Wageningen University & Research

2024

Antigen-specific age-related memory CD8 T cells induce and track Alzheimer’s-like neurodegeneration

Panwar, A., Rentsendorj, A., Jhun, M., Cohen, R., Cordner, R., Gull, N., Pechnick, R., Duvall, G., Mardiros, A., Golchian, D., Schubloom, H., Jin, L-W., Van Dam, D., Vermeiren, Y. P. Y., de Reu, H., De Deyn, P. P., Raskatov, J., Black, K., Irvin, D., Williams, B., & 1 othersWheeler, C., Jan 2024, BioRxiv.

Research output: Working paper › Preprint

BIS-4D: Mapping soil properties and their uncertainties at 25 m resolution in the Netherlands

Helfenstein, A. F., Mulder, V. L., Hack-ten Broeke, M. J. D., van Doorn, M., Teuling, C., Walvoort, D. J. J. & Heuvelink, G. B. M., 1 Feb 2024, Copernicus Publications.

Research output: Working paper › Preprint

Open Access

Capillary Flow-MRI of Micronized Fat Crystal Dispersions: Effect of Shear History on Microstructure and Flow

Milc, K. W., Dijksman, J. A., den Adel, R., van Duynhoven, J. P. M. & Terenzi, C., 10 Feb 2024, SSRN, 13 p.

Research output: Working paper › Preprint

Carbon and greenhouse gas budgets of Europe: trends, interannual and spatial variability, and their drivers

Lauerwald, R., Bastos, A., McGrath, M. J., Maria Roxana Petrescu, A., Ritter, F., Andrew, R. M., Berchet, A., Broquet, G., Brunner, D., Chevallier, F., Cescatti, A., Filipek, S. P., Fortems-Cheiney, A., Forzieri, G., Friedlingstein, P., Fuchs, R., Gerbig, C., Houweling, S., Ke, P., Lerink, B. J. W., & 23 othersLi, W., Li, X., Luijkx, I. T., Monteil, G., Munassar, S., Nabuurs, G. J., Patra, P. K., Peylin, P., Pongratz, J., Regnier, P., Saunois, M., Schelhaas, M., Scholze, M., Sitch, S., Thompson, R. L., Tian, H., Tsuruta, A., Wilson, C., Wigneron, J. P., Yao, Y., Zaehle, S., Ciais, P. & Li, W., 15 Apr 2024, ESS Open Archive, 71 p.

Research output: Working paper › Preprint

Open Access

Diet breadth in two polyphagous Spodoptera moths in a wide range of host and non-host plants and the potential for range expansion

Roy, A., Wäschke, N., Chattington, S. R., Modlinger, R., Chakraborty, A., Chirere, T. E. S., Larsson, M. C., Heckel, D. G., Anderson, P. & Schlyter, F., Jul 2024, BioRxiv, 38 p.

Research output: Working paper › Preprint

Open Access

Dry pyroclouds promote longer-lasting extreme wildfire events intensification

Castellnou Ribau, M. C. R., Bachfischer, M., Miralles, M. & Vilà-Guerau De Arellano, J., 14 Mar 2024.

Research output: Working paper › Preprint

Open Access

Interannual variations in the Δ(17O) signature of atmospheric CO2 at two mid-latitude sites suggest a close link to stratosphere-troposphere exchange

Steur, P. M., Scheeren, H. A., Koren, G. B., Adnew, G. A., Peters, W. & Meijer, H. A. J., 12 Jan 2024, EGU.

Research output: Working paper › Preprint

Open Access

Key determinants of CRISPR/Cas9 induced inversions in tomato

Grubben, J., Bijsterbosch, G., Visser, R. G. F. & Schouten, H. J., 9 Jan 2024, BioRxiv, (BioRxiv).

Research output: Working paper › Preprint

Open Access

Lactuca super-pangenome reduces bias towards reference genes in lettuce research

van Workum, F. J. M., Mehrem, S. L., Snoek, L. B., Alderkamp, M. C., Lapin, D. N., Mulder, F. F. M., Van Den Ackerveken, G., de Ridder, D., Schranz, M. E. & Smit, S., 22 Jun 2024, BioRxiv.

Research output: Working paper › Preprint

Open Access

Magnetization Transfer MRI of intragastric milk digestion: a feasibility study in humans

Mayar, M., Terenzi, C., van Duynhoven, J. P. M. & Smeets, P. A. M., 23 May 2024, medRxiv, 25 p.

Research output: Working paper › Preprint

Maroon rice genomic diversity reflects 350 years of colonial history

van de Loosdrecht, M. S., Pinas, N. M., Tjoe Awie, J., Becker, F. F. M., Maat, H., van Velzen, R., van Andel, T. R. & Schranz, M. E., May 2024, BioRxiv, 24 p.

Research output: Working paper › Preprint

Open Access

Model-driven engineering of Cutaneotrichosporon oleaginosus ATCC 20509 for improved microbial oil production

Duman, Z. E., Julsing, M. K., Verbokkem, J. A. C., Wolbert, E. J. H., Martins dos Santos, V. A. P., Hugenholtz, J. & Suarez Diez, M., 19 Mar 2024, BioRxiv.

Research output: Working paper › Preprint

MOSAIC: a highly efficient, one-step recombineering approach to plasmid editing and diversification

van den Brink, M., Althuis, T. Y., Danelon, C. & Claassens, N., 22 Mar 2024, BioRxiv.

Research output: Working paper › Preprint

Novel multi-omics deconfounding variational autoencoders can obtain meaningful disease subtyping

Li, Z., Katz, S. M., Saccenti, E., Fardo, D. W., Claes, P., Martins dos Santos, V. A. P., Van Steen, K. & Roshchupkin, G. V., 7 Mar 2024, BioRxiv.

Research output: Working paper › Preprint

Open Access

Revealing spatial patterns of lateral hydraulic conductivity through sensitivity analysis of wflow_sbm

Weerts, A. H., Mohammed Ali, A. N. A., Imhoff, R. O. & van Verseveld, W., 8 Mar 2024, EGU/Copernicus.

Research output: Working paper › Preprint

Open Access

State of Wildfires 2023-24

Jones, M. W., Kelley, D. I., Burton, C. A., Di Giuseppe, F., Barbosa, M. L. F., Brambleby, E., Hartley, A. J., Lombardi, A., Mataveli, G., McNorton, J. R., Spuler, F. R., Wessel, J. B., Abatzoglou, J. T., Anderson, L. O., Andela, N., Archibald, S., Armenteras, D., Burke, E., Carmenta, R., Chuvieco, E., & 24 othersClarke, H., Doerr, S. H., Fernandes, P. M., Giglio, L., Hamilton, D. S., Hantson, S., Harris, S., Jain, P., Kolden, C. A., Kurvits, T., Lampe, S., Meier, S., New, S., Parrington, M., Perron, M. M. G., Qu, Y., Ribeiro, N. S., Saharjo, B. H., San-Miguel-Ayanz, J., Shuman, J. K., Tanpipat, V., van der Werf, G. R., Veraverbeke, S. & Xanthopoulos, G., 13 Jun 2024, Copernicus Publications, 124 p.

Research output: Working paper › Preprint

The Influence of Large-Scale Spatial Warming on Jet Stream Extreme Waviness on an Aquaplanet

Batelaan, T. J., Weijenborg, C., Steeneveld, G. J., van Heerwaarden, C. C. & Sinclair, V. A., 2 Feb 2024, ESS Open Archive, 15 p.

Research output: Working paper › Preprint

Open Access

Trends in genome diversity of small populations under a conservation program: a case study of two French chicken breeds

Bortoluzzi, C., Restoux, G., Rouger, R., Desnoues, B., Petitjean, F., Bosse, M. & Tixier-Boichard, M., 23 Feb 2024, BioRxiv.

Research output: Working paper › Preprint

Open Access

Yield and Growth Duration of Maroon rice landraces measured in traditional settings

Pinas, N. M., Tjoe Awie, J., Dongstra, R. E., Maat, H., Schranz, M. E., van de Loosdrecht, M. S. & van Andel, T. R., 5 Jun 2024, 30 p.

Research output: Working paper › Preprint

Open Access

2023

Adaptive Adhesive Production Systems in Zambia

Fajardo, S., Zeekaf, J. R. R., van Andel, T. R., Maombe, C., Nyambe, T., Mudenda, G., Nchimunya Kayuni, M. & Langejans, G. H. J., 28 Jun 2023, SSRN, 46 p.

Research output: Working paper › Preprint

Open Access

Adding machine learning to the MIP toolkit: Predictor importance for hydrological fluxes of Global Hydrological and Land Surface Models

Lyra Fialho Brêda, J. P., Melsen, L. A., Athanasiadis, I. N., van Dijk, A., Siqueira, V. A., Verhoef, A. & Zeng, Y., 28 Sept 2023, ESS Open Archive, 19 p.

Research output: Working paper › Preprint

Open Access

A deep genetic analysis of banana Fusarium wilt pathogens of Cuba in a Latin American and Caribbean diversity landscape

Martinez de la Parte, E., Pérez-Vicente, L., Torres Sanchez, D. E., van Westerhoven, A. C., Meijer, H. J. G., Seidl, M. F. & Kema, G. H. J., 29 Aug 2023, BioRxiv.

Research output: Working paper › Preprint

Open Access

A global reference database in FAOSTAT of cropland nutrient budgets and nutrient use efficiency: nitrogen, phosphorus and potassium, 1961–2020

Ludemann, C. I., Wanner, N., Chivenge, P., Dobermann, A., Einarsson, R., Grassini, P., Gruere, A., Jackson, K., Lassaletta, L., Maggi, F., Obli-Laryea, G., van Ittersum, M. K., Vishwakarma, S., Zhang, X. & Tubiello, F. N., 17 Jul 2023, Earth System Science.

Research output: Working paper › Preprint

Open Access

A rapid method to quantify vein density in C4 plants using starch staining.

Simpson, C. J. C., Singh, P., Sogbohossou, E. O. D., Schranz, M. E. & Hibberd, A. A., Mar 2023, BioRxiv.

Research output: Working paper › Preprint

Open Access

A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia

Scott, T. W., Benito Vaquerizo, S., Zimmerman, J., Bajić, D., Heinken, A., Suarez Diez, M. & Schaap, P. J., 16 Feb 2023, BioRxiv, 32 p. (bioRxiv (Cold Spring Harbor Laboratory)).

Research output: Working paper › Preprint

Open Access

Bioturbation enhances C and N contents on near-surface soils in resource-deficient arid climate regions but shows adverse effects in more temperate climates: 2022-1427

Kraus, D., Brandl, R., Bendix, J., Grigusova, P., Köhler, S., Larsen, A., Pliscoff, P., Übernickel, K. & Farwig, N., 2023, European Geosciences Union.

Research output: Working paper › Preprint

Open Access

Branching responses to pruning in cocoa

Tosto, A., Evers, J. B., Anten, N. P. R. & Zuidema, P. A., 10 Mar 2023, BioRxiv.

Research output: Working paper › Preprint

Open Access

Consequences of alternative stable states for short-term model-based control of cyanobacterial blooms

Jacobs, B., van Voorn, G. A. K., van Heijster, P. J. A. & Hengeveld, G. M., 15 Dec 2023, (Cold Spring Harbor Protocols).

Research output: Working paper › Preprint

Open Access

Coral reef potential connectivity in the southwest Indian Ocean

Vogt-Vincent, N. S., Burt, A. J., van der Ven, R. M. & Johnson, H. L., 23 Nov 2023, BioRxiv.

Research output: Working paper › Preprint

Open Access

Deciduous tundra shrubs shift toward more acquisitive light absorption strategy under climate change treatments

Heim, R. J., Iturrate-Garcia, M., Reji Chacko, M., Karsanaev, S. V., Trofim, M. C., Heijmans, M. & Schaepman-Strub, G., 10 Feb 2023, ESS Open Archive, 19 p.

Research output: Working paper › Preprint

Open Access

DELLA Proteins Recruit the Mediator Complex Subunit MED15 to Co-activate Transcription in Land Plants

Hernández García, J., Serrano-Mislata, A., Lozano-Quiles, M., Úrbez, C., Nohales, M. A., Blanco-Touriñán, N., Peng, H., Ledesma-Amaro, R. & Blázquez, M. A., 1 Nov 2023, BioRxiv.

Research output: Working paper › Preprint

Open Access

Differential bleaching of quartz and feldspar luminescence signals under high turbidity conditions

Mey, J., Schwanghart, W., de Boer, A. M. & Reimann, T., 5 Apr 2023, EGU, (GChron).

Research output: Working paper › Preprint

Open Access

Effect of Spices on the Growth and Detection of Salmonella and Shiga Toxin-Producing Escherichia Coli in ISO Standard Methods

Castelijn, G. A. A., de Lange, L. C. M. & van der Voort, M., 19 Jun 2023, SSRN, 18 p.

Research output: Working paper › Preprint

Open Access

Estimating plastic pollution levels in rivers through harmonized monitoring strategies

van Emmerik, T. H. M., Kirschke, S. J., Schreyers, L., Nath, S., Gortázar Schmidt, C. & Wendt-Pothoff, K., 13 Feb 2023.

Research output: Working paper › Preprint

Open Access

From data on gross activity to the characterization of animal behaviour: which metrics for which purposes

van Dixhoorn, I. D. E., Aubé, L., van Zyl, C. L., de Mol, R. M., van der Werf, J. T. N., Lardy, R., Mialon, M-M., van Reenen, C. G. & Veissier, I., 22 Dec 2023, Zenodo, 22 p.

Research output: Working paper › Preprint

Open Access

From root to shoot; Quantifying nematode tolerance in Arabidopsis thaliana by high-throughput phenotyping of plant development

Willig, J., Sonneveld, D., van Steenbrugge, J. J. M., Deurhof, L., van Schaik, C. C., Teklu, M. G., Goverse, A., Lozano Torres, J. L., Smant, G. & Sterken, M. G., 15 Mar 2023, BioRxiv.

Research output: Working paper › Preprint

Functional copy number variation in SQUALENE EPOXIDASE-LIKE genes affects photosystem II efficiency in Arabidopsis

van Bezouw, R. F. H. M., Nguyen, T. P., van Hoang, N., Vincenzi, E., van Velthoven, R., Zhang, H., Gao, Y., Zhang, W., Jacobi, R., de Snoo, B., Reyes Marquez, F. C., Vazquez Catalá, L., Iqbal, M., Jansen, S., Mumm, R., Harbinson, J., Keurentjes, J. J. B. & Aarts, M. G. M., 21 Sept 2023, BioRxiv.

Research output: Working paper › Preprint

Open Access

GC Insights: Fostering transformative change for biodiversity restoration through transdisciplinary research

Ekberzade, B., Carrasco, R., Izdebski, A., Sofo, A., Larsen, A., Akinyemi, F., Bruckman, V. J., Baker, N., Clark, S. & Hill, C., 15 Aug 2023, EGU, 10 p.

Research output: Working paper › Preprint

Open Access

Genome assembly and analysis of Lactuca virosa; implications for lettuce breeding

Xiong, W., van Workum, F. J. M., Berke, L. & Schranz, M. E., May 2023, BioRxiv.

Research output: Working paper › Preprint

Open Access

Global violations of environmentally critical groundwater discharge

Marinelli, B. P. P. & de Graaf, I. E. M., 22 Feb 2023, EGU/Copernicus.

Research output: Working paper › Preprint

Open Access

Highly pathogenic avian influenza causes mass mortality in Sandwich tern (Thalasseus sandvicensis) breeding colonies across northwestern Europe

Knief, U., Bregnballe, T., Alfarwi, I., Ballmann, M., Brenninkmeijer, A., Bzoma, S., Chabrolle, A., Dimmlich, J., Engel, E., Ecology, W., Fischer, K., Hälterlein, B., Haupt, M., Hennig, V., Herrmann, C., in 't Veld, R., Kirchhoff, E., Kirstersson, M., Kuhn, S., Larsson, K., & 30 othersLarsson, R., Lawton, N., Leopold, M. F., Lilipaly, S., Lock, L., Marty, R., Matheve, H., Meissner, W., Morisson, P., Newton, S., Olofsson, P., Packmor, F., Pedersen, K. T., Redfern, C., Scarton, F., Schenk, F., Scher, O., Serra, L., Smith, J., Smith, W., Sterup, J., Stienen, E., Strassner, V., Valle, R. G., van Bemmelen, R. S. A., Veen, J., Vervaeke, M., Weston, E., Wojcieszek, M. & Forest, R., 2023, BioRxiv.

Research output: Working paper › Preprint

How Many Microplastics Do You Need to (Sub)Sample?

Cowger, W., Markley, L. A., Moore, S., Gray, A. B., Upadhyay, K. & Koelmans, A. A., 3 Oct 2023, SSRN, 22 p.

Research output: Working paper › Preprint

Open Access

Impact of diet on jejunal microbiota composition during broiler development with special focus on Enterococcus hirae and Enterococcus faecium

Stege, P. B., Schokker, D., Harders, F. L., Kar, S. K., Stockhofe, N., Perricone, V., Rebel, J. M. J., de Jong, I. C. & Bossers, A., 5 Apr 2023, BioRxiv.

Research output: Working paper › Preprint

Open Access

Insure or Unsure? The Role of Negative and Positive Basis Risk in Weather Index Insurance Uptake in Kenya

Vosper, S. & Cecchi, F., 27 Jul 2023, SSRN, 49 p.

Research output: Working paper › Preprint

Open Access

Interaction between mutation type and gene pleiotropy drives parallel evolution in the laboratory

Ruelens, P., Wynands, T. & de Visser, J. A. G. M., 20 Jan 2023, BioRxiv, (Cold Spring Harbor Protocols).

Research output: Working paper › Preprint

Open Access

Investigating Fair Data Management Practices in Eu-Funded Agri-Food and Rural Development Multi-Actor Projects

Kumar, P., Hendriks, T., Panoutsopoulos, H. & Brewster, C., 28 Jul 2023, SSRN, 27 p.

Research output: Working paper › Preprint

Open Access

Iterative Mapping of Probabilities (IMP): A data fusion framework for generating accurate land cover maps that match area statistics

Witjes, M., Herold, M. & de Bruin, S., 25 Oct 2023, 39 p.

Research output: Working paper › Preprint

Open Access

Joint 2D to 3D image registration workflow for comparing multiple slice photographs and CT scans of apple fruit with internal disorders

Schut, D. E., Wood, R. M., Trull, A. K., Schouten, R. E., van Liere, R., van Leeuwen, T. & Batenburg, K. J., 3 Oct 2023, arXiv, 20 p.

Research output: Working paper › Preprint

Open Access

Live-cell imaging reveals the trade-off between target search flexibility and efficiency for Cas9 and Cas12a

Olivi, L., Bagchus, C. R. P., Pool, V. D., Bekkering, E. T., Speckner, K. S. A., Wu, W. Y., Martens, K. J. A., van der Oost, J., Staals, R. H. J. & Hohlbein, J. C., 17 Nov 2023, BioRxiv.

Research output: Working paper › Preprint

Open Access

Luminescence dating approaches to reconstruct the formation of plaggic anthrosols

Choi, J., van Beek, R., Chamberlain, E. L., Reimann, T., Smeenge, H., van Oorschot, A. M. H. & Wallinga, J., 8 Nov 2023, EGU/Copernicus.

Research output: Working paper › Preprint

Open Access

Wageningen University & Research

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