Datasets
Transcriptomics datasets for Clostridium autoethanogenum grown on CO in different environmental conditions
Diender, M. (Creator), Koehorst, J. (Creator) & Machado de Sousa, D. (Creator), Wageningen University & Research, 25 Jan 2019
DOI: 10.4121/uuid:b6bd64a9-5bdb-4655-9829-520aa4600987
Dataset
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
Koehorst, J. (Creator), van Dam, J. C. J. (Contributor), van Heck, R. G. A. (Contributor), Saccenti, E. (Contributor), Martins dos Santos, V. (Contributor), Suarez Diez, M. (Contributor) & Schaap, P. (Contributor), Wageningen University & Research, 25 Sep 2018
DOI: 10.4121/uuid:948c10fe-7ea5-47f3-bdb2-d5b0f908820b
Dataset
Expected and observed genotype complexity in prokaryotes: correlation between 16S-rRNA phylogeny and protein domain content
Koehorst, J. (Creator), Schaap, P. (Contributor) & Suarez Diez, M. (Contributor), Wageningen University & Research, 24 Oct 2018
DOI: 10.4121/uuid:37346f1e-f8cf-4112-ba4b-1223a3e4edda
Dataset
Comparative genomic and physiological analysis of Trichococcus species
Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, F. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB12708
Dataset
Listening in on a bacterial/fungal dialog: transcriptional profiling of an antagonistic interaction
Mela, F. (Creator), Leveau, J. H. J. (Creator), van Veen, J. A. (Creator), Fritsche, K. (Creator), de Graaff, L. H. (Creator), van den Berg, M. (Creator) & de Boer, W. (Creator), Wageningen UR, 3 May 2014
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-350/
Dataset
Comparative genomic and physiological analysis of Trichococcus species
Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, F. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB12707
Dataset
Akkermansia transcriptome response to mucin and/or glucose growth medium
Ottman, N. A. (Creator), Davids, M. (Creator), Suarez Diez, M. (Creator), Boeren, S. (Creator), Schaap, P. (Creator), Martins dos Santos, V. (Creator), Smidt, H. (Creator), Belzer, C. (Creator) & de Vos, W. (Creator), Wageningen University, 9 May 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB9527
Dataset
Metagenome analysis reveals yet unexplored reductive dechlorinating potential of Dehalobacter sp. E1 growing in coculture with Sedimentibacter sp.
Maphosa, F. (Creator), van Passel, M. W. J. (Creator), de Vos, W. (Creator) & Smidt, H. (Creator), Wageningen University, 19 Sep 2012
https://www.ebi.ac.uk/ena/data/view/PRJEB386
Dataset
Aspergillus niger N402 derivatives grown with different amounts of iron in the medium
Odoni, D. I. (Creator), van Gaal, M. (Creator), Schonewille, T. (Creator), Tamayo Ramos, J. A. (Creator), Martins dos Santos, V. (Creator), Suarez Diez, M. (Creator) & Schaap, P. (Creator), Wageningen University, 19 Jun 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB20746
Dataset
Comparative genomic and physiological analysis of Trichococcus species
Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, F. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB12709
Dataset
Comparative genomic and physiological analysis of Trichococcus species
Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, F. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB12705
Dataset
Determination of variability of fermentor-grown Aspergillus niger
van der Veen, D. (Creator), Pimenta Ferreira De Oliveira, J. (Creator), van den Berg, W. (Creator) & de Graaff, L. (Creator), Wageningen University and Research Centre, 31 Dec 2008
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11405
Dataset
Microbe enriched dual RNA sequencing of Mycobacterium bovis BCG infecting macrophage-like THP-1 cells
Rienksma, R. A. (Creator), Suarez Diez, M. (Creator), Mollenkopf, H. J. (Creator), Dolganov, G. M. (Creator), Dorhoi, A. (Creator), Schoolnik, G. K. (Creator), Martins dos Santos, V. (Creator), Kaufmann, S. (Creator), Schaap, P. (Creator) & Gengenbacher, M. (Creator), Wageningen University, 17 Jun 2014
http://www.ebi.ac.uk/ena/data/view/PRJEB6552
Dataset
Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans
Snoek, L. B. (Creator), Sterken, M. (Creator), Bevers, R. P. J. (Creator), Volkers, J. M. (Creator), van 't Hof, A. (Creator), Brenchley, R. (Creator), Riksen, J. (Creator), Cossins, A. (Creator) & Kammenga, J. (Creator), Wageningen University & Research, 29 Jun 2017
DOI: 10.6084/m9.figshare.c.3815635
Dataset
RNA-targeting by the Type III-A CRISPR-Cas complex of Thermus thermophilus
Staals, R. (Creator), Zhu, Y. (Creator), Taylor, D. W. (Creator), Kornfeld, J. E. (Creator), Sharma, K. (Creator), Barendregt, A. (Creator), Koehorst, J. (Creator), Vlot, M. (Creator), Neupane, N. (Creator), Varossieau, K. (Creator), Sakamoto, K. (Creator), Suzuki, T. (Creator), Schaap, P. (Creator), Urlaub, H. (Creator), Heck, A. J. R. (Creator), Nogales, E. (Creator), Doudna, J. A. (Creator), Shinkai, A. (Creator) & van der Oost, J. (Creator), Wageningen University, 9 Oct 2014
http://www.ebi.ac.uk/ena/data/view/PRJEB7461
Dataset
Genome sequencing of one-carbon degrading acetogenic bacteria Sporomusa An4
Visser, M. (Creator), Pieterse, M. M. (Creator), Pinkse, M. W. H. (Creator), Nijsse, B. (Creator), Verhaert, P. D. E. M. (Creator), de Vos, W. (Creator) & Stams, F. (Creator), Wageningen University, 28 Feb 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB8443
Dataset
Assessment of the Accuracy of Anaerobic Fungal ITS1 Based Barcoded Amplicon Sequencing for Community Composition Analysis
Edwards, J. (Creator), Hermes, G. (Creator), Kittelmann, S. (Creator), Nijsse, B. (Creator) & Smidt, H. (Creator), Wageningen University, 9 Dec 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB29131
Dataset
The effect of DNA extraction methods on observed microbial communities from fibrous and liquid rumen fractions of dairy cows
Vaidya, J. D. (Creator), van den Bogert, B. (Creator), Edwards, J. (Creator), Boekhorst, J. (Creator), van Gastelen, S. (Creator), Saccenti, E. (Creator), Plugge, C. (Creator) & Smidt, H. (Creator), Wageningen University, 17 Oct 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB22996
Dataset
Genome sequence of organohalide-respiring Desulfoluna spongiiphila DBB and Desulfoluna butyratoxydans MSL71T
Peng, P. (Creator), Goris, T. (Creator), Lu, Y. (Creator), Nijsse, B. (Creator), Burrichter, A. (Creator), Schleheck, D. (Creator), Koehorst, J. (Creator), Liu, J. (Creator), Sipkema, D. (Creator), Sinninghe Damste, J. S. (Creator), Stams, F. (Creator), Häggblom, M. M. (Creator), Smidt, H. (Creator) & Atashgahi, S. (Creator), Wageningen University, 15 May 2019
https://www.ebi.ac.uk/ena/data/view/PRJEB31368
Dataset
The diurnal transcriptional landscape of the microalga Tetradesmus obliquus
Carreres, B. M. (Creator) & Martens, D. (Creator), Wageningen University & Research, 24 Sep 2018
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-7009/
Dataset
Genome sequence of Desulfitobacterium hafniense PCE-S
Goris, T. (Creator), Hornung, B. V. H. (Creator), Kruse, T. (Creator), Reinhold, A. (Creator), Westermann, M. (Creator), Schaap, P. (Creator), Smidt, H. (Creator) & Diekert, G. (Creator), Wageningen University, 15 Oct 2014
https://www.ebi.ac.uk/ena/data/view/PRJEB6708
Dataset
The transcriptional response of bioreactor-grown Aspergillus niger cultures towards three oils
van der Veen, D. (Creator), van den Berg, R. A. (Creator) & de Graaff, L. (Creator), Wageningen University and Research Centre, 1 Sep 2009
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14285
Dataset
A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters
Witjes, L. (Creator), Kooke, R. (Creator), van der Hooft, J. (Creator), de Vos, R. (Creator), Keurentjes, J. (Creator), Medema, M. (Creator) & Nijveen, H. (Creator), Wageningen University & Research, 2 Apr 2019
DOI: 10.6084/m9.figshare.c.4456952
Dataset
Microbial community response of an organohalide respiring enrichment culture to permanganate oxidation
Sutton, N. (Creator), Atashgahi, S. (Creator), Saccenti, E. (Creator), Grotenhuis, T. (Creator), Smidt, H. (Creator) & Rijnaarts, H. (Creator), Wageningen University, 29 May 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB8632
Dataset
Comparative genomic and physiological analysis of Trichococcus species
Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, F. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB12706
Dataset