Research Output 1988 2019

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2019

Characterising permanent grassland-based farming systems in Europe

Korevaar, H., Sacco, D., Ravetto Enri, S., Lombardi, G., ten Berge, H. F. M., Bufe, C., Whittingham, M. J., Smith, P., Vanwalleghem, T., Lellei-kovács, E., Stypinski, P., Hejduk, S., Tonn, B. & Newell Price, P. J., 2019, Improving sown grasslands through breeding and management. Wageningen Academic Publishers, p. 164-166 (Grassland Science in Europe; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Computational Prediction of Functional MicroRNA–mRNA Interactions

Saçar Demirci, M. D., Yousef, M. & Allmer, J., 12 Jan 2019, Computational Biology of Non-Coding RNA. New York: Springer, p. 175-196 (Methods in Molecular Biology; vol. 1912).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

MicroRNAs
Messenger RNA
Proteins
Phenotype

Conclusion

Wehrens, H. R. M. J. & Salek, R., 19 Aug 2019, Metabolomics: Practical Guide to Design and Analysis. Wehrens, R. & Salek, R. (eds.). 1st ed. New York: Chapman and Hall, 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

metabolomics
computer science
mathematics and statistics
chemistry
eyes

General Framing of Low-, Mid-, and High-Level Data Fusion With Examples in the Life Sciences

Smolinska, A., Engel, J., Szymanska, E., Buydens, L. & Blanchet, L., 2019, Data Fusion Methodology and Applications. Elsevier Ltd, Academic Press, p. 51-79 29 p. (Data Handling in Science and Technology; vol. 31).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Life sciences
Data Fusion
Data fusion
Gas Chromatography
Mass Spectrometry

Measurement Technologies

Yanes, O., Hollywood, K., Mumm, R., Vinaixa, M., Rankin, N., Wehrens, H. R. M. J. & Salek, R., 19 Aug 2019, Metabolomics: Practical Guide to Design and Analysis. Wehrens, R. & Salek, R. (eds.). 1st ed. New York: Chapman and Hall, 38 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Mass spectrometry
Capillary electrophoresis
Liquid chromatography
Metabolites
Ultraviolet spectroscopy

Statistics: The Essentials

Wehrens, H. R. M. J. & Franceschi, P., 19 Aug 2019, Metabolomics: Practical Guide to Design and Analysis. Wehrens, R. & Salek, R. (eds.). 1st ed. New York: Chapman and Hall, 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

multivariate analysis
visualization
software
statistics
method

Study Design and Preparation

Franceschi, P., Yanes, O. & Wehrens, H. R. M. J., 19 Aug 2019, Metabolomics: Practical Guide to Design and Analysis. Wehrens, R. & Salek, R. (eds.). 1st ed. New York: Chapman and Hall, 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

preparation
muscles
liver

Use of biological agents in fruit tree disease management

Köhl, J., 2019, Integrated management of insect pests and diseases of tree fruit. Xu, X. & Fountain, M. (eds.). Burleigh Dodds Science Publishing Limited

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2018
3 Citations (Scopus)

3C in maize and arabidopsis

Weber, B., Jamge, S. & Stam, M., 2018, Plant Chromatin Dynamics: Methods and Protocols. Humana Press Inc., p. 247-270 (Methods in Molecular Biology; vol. 1675).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Arabidopsis
Zea mays
Chromosomes
Genome
Research

Allium genetic resources

Keller, E. R. J. & Kik, C., 2018, The Allium genomes. Shigyo, M., Khar, A. & Abdelrahman, M. (eds.). p. 23-52 (Compendium of Plant Genomes).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Allium
genetic resources
information systems
germplasm conservation
germplasm

Crop protection: Pest and Disease Management

Vallad, G. E., Messelink, G. J. & Smith, H. A., 2018, Tomatoes. Heuvelink, E. (ed.). 2nd ed. CABI, p. 207-257 (Crop Production Science in Horticulture; vol. 13).

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

Diseño conceptual, selección y prueba de concepto de microorganismos biocontroladores

Cotes, A. M., Fargetton, X. & Köhl, J., 2018, Control biológico de fitopatógenos, insectos y ácaros: Volumen 2: Aplicaciones y perspectivas. Cotes, A. M. (ed.). Mosquera, Colombia, p. 594-627

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Open Access
Microorganisms

Does microbial metabolism trigger increase of grassland soil carbon stocks upon mineral fertilization?

Poeplau, C., Zopf, D., Greiner, B., Geerts, R. H. E. M., Korevaar, H., Thumm, U., Don, A., Heidkamp, A. & Flessa, H., 2018, European Geosciences Union. Vol. 20. p. 1 (Geophysical Research Abstracts Vol. 20, EGU2018-10033, 2018).

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

Open Access

Environmental benefits of farm- and district-scale crop-livestock integration: a European perspective

Leterme, P., Nesme, T., Regan, J. T. & Korevaar, H., 2018, Agroecosystem diversity: Reconciling contemporary agriculture and environment quality. Lemaire, G., César De Faccio Carvalho, P., Kronberg, S. & Recous, S. (eds.). Academic Press, p. 335-349

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

ecosystem services
livestock
farms
crops
economic performance

Greenhouse Tomato Production

Kubota, C., de Gelder, A. & Peet, M. M., Aug 2018, Tomatoes. Heuvelink, E. (ed.). 2nd ed. CABI, p. 276-314 (Crop Production Science in Horticulture; vol. 13).

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

2 Citations (Scopus)

Identification of in planta protein–protein interactions using IP-MS

Jamge, S., Angenent, G. & Bemer, M., 2018, Plant Chromatin Dynamics: Methods and Protocols. Humana Press Inc., p. 315-329 (Methods in Molecular Biology; vol. 1675).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Immunoprecipitation
Chromatin
Mass Spectrometry
Transcription Factors
Protein Interaction Maps
2 Citations (Scopus)

Laser ablation electrospray ionization-mass spectrometry imaging (LAESI-MS) for spatially resolved plant metabolomics

Etalo, D. W., Díez-Simón, C., de Vos, R. C. H. & Hall, R. D., 15 May 2018, Plant Metabolomics: Methods and Protocols. António, C. (ed.). New York: Humana Press Inc., p. 253-267 (Methods in Molecular Biology; vol. 1778).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Metabolomics
Electrospray Ionization Mass Spectrometry
Laser Therapy
Vacuum

New Developments in Molecular Techniques for Breeding in Ornamentals

Smulders, M. J. M. & Arens, P., 26 Jul 2018, Ornamental Crops. Van Huylenbroeck, J. (ed.). Springer, p. 213-230 (Handbook of Plant Breeding; vol. 11).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

breeding methods
ornamental plants
breeding
polyploidy
single nucleotide polymorphism

Organic seed production, certification and availability: Corp Breeding and cultivation:

Groot, S. P. C. & Raaijmakers, M. H. J. E., 2018, Improving organic crop cultivation. Köpke, U. (ed.). Cambridge, UK: Burleigh Dodds Science Publishing Limited

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

seed crop production
certification
breeding
seeds
seed quality
5 Citations (Scopus)

Profiling nucleosome occupancy by MNase-seq: Experimental protocol and computational analysis

Pajoro, A., Muiño, J. M., Angenent, G. C. & Kaufmann, K., 2018, Plant Chromatin Dynamics: Methods and Protocols. Humana Press Inc., p. 167-181 (Methods in Molecular Biology; vol. 1675).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Micrococcal Nuclease
Nucleosomes
Genome
Chromatin
Digestion
2 Citations (Scopus)

Unraveling the complex epigenetic mechanisms that regulate gene activity

Bemer, M., 2018, Plant Chromatin Dynamics. Humana Press Inc., p. 205-231 (Methods in Molecular Biology; vol. 1675).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Epigenomics
Genes
Transcription Factors
Histone Code
Nucleic Acid Conformation
2017

AgroEcological Transitions: Changes and breakthroughs in the making

van Mierlo, B. C., Augustyn, A. M., Elzen, B. & Barbier, M., 2017, AgroEcological Transitions: Changes and Breakthroughs in the Making. Elzen, B., Augustyn, A. M., Barbier, M. & van Mierlo, B. (eds.). Wageningen University & Research, p. 9-16

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Open Access

Biosynthesis, localization and ecological role of pyrethrins and linked secondary metabolites in pyrethrum

Jongsma, M. A. & Ramirez, A., 2017, 2nd International Symposium on Pyrethrum. International Society for Horticultural Science, Vol. 1169. p. 101-111 (Acta Horticulturae; vol. 1169).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Tanacetum
pyrethrins
secondary metabolites
biosynthesis
metabolites
2 Citations (Scopus)

Circular economy and economic viability of aquaponic systems: Comparing urban, rural and peri-urban scenarios under Dutch conditions

Stadler, M. M., Baganz, D., Vermeulen, T. & Keesman, K. J., 30 Oct 2017, Proceedings of ICESC2015: Hydroponics and Aquaponics at the Gold Coast. International Society for Horticultural Science, p. 101-114 (Acta Horticulturae; vol. 1176).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

aquaponics
economic sustainability
raw foods
food miles
primary energy

Conclusion: a Curiosity Cabinet of Agro-Ecological Transition Studies

Barbier, M., Elzen, B., van Mierlo, B. C. & Augustyn, A. M., 2017, AgroEcological Transitions: Changes and Breakthroughs in the Making. Elzen, B., Augustyn, A. M., Barbier, M. & van Mierlo, B. (eds.). Wageningen University & Research, p. 283-295

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Open Access

Contrasting hydrologic response in the cuesta landscapes of Luxembourg

Pfister, L., Hissler, C., Iffly, J. F., Coenders, M., Teuling, R., Arens, A. & Cammeraat, L. H., 24 Oct 2017, The Luxembourg Gutland Landscape. Springer International Publishing Switzerland, p. 73-87

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Luxembourg
Rivers
Soil
Geology
catchment

Cultivation and usage in the world

Haverkort, A. J., Huachun, G. & Iwama, K., 29 Mar 2017, Cultivation and Usage of Tuber and Root Crops. Iwama, K. (ed.). Crop Science Society of Japan, Vol. 6. p. 35-47

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Current Overview of Mushroom Production in the World

Royse, D. J., Baars, J. J. P. & Tan, Q., 2017, Edible and Medicinal Mushrooms: Technology and Applications. Zied, D. C. & Pardo-Giménez, A. (eds.). Wiley-Blackwell, 2

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

mushroom growing
mushrooms
Lentinula
Flammulina
Flammulina velutipes

Detection of Pectobacterium spp. and Dickeya spp. in Potato Tubers

de Boer, S. H., Charkowski, A. O. & van der Wolf, J. M., 2017, Detection of Plant-Pathogenic Bacteria in Seed and other planting material. Fatmi, MB., Walcott, R. R. & Schaad, N. W. (eds.). second edition ed. APS Press, p. 243- 247 33

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Pectobacterium
Dickeya
stem rot
tubers
potatoes

Diseases of Lily

Chastagner, G. A., van Tuyl, J. M., Verbeek, M., Miller, W. & Westerdahl, B. B., 7 Mar 2017, Handbook of Florists' Crops Diseases, Handbook of Plant Disease Management. McGovern, R. J. & Elmer, W. H. (eds.). Springer International Publishing, 61 p. (Handbook of Plant Disease Management).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Lilium
bulbs
cut flowers
crops
Netherlands
2 Citations (Scopus)

Effectoromics-based identification of cell surface receptors in potato

Domazakis, E., Lin, X., Aguilera-Galvez, C., Wouters, D., Bijsterbosch, G., Wolters, P. J. & Vleeshouwers, V. G. A. A., 2017, Plant Pattern Recognition Receptors: Methods and Protocols. Shan, L. & He, P. (eds.). Humana Press Inc., Vol. 1578. p. 337-353 (Methods in Molecular Biology; vol. 1578).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Phytophthora infestans
Cell Surface Receptors
Solanum tuberosum
Breeding
Potexvirus

Eurodairy, a European thematic network for dairy farming

Keatinge, R. & Korevaar, H., 2017, Grassland resources for extensive farming systems in marginal lands: major drivers and future scenarios: Proceedings of the 19 th Symposium of the European Grassland Federation Alghero, Italy 7-10 May 2017. Porqueddu, C., Franca, A., Lombardi, G., Molle, G., Peratoner, G. & Hopkins, A. (eds.). Wageningen: Wageningen Academic Publishers, p. 170-172 (Grassland Science in Europe; vol. 22).

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

Open Access

Forest resource projection tools at the European level

Schelhaas, M., Nabuurs, G. J., Verkerk, P. J., Hengeveld, G. M., Packalen, T., Sallnäs, O., Pilli, R., Grassi, J., Forsell, N., Frank, S., Gusti, M. & Havlik, P., 2017, Forest inventory-based projection systems for wood and biomass availability. Barreiro, S., Schelhaas, M-J., McRoberts, R. E. & Kändler, G. (eds.). Springer, p. 49-68 (Managing forest ecosystems; vol. 29).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Forest resources
European Union
Methodology
Resources
European countries

Fungi as Food

Baars, J. J. P., 2017, Fungi: Biology and Applications. Kavanagh, K. (ed.). 3rd ed. Maynooth, Ireland: Wiley-Blackwell, 6

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

mushrooms
fungi
vitamin D
Flammulina
Auricularia polytricha

Hydroponically grown leek: Slowly growing to maturity

van Os, E. A., van Weel, P. A., Wilms, J. A. M., Bruins, M. A., Verhoeven, J. & van Wijk, K., 30 Oct 2017, Proceedings of the ICESC2015: Hydroponics and Aquaponics at the Gold Coast. International Society for Horticultural Science, p. 79-86 (Acta Horticulturae; vol. 1176).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

leeks
harvest date
sandy soils
signs and symptoms (plants)
nutrient solutions

Managing Variant Calling Files the Big Data Way: Using HDFS and Apache Parquet

Boufea, A., Finkers, H. J., van Kaauwen, M. P. W., Kramer, M. R. & Athanasiadis, I. N., 2017, BDCAT '17 Proceedings of the Fourth IEEE/ACM International Conference on Big Data Computing, Applications and Technologies. ACM, p. 219-226

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Open Access
Electric sparks
Big data
2 Citations (Scopus)

Molecular diagnostics in plant health

Bonants, P. J. M. & te Witt, R., 2017, Moleculair diagnostics: part 2: Clinical, Veterinary, Agrobotanical and Food Safety Applications. van Pelt-Verkuil, E., van Leeuwen, W. B. & te Witt, R. (eds.). Singapore: Springer, p. 175-202

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

plant health
plant pathogens
Netherlands
plant products
plant diseases and disorders

Need for clean water and recirculation to reduce emissions of plant protection products from soilless cultivation

Vermeulen, T., van Os, E. A., van der Linden, A. M. A. & Wipfler, E. L., 30 Oct 2017, Proceedings of the ICESC2015: Hydroponics and Aquaponics at the Gold Coast. International Society for Horticultural Science, p. 87-93 7 p. (Acta Horticulturae; vol. 1176).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Open Access
plant protection
surface water
sodium
water
water flow
9 Citations (Scopus)

Non-Chemical Weed Management

Melander, B., Liebman, M., Davis, A. S., Gallandt, E. R., Bàrberi, P., Moonen, A. C., Rasmussen, J., van der Weide, R. & Vidotto, F., 26 Jun 2017, Weed Research: Expanding Horizons. Hatcher, P. E. & Froud-Williams, R. J. (eds.). Wiley, p. 245-270

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Weed Control
weed control
Herbicides
Agricultural Crops
weeds

Portfolio of promises: Designing and testing a new tool to stimulate transition towards sustainable agriculture

Elzen, B., Janssen, A. P. H. M. & Bos, A. P., 2017, AgroEcological Transitions: Changes and Breakthroughs in the Making. Elzen, B., Augustyn, A. M., Barbier, M. & van Mierlo, B. (eds.). Wageningen University & Research, p. 143-161

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Open Access

Practical applications and speciality crops

Koren, A., Klein, E., Dieleman, A., Janse, J., Rouphael, Y., Colla, G. & Mourão, I., 1 Jan 2017, Vegetable Grafting: Principles and Practices. CABI International, p. 245-270

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Prospects of hydroponics and protected cultivation in semi-arid regions piloted in Algeria

Van Os, E. A., Bruins, M. A., Ruijs, M. N. A., Sapounas, A. & Speetjens, B., 30 Oct 2017, ICESC2015: Hydroponics and Aquaponics at the Gold Coast. International Society for Horticultural Science, Vol. 1176. p. 65-71 (Acta Horticulturae; vol. 1176).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

protected cultivation
Algeria
hydroponics
arid zones
greenhouses

Prunus fruit juices

Toydemir, G., Boyacioglu, D., Hall, R. D., Beekwilder, M. J. & Capanoglu, E., 26 May 2017, Innovative Technologies in Beverage Processing. Aguiló-Aguayo, I. & Plaza, L. (eds.). Chichester UK: Wiley, p. 59-77

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Prunus
fruit juices
Prunus cerasus
Prunus avium
pasteurization

Recent advances in soilless culture in Europe

Van Os, E. A., 30 Oct 2017, ICESC2015: Hydroponics and Aquaponics at the Gold Coast. International Society for Horticultural Science, Vol. 1176. p. 1-8 8 p. (Acta Horticulturae; vol. 1176).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

soilless culture
surface water
plant protection
water
laws and regulations

Recommendations for the use of grafted plants in greenhouses. The case of the Netherlands

Dieleman, J. A. & Janse, J., 2017, Vegetable Grafting: Principles and Practices . Colla, G., Pérez-Alfocea, F. & Schwarz, D. (eds.). Wallingford: CABI Publishing Wallingford, p. 245-269

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Rethinking the role of aquatic ecology in hydroponic cultivation

Vermeulen, T., Streminska, M., Beerens, N., Eveleens, B. & Blok, C., 30 Oct 2017, Proceedings of the ICESC2015: Hydroponics and Aquaponics at the Gold Coast. Duggan-Jones, D. & Nichols, M. A. (eds.). International Society for Horticultural Science, p. 115-121 (Acta Horticulturae; vol. 1176).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

hydroponics
ecology
population dynamics
root diseases
pathogens

Robotic Seeding: Economic Perspectives

Pedersen, S. M., Fountas, S., Sørensen, C. G., van Evert, F. K. & Blackmore, B. S., 16 Nov 2017, Precision Agriculture: Technology and Economic Perspectives. Pedersen, S. M. & Lind, K. M. (eds.). Cham: Springer International Publishing, p. 167-179 (Progress in Precision Agriculture).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

robots
sowing
economics
sugar beet
seeds

Robust and confident predictor selection in metabolomics

Hageman, J. A., Engel, B., de Vos, C. H., Mumm, R., Hall, R. D., Jwanro, H., Crouzillat, D., Spadone, C. & van Eeuwijk, F. A., 2017, Statistical Analysis of Proteomics, Metabolomics, and Lipidomics Data Using Mass Spectrometry; Frontiers in Probability and the Statistical Sciences. Datta, S. & Mertens, B. J. A. (eds.). Springer, p. 239-257 (Frontiers in Probability and the Statistical Sciences).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

metabolomics
metabolites
chocolate liquor
biomarkers
foods
3 Citations (Scopus)

SELEX-seq: A method to determine DNA binding specificities of plant transcription factors

Smaczniak, C., Angenent, G. C. & Kaufmann, K., 2017, Plant gene regulatory networks: Methods and protocols. Kaufmann, K. & Mueller-Roeber, B. (eds.). Humana Press Inc., Vol. 1629. p. 67-82 (Methods in Molecular Biology - Springer Protocols; vol. 1629).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

SELEX Aptamer Technique
Transcription Factors
DNA
High-Throughput Nucleotide Sequencing
Nucleotide Motifs

Species-specific genome sequence databases: A practical review

van Dijk, A-J., 2017, Plant genomics databases: Methods and Protocols. van Dijk, A. D. J. (ed.). Humana Press Inc., p. 173-181 (Methods in Molecular Biology; vol. 1533).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Genome
Databases
Proteins