Wageningen University & Research

  • Droevendaalsesteeg 2, Forum Building, 102

    6708 PB Wageningen

    Netherlands

Research Output 1917 2020

2019

Author Correction: Rapid de novo assembly of the European eel genome from nanopore sequencing reads: Rapid de novo assembly of the European eel genome from nanopore sequencing reads (Scientific Reports, (2017), 7, 1, (7213), 10.1038/s41598-017-07650-6)

Jansen, H. J., Liem, M., Jong-Raadsen, S. A., Dufour, S., Weltzien, F. A., Swinkels, W., Koelewijn, A., Palstra, A. P., Pelster, B., Spaink, H. P., van den Thillart, G. E., Dirks, R. P. & Henkel, C. V., 22 May 2019, In : Scientific Reports. 9, 7911.

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access
Nanopores
Eels
Publications
Nucleotides
Genome

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodríguez, A. M., Chase, J., Cope, E. K. & 92 othersDa Silva, R., Diener, C., Dorrestein, P. C., Douglas, G. M., Durall, D. M., Duvallet, C., Edwardson, C. F., Ernst, M., Estaki, M., Fouquier, J., Gauglitz, J. M., Gibbons, S. M., Gibson, D. L., Gonzalez, A., Gorlick, K., Guo, J., Hillmann, B., Holmes, S., Holste, H., Huttenhower, C., Huttley, G. A., Janssen, S., Jarmusch, A. K., Jiang, L., Kaehler, B. D., Kang, K. B., Keefe, C. R., Keim, P., Kelley, S. T., Knights, D., Koester, I., Kosciolek, T., Kreps, J., Langille, M. G. I., Lee, J., Ley, R., Liu, Y. X., Loftfield, E., Lozupone, C., Maher, M., Marotz, C., Martin, B. D., McDonald, D., McIver, L. J., Melnik, A. V., Metcalf, J. L., Morgan, S. C., Morton, J. T., Naimey, A. T., Navas-Molina, J. A., Nothias, L. F., Orchanian, S. B., Pearson, T., Peoples, S. L., Petras, D., Preuss, M. L., Pruesse, E., Rasmussen, L. B., Rivers, A., Robeson, M. S., Rosenthal, P., Segata, N., Shaffer, M., Shiffer, A., Sinha, R., Song, S. J., Spear, J. R., Swafford, A. D., Thompson, L. R., Torres, P. J., Trinh, P., Tripathi, A., Turnbaugh, P. J., Ul-Hasan, S., van der Hooft, J. J. J., Vargas, F., Vázquez-Baeza, Y., Vogtmann, E., von Hippel, M., Walters, W., Wan, Y., Wang, M., Warren, J., Weber, K. C., Williamson, C. H. D., Willis, A. D., Xu, Z. Z., Zaneveld, J. R., Zhang, Y., Zhu, Q., Knight, R. & Caporaso, J. G., 9 Aug 2019, In : Nature Biotechnology.

Research output: Contribution to journalComment/Letter to the editorAcademic

HTML
Microbiota

Author Correction: The potential of future foods for sustainable and healthy diets

Parodi, A., Leip, A., De Boer, I. J. M., Slegers, P. M., Ziegler, F., Temme, E. H. M., Herrero, M., Tuomisto, H., Valin, H., Van Middelaar, C. E., Van Loon, J. J. A. & Van Zanten, H. H. E., 1 Apr 2019, In : Nature Sustainability. 2, 4, p. 342-347 6 p.

Research output: Contribution to journalComment/Letter to the editorAcademic

healthy diet
Nutrition
Land use
land use
energy use
1 Citation (Scopus)

Automated body condition scoring of dairy cows using 3-dimensional feature extraction from multiple body regions

Song, X., Bokkers, E. A. M., van Mourik, S., Groot Koerkamp, P. W. G. & van der Tol, P. P. J., May 2019, In : Journal of Dairy Science. 102, 5, p. 4294-4308

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Body Regions
body regions
body condition
dairy cows
cows
1 Citation (Scopus)

Automated Testing of Simulation Software in the Aviation Industry: An Experience Report

Garousi, V., Tasli, S., Sertel, O., Tokgoz, M., Herkiloglu, K., Arkin, H. F. E. & Bilir, O., 1 Jul 2019, In : IEEE Software. 36, 4, p. 63-75 8356168.

Research output: Contribution to journalArticleAcademicpeer-review

Aviation
Automation
Testing
Industry

Automated tracking of individual activity of broiler chickens

van der Sluis, M., de Klerk, B., Rodenburg, T. B., de Haas, Y., Hijink, T. & Ellen, E. D., 2019, Proceedings of the 53rd Congress of the International Society for Applied Ethology (ISAE): Animal Lives Worth Living. Newberry, R. C. & Braastad, B. O. (eds.). Wageningen, The Netherlands: Wageningen Academic Publishers, p. 288-288

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Automatic apple tree blossom estimation from uav rgb imagery

Tubau Comas, A., Valente, J. & Kooistra, L., 4 Jun 2019, ISPRS Geospatial Week 2019, 10–14 June 2019, Enschede, The Netherlands. ISPRS, p. 631-635 5 p. (International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences - ISPRS Archives; vol. XLII-2/W13).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Open Access
Orchards
imagery
Fruits
Pixels
flowering

Autonomy and ownership in Indian CSOs

van Wessel, M. G. J. & Balasubramanian, R., 29 Jan 2019

Research output: Non-textual formWeb publication/siteProfessional

Open Access

A value chain perspective to the control of avian influenza in the Western Java poultry sector

Indrawan, D., 2019, Wageningen: Wageningen University. 166 p.

Research output: Thesisinternal PhD, WUAcademic

A verified habitat suitability model for the intertidal rock oyster, Saccostrea cucullata

Chowdhury, M. S. N., Wijsman, J. W. M., Hossain, M. S., Ysebaert, T. & Smaal, A. C., 11 Jun 2019, In : PLoS ONE. 14, 6, e0217688.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Saccostrea cucullata
Ostreidae
oysters
Ecosystem
rocks

A versatile shear cell for investigation of structure of food materials under shear

Velichko, E., Tian, B., Nikolaeva, T., Koning, J., van Duynhoven, J. & Bouwman, W. G., 5 Apr 2019, In : Colloids and Surfaces A: Physicochemical and Engineering Aspects. 566, p. 21-28

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Neutron scattering
food
shear
X ray scattering
Geometry
equilibrium model
egg production
Ovum
Shock
markets

Avian ecological epigenetics: pitfalls and promises

Sepers, B., van den Heuvel, K., Lindner, M., Viitaniemi, H., Husby, A. & van Oers, K., 10 Jul 2019, In : Journal of Ornithology.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
epigenetics
birds
mammals
wild birds
infancy

Avoiding feed-food competition in practice; Environmental impact assessment of a novel egg production system

van Hal, O., Weijenberg, A., de Boer, I. J. M. & van Zanten, H. H. E., 18 Mar 2019, Trade-Offs in Science - Keeping the balance: Abstracts of the WIAS Science Day 2019. Wageningen University & Research, p. 42-43

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

environmental assessment
opportunity costs
egg production
production technology
life cycle assessment

A Worm's World: Ecological Flexibility Pays Off for Free-Living Nematodes in Sediments and Soils

Schratzberger, M., Holterman, M., van Oevelen, D. & Helder, J., 4 Sep 2019, In : Bioscience. 9, biz086.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
free-living nematodes
Soil
sediments
Ecosystem
soil

Axial compressive bearing capacity of piles in oil-contaminated sandy soil using FCV

Mohammadi, A., Ebadi, T., Eslami, A. & van der Zee, S. E. A. T. M., 2019, In : Marine Georesources & Geotechnology. 37, 2, p. 164-179

Research output: Contribution to journalArticleAcademicpeer-review

Bearing capacity
bearing capacity
sandy soil
Piles
pile

Baby's first bites: a randomized controlled trial to assess the effects of vegetable-exposure and sensitive feeding on vegetable acceptance, eating behavior and weight gain in infants and toddlers

van der Veek, S. M. C., de Graaf, C., de Vries, J. H. M., Jager, G., Vereijken, C. M. J. L., Weenen, H., van Winden, N., van Vliet, M. S., Schultink, J. M., de Wild, V. W. T., Janssen, S. & Mesman, J., 1 Aug 2019, In : BMC Pediatrics. 19, 1, 1 p., 266.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Infant Nutritional Physiological Phenomena
Feeding Behavior
Bites and Stings
Vegetables
Weight Gain

Bacterial community dynamics in lait caillé, a traditional product of spontaneous fermentation from Senegal

Groenenboom, A. E., Parker, M. E., De Vries, A., de Groot, S., Zobrist, S., Mansen, K., Milani, P., Kort, R., Smid, E. J. & Schoustra, S. E., 10 May 2019, In : PLoS ONE. 14, 5, e0215658.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Senegal
Probiotics
bacterial communities
Fermentation
probiotics
2 Citations (Scopus)

Baculovirus per os infectivity factor complex: Components and assembly

Wang, X., Shang, Y., Chen, C., Liu, S., Chang, M., Zhang, N., Hu, H., Zhang, F., Zhang, T., Wang, Z., Liu, X., Lin, Z., Deng, F., Wang, H., Zou, Z., Vlak, J. M., Wang, M. & Hu, Z., 1 Mar 2019, In : Journal of Virology. 93, 6, e02053-18.

Research output: Contribution to journalArticleAcademicpeer-review

Baculoviridae
Virion
pathogenicity
Insects
Multiprotein Complexes
1 Citation (Scopus)

Balanced harvest: concept, policies, evidence, and management implications

Zhou, S., Kolding, J., Garcia, S. M., Plank, M. J., Bundy, A., Charles, A., Hansen, C., Heino, M., Howell, D., Jacobsen, N. S., Reid, D. G., Rice, J. C. & van Zwieten, P. A. M., Sep 2019, In : Reviews in Fish Biology and Fisheries. 29, 3, p. 711-733

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
fisheries
ecosystems
fishery
economic costs
fishing
Globodera pallida
cyst nematodes
cell death
potatoes
potato protein
3 Citations (Scopus)

Balance of Emission and Dynamical Controls on Ozone During the Korea-United States Air Quality Campaign From Multiconstituent Satellite Data Assimilation

Miyazaki, K., Sekiya, T., Fu, D., Bowman, K. W., Kulawik, S. S., Sudo, K., Walker, T., Kanaya, Y., Takigawa, M., Ogochi, K., Eskes, H., Boersma, K. F., Thompson, A. M., Gaubert, B., Barre, J. & Emmons, L. K., 16 Jan 2019, In : Journal of Geophysical Research: Atmospheres. 124, 1, p. 387-413

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
air quality
Korea
Ozone
assimilation
Air quality

Balancing food production and biodiversity conservation

Kok, A. & Muscat, A., 27 Jun 2019

Research output: Non-textual formWeb publication/siteProfessional

Open Access

Banana leaf pruning to facilitate annual legume intercropping as an intensification strategy in the East African highlands

Ocimati, W., Ntamwira, J., Groot, J. C. J., Taulya, G., Tittonell, P., Dhed'a, B., van Asten, P., Vanlauwe, B., Ruhigwa, B. & Blomme, G., Oct 2019, In : European Journal of Agronomy. 110, 125923.

Research output: Contribution to journalArticleAcademicpeer-review

intercropping
pruning
bananas
highlands
legumes

Barbarie o justicia en la Patagonia occidental: Las violencias coloniales en el ocaso del pueblo kawésqar, finales del siglo XIX e inicios del siglo XX

Harambour, A. & Ruiz, J. B., 1 Jan 2019, In : Historia Critica. 2019, 71, p. 25-48

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
barbarism
twilight
violence
justice
ethnic conflict

Baseline and power analyses for the assessment of beach litter reductions in the European OSPAR region

Schulz, M., Walvoort, D. J. J., Barry, J., Fleet, D. M. & van Loon, W. M. G. M., 1 May 2019, In : Environmental Pollution. 248, p. 555-564 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Paris
Beaches
Marine pollution
Surveys and Questionnaires
Plastics

Basic Phytochrome B Calculations

Smith, R. W. & Fleck, C., 18 Jul 2019, Phytochromes: Methods and Protocols. Hiltbrunner, A. (ed.). Humana Press Inc., p. 121-133 13 p. (Methods in Molecular Biology; vol. 2026).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Phytochrome B
Phytochrome
Boidae
Plant Development
Cell Nucleus Active Transport

Basisregistratie Ondergrond (BRO) - actualisatie bodemkaart: Herkartering van de bodem in Eemland

Brouwer, F. & Walvoort, D. J. J., 2019, Wageningen: Wettelijke Onderzoekstaken Natuur & Milieu. 39 p. (WOt-technical report; no. 155)

Research output: Book/ReportReportProfessional

Open Access

Bayesian mechanistic modeling of thermodynamically controlled volatile fatty acid, hydrogen and methane production in the bovine rumen

van Lingen, H. J., Fadel, J. G., Moraes, L. E., Bannink, A. & Dijkstra, J., 7 Nov 2019, In : Journal of Theoretical Biology. 480, p. 150-165 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Volatile fatty acids
Bayesian Modeling
hydrogen production
Volatile Fatty Acids
Rumen
gender relations
Guatemala
beauty
gender
fieldwork

Bedreigingen en kansen van vrijkomende agrarische bebouwing

Kuiper, P. P., Both, M. & Gies, T. J. A., Jun 2019, In : De Landeigenaar. 65, 2, p. 10-11

Research output: Contribution to journalArticleProfessional

Bedrijfsplan aanpak van vogelmijt bij leghennen

van Niekerk, T. G. C. M. & Mul, M. F., 2019, Wageningen: Wageningen University & Research. 16 p.

Research output: Book/ReportReportProfessional

Open Access

Bedrijfsuitkomsten in de Nederlandse particuliere bosbouw over 2017

Silvis, H. J. & Voskuilen, M. J., May 2019, Wageningen: Wageningen Economic Research. 49 p. (Wageningen Economic Research rapport; no. 2019-048)

Research output: Book/ReportReportProfessional

3 Citations (Scopus)

Beerkan multi-runs for characterizing water infiltration and spatial variability of soil hydraulic properties across scales

Lassabatere, L., Di Prima, S., Angulo-Jaramillo, R., Keesstra, S. & Salesa, D., 1 Jan 2019, In : Hydrological Sciences Journal. 64, 2, p. 165-178

Research output: Contribution to journalArticleAcademicpeer-review

hydraulic property
infiltration
transect
hydraulics
soil

Behavioral patterns of two fiddler crab species Uca rapax and Uca tangeri in a seminatural mangrove system

van Himbeeck, R. A. F., Huizinga, W., Roessink, I. & Peeters, E. T. H. M., Jul 2019, In : Zoo Biology. 38, 4, p. 343-354

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
crabs
zoos
copulation
tides
Uca

Behavioural economics : assessing food waste innovations diffusion through ABM models - insights from Italy and the Netherlands

Masotti, M., Aramyan, L., Logatcheva, K., Piras, S., Righi, S., Vittuari, M. & Setti, M., 2019, Netherlands: REFRESH. 43 p.

Research output: Book/ReportReportProfessional

Open Access

Behaviour and sociability of yaks among different regions in Bhutan

Dorji, N., Groot Koerkamp, P. W. G., Derks, M. & Bokkers, E., 5 Aug 2019, Animal lives worth living. Newberry, R. C. & Braastad, B. O. (eds.). Wageningen Academic Publishers, p. 265-265 1 p.

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Open Access

Beheer-op-Maat: Maatwerk als basis voor goed weidevogelbeheer

Manhoudt, A. & Melman, T. C. P., Jun 2019, In : Vakblad Natuur Bos Landschap. 156, p. 20-23

Research output: Contribution to journalArticleProfessional

Beheersen van Listeria: Risicoproducten onder de loep

Verkleij, T. J. & van Bokhorst-van de Veen, H., May 2019, In : Voedingsindustrie : vakblad. 26, mei, p. 14-17

Research output: Contribution to journalArticleProfessional

Open Access

Beheersen van schimmelziekten in appel- en perenboomgaarden en bewaarcellen

Wenneker, M., May 2019, In : Gewasbescherming. 50, 3, p. 80-82

Research output: Contribution to journalArticleProfessional

Open Access

Beïnvloeding van de ammoniakemissie uit melkveestallen met roostervloer door beweiding: onderzoek op Dairy Campus

van Dooren, H. J. C., Ogink, N. W. M., van Riel, J. W., Mosquera, J. & Zonderland, J. L., 2019, Wageningen: Wageningen Livestock Research. 39 p. (Wageningen Livestock Research rapport; no. 1130)

Research output: Book/ReportReportProfessional

Open Access

Beleidsevaluatie Diergezondheidsfonds

Bergevoet, R., de Lauwere, C. & van Asseldonk, M., 2019, Wageningen: Wageningen Economic Research. 69 p. (Wageningen Economic Research rapport; no. 2019-023)

Research output: Book/ReportReportProfessional

Belowground consequences of intracontinental range-expanding plants and related natives in novel environments

Manrubia, M., Snoek, L. B., Weser, C., Veen, G. F. & Van Der Putten, W. H., 18 Mar 2019, In : Frontiers in Microbiology. 10, MAR, 505.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Population Groups
Soil
Food
Rhizosphere
Climate

Benchmarking nutritional water productivity of twenty vegetables - A review

Nyathi, M. K., Mabhaudhi, T., van Halsema, G. E., Annandale, J. G. & Struik, P. C., 20 Jul 2019, In : Agricultural Water Management. 221, p. 248-259

Research output: Contribution to journalReview articleAcademicpeer-review

benchmarking
vegetable
vegetables
productivity
water

Benchmarking of Regression Algorithms and Time Series Analysis Techniques for Sales Forecasting

Catal, C., Ece, K., Arslan, B. & Akbulut, A., 31 Jan 2019, In : Balkan Journal of Electrical & Computer Engineering. 7, 1, p. 20-26

Research output: Contribution to journalArticleAcademicpeer-review

Time series analysis
Benchmarking
Sales
Decision trees
Learning systems