2005

Factors affecting duration of the expulsive stage of parturition and piglet birth intervals in sows with uncomplicated, spontaneous farrowings

van Dijk, A. D. J., van Rens, B. T. T. M., van der Lende, T. & Taverne, M. A. M., 2005, In : Theriogenology. 64, 7, p. 1573-1590

Research output: Contribution to journalArticleAcademicpeer-review

79 Citations (Scopus)

Identification of sow and piglet factors affecting the duration of the expulsive stage of farrowing and piglet birth intervals

van Dijk, A. D. J., van Rens, B. T. T. M., van der Lende, T. & Taverne, M. A. M., 2005.

Research output: Contribution to conferenceAbstractAcademic