Datasets
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Transcriptomics datasets for Clostridium autoethanogenum grown on CO in different environmental conditions
Diender, M. (Creator), Koehorst, J. (Creator), Machado de Sousa, D. (Creator), Wageningen University & Research, 25 Jan 2019
DOI: 10.4121/uuid:b6bd64a9-5bdb-4655-9829-520aa4600987
Dataset
Expected and observed genotype complexity in prokaryotes: correlation between 16S-rRNA phylogeny and protein domain content
Koehorst, J. (Creator), Wageningen University & Research, 24 Oct 2018
DOI: 10.4121/uuid:37346f1e-f8cf-4112-ba4b-1223a3e4edda
Dataset
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
Koehorst, J. (Creator), Wageningen University & Research, 25 Sep 2018
DOI: 10.4121/uuid:948c10fe-7ea5-47f3-bdb2-d5b0f908820b
Dataset
Genome sequence of Propionibacterium australiense
Vaidya, J. D. (Creator), Hornung, B. V. H. (Creator), Smidt, H. (Creator), Edwards, J. (Creator), Plugge, C. (Creator), Wageningen University, 5 Sep 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB19534
Dataset
Genome sequence of Propionibacterium JV5
Vaidya, J. D. (Creator), Hornung, B. V. H. (Creator), Smidt, H. (Creator), Edwards, J. (Creator), Plugge, C. (Creator), Wageningen University, 11 Aug 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB19533
Dataset
Effects of Argonaute on gene expression in Thermus thermophilus
Swarts, D. (Creator), Koehorst, J. (Creator), Westra, E. R. (Creator), Schaap, P. (Creator), van der Oost, J. (Creator), Wageningen University, 23 Apr 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB8709
Dataset
The diurnal transcriptional landscape of the microalga Tetradesmus obliquus
Carreres, B. M. (Creator), Martens, D. (Creator), Wageningen University & Research, 24 Sep 2018
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-7009/
Dataset
Aspergillus niger N402 derivatives grown with different amounts of iron in the medium
Odoni, D. I. (Creator), van Gaal, M. (Creator), Schonewille, T. (Creator), Tamayo Ramos, J. A. (Creator), Martins dos Santos, V. (Creator), Suarez Diez, M. (Creator), Schaap, P. (Creator), Wageningen University, 19 Jun 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB20746
Dataset
Rhizopus delemar grown under high and low oxygen conditions
Odoni, D. I. (Creator), Tamayo Ramos, J. A. (Creator), Sloothaak, J. (Creator), van Heck, R. G. A. (Creator), Martins dos Santos, V. (Creator), de Graaff, L. H. (Creator), Suarez Diez, M. (Creator), Schaap, P. (Creator), Wageningen University, 16 Feb 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB14210
Dataset
Genome sequence of Romboutsia str. Frifi
Gerritsen, J. (Creator), Umanetc, A. (Creator), van Leeuwen-Staneva, I. N. (Creator), Hornung, B. V. H. (Creator), Ritari, J. (Creator), Paulin, L. (Creator), Rijkers, G. T. (Creator), de Vos, W. (Creator), Smidt, H. (Creator), Wageningen University, 17 Mar 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB7106
Dataset
Complete genome sequence of the Akkermansia glycaniphila strain PytT a mucin-degrading specialist of the reticulated python gut
Ouwerkerk, J. P. (Creator), Koehorst, J. (Creator), Schaap, P. (Creator), Ritari, J. (Creator), Paulin, L. (Creator), Belzer, C. (Creator), de Vos, W. (Creator), Wageningen University, 2 Sep 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB15121
Dataset
Genome sequencing of one-carbon degrading acetogenic bacteria Moorella glycerini Strain NMP
Liebensteiner, M. (Creator), Pinkse, M. W. H. (Creator), Nijsse, B. (Creator), Verhaert, P. D. E. M. (Creator), Tsesmetzis, N. (Creator), Stams, F. (Creator), Lomans, B. P. (Creator), Wageningen University, 5 Feb 2015
http://www.ebi.ac.uk/ena/data/view/PRJEB8377
Dataset
Genome sequencing of one-carbon degrading acetogenic bacteria Sporomusa An4
Visser, M. (Creator), Pieterse, M. M. (Creator), Pinkse, M. W. H. (Creator), Nijsse, B. (Creator), Verhaert, P. D. E. M. (Creator), de Vos, W. (Creator), Stams, F. (Creator), Wageningen University, 28 Feb 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB8443
Dataset
Comparative genomic and physiological analysis of Trichococcus species
Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, F. (Creator), Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB12705
Dataset
Comparative genomic and physiological analysis of Trichococcus species
Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, F. (Creator), Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB12706
Dataset
Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river
Atashgahi, S. (Creator), Aydin, R. (Creator), Rocha Dimitrov, M. (Creator), Sipkema, D. (Creator), Hamonts, K. (Creator), Lahti, L. (Creator), Maphosa, F. (Creator), Kruse, T. (Creator), Saccenti, E. (Creator), Springael, D. (Creator), Dejonghe, W. (Creator), Smidt, H. (Creator), Wageningen University, 29 Oct 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB8703
Dataset
Assessment of Dietary Modulation of Inflammatory Tone (ADMIT)
Saccenti, E. (Creator), Ernst, R. (Creator), Coolen, J. (Creator), Wageningen UR, 13 Dec 2012
http://studies.dbnp.org/study/show/96239
Dataset
Monascus ruber as cell factory for lactic acid production at low pH
Weusthuis, R. (Creator), Mars, A. (Creator), Springer, J. (Creator), Wolbert, E. (Creator), van der Wal, H. (Creator), de Vrije, T. (Creator), Levisson, M. (Creator), Leprince, A. (Creator), Houweling-Tan, G. B. N. (Creator), Moers, A. P. H. A. (Creator), Hendriks, S. (Creator), Mendes, O. (Creator), Griekspoor, Y. (Creator), Werten, M. W. T. (Creator), Schaap, P. (Creator), van der Oost, J. (Creator), Eggink, G. (Creator), Wageningen University, 29 Jun 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB20852
Dataset
Genome sequence of Desulfitobacterium hafniense PCE-S
Goris, T. (Creator), Hornung, B. V. H. (Creator), Kruse, T. (Creator), Reinhold, A. (Creator), Westermann, M. (Creator), Schaap, P. (Creator), Smidt, H. (Creator), Diekert, G. (Creator), Wageningen University, 15 Oct 2014
https://www.ebi.ac.uk/ena/data/view/PRJEB6708
Dataset
The transcriptional response of bioreactor-grown Aspergillus niger cultures towards three oils
van der Veen, D. (Creator), van den Berg, R. A. (Creator), de Graaff, L. (Creator), Wageningen University and Research Centre, 1 Sep 2009
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14285
Dataset
Organic acids production from starch waste by rumen microorganisms
Palakawong Na Ayudthaya, S. (Creator), Hornung, B. V. H. (Creator), Ravikumar Varadarajan, A. (Creator), Plugge, W. (Creator), Plugge, C. (Creator), Wageningen University, 21 Dec 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB6322
Dataset
Determination of variability of fermentor-grown Aspergillus niger
van der Veen, D. (Creator), Pimenta Ferreira De Oliveira, J. (Creator), van den Berg, W. (Creator), de Graaff, L. (Creator), Wageningen University and Research Centre, 31 Dec 2008
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11405
Dataset
Assessment of the Accuracy of Anaerobic Fungal ITS1 Based Barcoded Amplicon Sequencing for Community Composition Analysis
Edwards, J. (Creator), Hermes, G. (Creator), Kittelmann, S. (Creator), Nijsse, B. (Creator), Smidt, H. (Creator), Wageningen University, 9 Dec 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB29131
Dataset
Listening in on a bacterial/fungal dialog: transcriptional profiling of an antagonistic interaction
Mela, F. (Creator), Leveau, J. H. J. (Creator), van Veen, J. A. (Creator), Fritsche, K. (Creator), de Graaff, L. H. (Creator), van den Berg, M. (Creator), de Boer, W. (Creator), Wageningen UR, 3 May 2014
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-350/
Dataset
Transcriptional and physiological diurnal responses of Tetradesmus obliquus under light-dark cycles and nitrogen limitation
Carreres, B. M. (Creator), Martens, D. (Creator), Wageningen University & Research, 30 May 2019
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-7016/
Dataset